Personal tools

UBERON:0000161

From FANTOM5_SSTAR

Revision as of 17:07, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:orifice
Namespace:FANTOM
Definition:"Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
Xrefs:
links:

FMA:3724

SCTID:91837002
Synonyms: "anatomical orifice" EXACT [FMA:3724]
"anatomical ostium" EXACT [FMA:3724]
"hilum" NARROW []
Comments:in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
Subset: upper_ontology_conflict

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004111(anatomical conduit)



Children

is a:UBERON:0000166 (oral opening)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000161 (orifice), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-46FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_02cf4d770a14da8cc7a3024caf18cd88p@chr1:132699659..132699668, +
1.09e-46FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_02cf4d770a14da8cc7a3024caf18cd88p@chr1:132699659..132699668, +
9.85e-40FFCP PHASE1:Mm9::chr11:77667108..77667156,+#_1276f6860cecf33414e2e7ea9ce80818p20@Myo18a
9.85e-40FFCP PHASE2:Mm9::chr11:77667108..77667156,+#_1276f6860cecf33414e2e7ea9ce80818p20@Myo18a
1.33e-39FFCP PHASE2:Mm9::chr7:29734689..29734698,-#_7974c043f64fe025ca264553736c75cdp12@Actn4
1.33e-39FFCP PHASE1:Mm9::chr7:29734689..29734698,-#_7974c043f64fe025ca264553736c75cdp12@Actn4
1.42e-35FFCP PHASE2:Mm9::chr18:35502686..35502690,-#_0d125fdf73087319347f922c3e039ec3p@chr18:35502686..35502690, -
1.42e-35FFCP PHASE2:Mm9::chr7:51011533..51011538,-#_0d125fdf73087319347f922c3e039ec3p1@ENSMUST00000147618
1.42e-35FFCP PHASE1:Mm9::chr3:96422520..96422551,+#_0d125fdf73087319347f922c3e039ec3p@chr3:96422520..96422551, +
1.42e-35FFCP PHASE2:Mm9::chr7:51038197..51038202,+#_0d125fdf73087319347f922c3e039ec3p@chr7:51038197..51038202, +
1.42e-35FFCP PHASE2:Mm9::chr15:91729805..91729815,+#_0d125fdf73087319347f922c3e039ec3p@chr15:91729805..91729815, +
1.42e-35FFCP PHASE1:Mm9::chr5:86898080..86898087,-#_0d125fdf73087319347f922c3e039ec3p3@Tmprss11a
1.42e-35FFCP PHASE1:Mm9::chr15:101520894..101520913,+#_0d125fdf73087319347f922c3e039ec3p@chr15:101520894..101520913, +
1.42e-35FFCP PHASE2:Mm9::chr15:101506711..101506719,-#_0d125fdf73087319347f922c3e039ec3p@chr15:101506711..101506719, -
1.42e-35FFCP PHASE2:Mm9::chr5:86898080..86898087,-#_0d125fdf73087319347f922c3e039ec3p3@Tmprss11a
1.42e-35FFCP PHASE1:Mm9::chr4:56445929..56445936,-#_0d125fdf73087319347f922c3e039ec3p@chr4:56445929..56445936, -
1.42e-35FFCP PHASE1:Mm9::chr5:86756768..86756782,-#_0d125fdf73087319347f922c3e039ec3p2@Tmprss11d
1.42e-35FFCP PHASE2:Mm9::chr7:31027894..31027901,-#_0d125fdf73087319347f922c3e039ec3p3@Wdr62
1.42e-35FFCP PHASE2:Mm9::chr5:86756768..86756782,-#_0d125fdf73087319347f922c3e039ec3p2@Tmprss11d
1.42e-35FFCP PHASE2:Mm9::chr12:57793900..57793908,-#_0d125fdf73087319347f922c3e039ec3p@chr12:57793900..57793908, -
