UBERON:0000203
From FANTOM5_SSTAR
| Name: | pallium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://sourceforge.net/tracker/?func | ||
| Xrefs: |
| ||
| Synonyms: |
"area dorsalis telencephali" EXACT [ZFA:0000505] "dorsal part of telencephalon" EXACT [ISBN10:0471888893] "dorsal telencephalic area" EXACT [ZFA:0000505] "dorsal telencephalon" EXACT [ZFA:0000505] | ||
| Comments: | Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP] | ||
| Subset: | developmental_classification | ||
| Created by: | cjm | ||
| Creation date: | 2009-04-18T12:03:09Z |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002791(regional part of telencephalon) |
|---|---|
| part_of: | UBERON:0001893(telencephalon) |
Children
| part of: | UBERON:0000956 (cerebral cortex),UBERON:0002421 (hippocampal formation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
- 10076-102A4 (occipital lobe, adult, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
- 10076-102A4 (occipital lobe, adult, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000203 (pallium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.52e-129 | FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_b1ee23baa05af00f0392ea685092ff56 | p@chr10:11047712..11047726, + |
| 1.52e-129 | FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_b1ee23baa05af00f0392ea685092ff56 | p@chr10:11047712..11047726, + |
| 1.72e-126 | FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_6fa737de37c61bdd76ddc35ef1ddea93 | p1@ENST00000518631 |
| 1.72e-126 | FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_6fa737de37c61bdd76ddc35ef1ddea93 | p1@ENST00000518631 |
| 2.83e-119 | FFCP PHASE2:Hg19::chr10:10504250..10504278,+#_52b821af9f4dfc810e72e039955fe2bb | p@chr10:10504250..10504278, + |
| 2.83e-119 | FFCP PHASE1:Hg19::chr10:10504250..10504278,+#_52b821af9f4dfc810e72e039955fe2bb | p@chr10:10504250..10504278, + |
| 4.39e-119 | FFCP PHASE2:Hg19::chr18:70305745..70305761,-#_81ad79f2cd34c289de0293ae334511f2 | p@chr18:70305745..70305761, - |
| 4.39e-119 | FFCP PHASE1:Hg19::chr18:70305745..70305761,-#_81ad79f2cd34c289de0293ae334511f2 | p@chr18:70305745..70305761, - |
| 1.91e-117 | FFCP PHASE1:Hg19::chr18:70305621..70305634,-#_88aa4df41375027c04a22c2313291133 | p@chr18:70305621..70305634, - |
| 1.91e-117 | FFCP PHASE2:Hg19::chr18:70305621..70305634,-#_88aa4df41375027c04a22c2313291133 | p@chr18:70305621..70305634, - |
| 2.42e-117 | FFCP PHASE2:Hg19::chr22:43821065..43821115,+#_987d9a792e0dd9f3223f44b8d855c7fb | p4@MPPED1 |
| 2.42e-117 | FFCP PHASE1:Hg19::chr22:43821065..43821115,+#_987d9a792e0dd9f3223f44b8d855c7fb | p4@MPPED1 |
| 2.3e-113 | FFCP PHASE1:Hg19::chr10:11047746..11047768,+#_6aa5d5056a1f2f5fbdc9518a23ccb64a | p@chr10:11047746..11047768, + |
| 2.3e-113 | FFCP PHASE2:Hg19::chr10:11047746..11047768,+#_6aa5d5056a1f2f5fbdc9518a23ccb64a | p@chr10:11047746..11047768, + |
| 4.95e-111 | FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_19d855df0af42098d062b3eb1cfd3f06 | p@chr19:54462560..54462571, + |
| 4.95e-111 | FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_19d855df0af42098d062b3eb1cfd3f06 | p@chr19:54462560..54462571, + |
| 2.54e-110 | FFCP PHASE1:Hg19::chr10:11046599..11046616,+#_7a272b540c266124b181175ad8647e5b | p@chr10:11046599..11046616, + |
| 2.54e-110 | FFCP PHASE2:Hg19::chr10:11046599..11046616,+#_7a272b540c266124b181175ad8647e5b | p@chr10:11046599..11046616, + |
| 6.85e-110 | FFCP PHASE2:Hg19::chr8:110987986..110988010,-#_f7c6c80f7d0d0f48a61ead6be8dce4de | p1@KCNV1 |
| 6.85e-110 | FFCP PHASE1:Hg19::chr8:110987986..110988010,-#_f7c6c80f7d0d0f48a61ead6be8dce4de | p1@KCNV1 |
| 8.08e-110 | FFCP PHASE1:Hg19::chr5:17404114..17404134,+#_fc414b5c220cdd64b13f7923fcf2090b | p1@ENST00000508677 |
| 8.08e-110 | FFCP PHASE2:Hg19::chr5:17404114..17404134,+#_fc414b5c220cdd64b13f7923fcf2090b | p1@ENST00000508677 |
| 1.16e-109 | FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_970c90d6667843c4386d8c310eb8bf1b | p8@OPCML |
| 1.16e-109 | FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_970c90d6667843c4386d8c310eb8bf1b | p8@OPCML |
| 6.25e-109 | FFCP PHASE1:Hg19::chr14:70546905..70546935,-#_c4bad000a0f6fb501de264c53a431106 | p3@SLC8A3 |
| 6.25e-109 | FFCP PHASE2:Hg19::chr14:70546905..70546935,-#_c4bad000a0f6fb501de264c53a431106 | p3@SLC8A3 |
| 4.02e-108 | FFCP PHASE1:Hg19::chr16:758668..758696,+#_58fc48c119de4388b9ae053ce3f163fe | p@chr16:758668..758696, + |
| 4.02e-108 | FFCP PHASE2:Hg19::chr16:758668..758696,+#_58fc48c119de4388b9ae053ce3f163fe | p@chr16:758668..758696, + |
| 5.1e-108 | FFCP PHASE2:Hg19::chr5:22754690..22754720,+#_eccae2fb1c499f26609fb3f8efa9f