1.42e-35FFCP PHASE1:Mm9::chr12:57793900..57793908,-#_0d125fdf73087319347f922c3e039ec3p@chr12:57793900..57793908, -
1.42e-35FFCP PHASE1:Mm9::chr15:101520939..101520945,-#_0d125fdf73087319347f922c3e039ec3p@chr15:101520939..101520945, -
1.42e-35FFCP PHASE1:Mm9::chr15:91668686..91668696,+#_0d125fdf73087319347f922c3e039ec3p2@Smgc
1.42e-35FFCP PHASE2:Mm9::chr15:101520894..101520913,+#_0d125fdf73087319347f922c3e039ec3p@chr15:101520894..101520913, +
1.42e-35FFCP PHASE1:Mm9::chr18:35502686..35502690,-#_0d125fdf73087319347f922c3e039ec3p@chr18:35502686..35502690, -
1.42e-35FFCP PHASE1:Mm9::chr5:86802426..86802432,-#_0d125fdf73087319347f922c3e039ec3p4@Tmprss11d
1.42e-35FFCP PHASE2:Mm9::chr5:86802426..86802432,-#_0d125fdf73087319347f922c3e039ec3p4@Tmprss11d
1.42e-35FFCP PHASE1:Mm9::chr7:51038197..51038202,+#_0d125fdf73087319347f922c3e039ec3p@chr7:51038197..51038202, +
1.42e-35FFCP PHASE1:Mm9::chr17:31827369..31827371,-#_0d125fdf73087319347f922c3e039ec3p@chr17:31827369..31827371, -
1.42e-35FFCP PHASE2:Mm9::chr15:91668686..91668696,+#_0d125fdf73087319347f922c3e039ec3p2@Smgc
1.42e-35FFCP PHASE2:Mm9::chr3:96422520..96422551,+#_0d125fdf73087319347f922c3e039ec3p@chr3:96422520..96422551, +
1.42e-35FFCP PHASE2:Mm9::chr15:101520939..101520945,-#_0d125fdf73087319347f922c3e039ec3p@chr15:101520939..101520945, -
1.42e-35FFCP PHASE1:Mm9::chr7:51011533..51011538,-#_0d125fdf73087319347f922c3e039ec3p1@ENSMUST00000147618
1.42e-35FFCP PHASE1:Mm9::chr7:31027894..31027901,-#_0d125fdf73087319347f922c3e039ec3p3@Wdr62
1.42e-35FFCP PHASE2:Mm9::chr17:31827369..31827371,-#_0d125fdf73087319347f922c3e039ec3p@chr17:31827369..31827371, -
1.42e-35FFCP PHASE1:Mm9::chr15:91729805..91729815,+#_0d125fdf73087319347f922c3e039ec3p@chr15:91729805..91729815, +
1.42e-35FFCP PHASE1:Mm9::chr15:101506711..101506719,-#_0d125fdf73087319347f922c3e039ec3p@chr15:101506711..101506719, -
1.42e-35FFCP PHASE2:Mm9::chr4:56445929..56445936,-#_0d125fdf73087319347f922c3e039ec3p@chr4:56445929..56445936, -
4.69e-32FFCP PHASE1:Mm9::chr3:113280651..113280658,-#_f624b74488aa5975a0d27dd1ef39d82fp7@Amy1
4.69e-32FFCP PHASE2:Mm9::chr3:113280651..113280658,-#_f624b74488aa5975a0d27dd1ef39d82fp7@Amy1
7.61e-32FFCP PHASE2:Mm9::chr3:91974134..91974144,+#_0990bf660fcd0e64ba9c5c710f2e36fdp1@uc008qdo.1
7.61e-32FFCP PHASE1:Mm9::chr3:91974134..91974144,+#_0990bf660fcd0e64ba9c5c710f2e36fdp1@uc008qdo.1
9.68e-32FFCP PHASE2:Mm9::chr2:64813740..64813748,-#_888a87e45f5b3278c591587bac0a0495p7@Grb14
9.68e-32FFCP PHASE1:Mm9::chr2:64813740..64813748,-#_888a87e45f5b3278c591587bac0a0495p7@Grb14
1.92e-31FFCP PHASE2:Mm9::chr9:50302244..50302251,+#_cd005990afec45fcd73964b286484de5p3@1600029D21Rik
1.92e-31FFCP PHASE1:Mm9::chr9:50302244..50302251,+#_cd005990afec45fcd73964b286484de5p3@1600029D21Rik
1.99e-28FFCP PHASE2:Hg19::chr16:2882120..2882124,+#_4ff94c6b209f4778ba8fd76d0088340bp@chr16:2882120..2882124, +
1.99e-28FFCP PHASE1:Hg19::chr16:2882120..2882124,+#_4ff94c6b209f4778ba8fd76d0088340bp@chr16:2882120..2882124, +
3.53e-28FFCP PHASE2:Mm9::chr7:135148666..135148682,-#_52806d82a42c588139e30e5036154142p1@ENSMUST00000126205
3.53e-28FFCP PHASE1:Mm9::chr7:135148666..135148682,-#_52806d82a42c588139e30e5036154142p1@ENSMUST00000126205
5.37e-28FFCP PHASE1:Hg19::chr4:71339736..71339746,+#_6cb7879bda7ab4077b5db8c23935af04p14@MUC7
5.37e-28FFCP PHASE2:Hg19::chr16:2880755..2880772,-#_6cb7879bda7ab4077b5db8c23935af04p@chr16:2880755..2880772, -
5.37e-28FFCP PHASE1:Hg19::chr16:2880755..2880772,-#_6cb7879bda7ab4077b5db8c23935af04p@chr16:2880755..2880772, -
5.37e-28FFCP PHASE1:Hg19::chr4:71347643..71347654,+#_6cb7879bda7ab4077b5db8c23935af04p@chr4:71347643..71347654, +
5.37e-28FFCP PHASE2:Hg19::chr4:71346609..71346620,+#_6cb7879bda7ab4077b5db8c23935af04p1@BX648904
5.37e-28FFCP PHASE1:Hg19::chr4:71347264..71347292,-#_6cb7879bda7ab4077b5db8c23935af04p2@CU693013
5.37e-28FFCP PHASE1:Hg19::chr4:189860069..189860075,+#_6cb7879bda7ab4077b5db8c23935af04p@chr4:189860069..189860075, +
5.37e-28FFCP PHASE2:Hg19::chr4:71339736..71339746,+#_6cb7879bda7ab4077b5db8c23935af04p14@MUC7
5.37e-28FFCP PHASE2:Hg19::chr4:71347643..71347654,+#_6cb7879bda7ab4077b5db8c23935af04p@chr4:71347643..71347654, +
5.37e-28FFCP PHASE2:Hg19::chr4:71347264..71347292,-#_6cb7879bda7ab4077b5db8c23935af04p2@CU693013
5.37e-28FFCP PHASE2:Hg19::chr4:189860069..189860075,+#_6cb7879bda7ab4077b5db8c23935af04p@chr4:189860069..189860075, +
5.37e-28FFCP PHASE1:Hg19::chr4:71346691..71346709,-#_6cb7879bda7ab4077b5db8c23935af04p@chr4:71346691..71346709, -
5.37e-28FFCP PHASE1:Hg19::chr4:71347478..71347512,-#_6cb7879bda7ab4077b5db8c23935af04p1@CU693013
5.37e-28FFCP PHASE2:Hg19::chr16:2880736..2880751,+#_6cb7879bda7ab4077b5db8c23935af04p@chr16:2880736..2880751, +
5.37e-28FFCP PHASE1:Hg19::chr16:2880736..2880751,+#_6cb7879bda7ab4077b5db8c23935af04p@chr16:2880736..2880751, +
5.37e-28FFCP PHASE2:Hg19::chr4:71346691..71346709,-#_6cb7879bda7ab4077b5db8c23935af04p@chr4:71346691..71346709, -
5.37e-28FFCP PHASE2:Hg19::chr4:71347478..71347512,-#_6cb7879bda7ab4077b5db8c23935af04p1@CU693013
5.37e-28FFCP PHASE1:Hg19::chr4:71346609..71346620,+#_6cb7879bda7ab4077b5db8c23935af04p1@BX648904
1.53e-27FFCP PHASE1:Hg19::chr4:69313145..69313164,+#_8d8173e60c3e192cd48dc12303a9efabp2@TMPRSS11E
1.53e-27FFCP PHASE2:Hg19::chr4:69313145..69313164,+#_8d8173e60c3e192cd48dc12303a9efabp2@TMPRSS11E
3.42e-27FFCP PHASE2:Mm9::chr15:74615359..74615367,-#_e9da7807f055b22dddb9f748f0c43455p@chr15:74615359..74615367, -
3.42e-27FFCP PHASE1:Mm9::chr15:74615359..74615367,-#_e9da7807f055b22dddb9f748f0c43455p@chr15:74615359..74615367, -
4.18e-27FFCP PHASE2:Mm9::chr17:24175190..24175195,+#_bf6ee783e222cf778d84bb5c6e74f94cp2@Prss27
4.18e-27FFCP PHASE1:Mm9::chr17:24175190..24175195,+#_bf6ee783e222cf778d84bb5c6e74f94cp2@Prss27
5.12e-27FFCP PHASE1:Mm9::chr3:108577839..108577848,+#_b491c75af7b9d2b0fd4b2a1cc149e465p@chr3:108577839..108577848, +
5.12e-27FFCP PHASE2:Mm9::chr3:108577839..108577848,+#_b491c75af7b9d2b0fd4b2a1cc149e465p@chr3:108577839..108577848, +
7.67e-27FFCP PHASE2:Mm9::chr4:122366534..122366563,+#_a18f6ec1c003366e3aff118b61310917p2@9530002B09Rik
7.67e-27FFCP PHASE1:Mm9::chr9:122943849..122943870,+#_a18f6ec1c003366e3aff118b61310917p1@Tgm4
7.67e-27FFCP PHASE2:Mm9::chr9:122943849..122943870,+#_a18f6ec1c003366e3aff118b61310917p1@Tgm4
7.67e-27FFCP PHASE1:Mm9::chr7:28914823..28914829,+#_a18f6ec1c003366e3aff118b61310917p1@9530053A07Rik
7.67e-27FFCP PHASE1:Mm9::chr4:122366534..122366563,+#_a18f6ec1c003366e3aff118b61310917p2@9530002B09Rik
7.67e-27FFCP PHASE2:Mm9::chr7:28914823..28914829,+#_a18f6ec1c003366e3aff118b61310917p1@9530053A07Rik
8.55e-27FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_006f7e806230187065b1572e26c7cc5bp2@PAX9
8.55e-27FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_006f7e806230187065b1572e26c7cc5bp2@PAX9
1.15e-26FFCP PHASE1:Mm9::chr2:80157000..80157030,+#_a9f73ee606981531a1de13781952ae5dp@chr2:80157000..80157030, +
1.15e-26FFCP PHASE2:Mm9::chr2:80157000..80157030,+#_a9f73ee606981531a1de13781952ae5dp@chr2:80157000..80157030, +
1.3e-24FFCP PHASE1:Hg19::chr5:134375398..134375414,-#_97e754f0be912bf94e8cd755bf2e845ap2@ENST00000511256
1.3e-24FFCP PHASE2:Hg19::chr5:134375398..134375414,-#_97e754f0be912bf94e8cd755bf2e845ap2@ENST00000511256
2.98e-24FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr9:96425825..96425834, -
2.98e-24FFCP PHASE1:Mm9::chr17:40656968..40656977,+#_cdaf1a03a0cf5febd4f741ad75606d6fp2@Gm17495
2.98e-24FFCP PHASE2:Mm9::chr2:120911482..120911489,-#_cdaf1a03a0cf5febd4f741ad75606d6fp4@Tgm5
2.98e-24FFCP PHASE2:Mm9::chr1:52741574..52741579,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr1:52741574..52741579, +
2.98e-24FFCP PHASE2:Mm9::chr7:31027882..31027890,-#_cdaf1a03a0cf5febd4f741ad75606d6fp2@Wdr62
2.98e-24FFCP PHASE2:Mm9::chr15:101524277..101524311,-#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr15:101524277..101524311, -
2.98e-24FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr9:96425983..96425992, +
2.98e-24FFCP PHASE1:Mm9::chr7:51271323..51271366,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr7:51271323..51271366, +
2.98e-24FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr9:96425983..96425992, +
2.98e-24FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr7:114836650..114836663, +
2.98e-24FFCP PHASE2:Mm9::chr6:60435965..60435986,+#_cdaf1a03a0cf5febd4f741ad75606d6fp@chr6:60435965..60435986, +
2.98e-24FFCP PHASE2:Mm9::chr17:40656968..40656977,+#_cdaf1a03a0cf5febd4f741ad75606d6fp2@Gm17495

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000161&oldid=3277079"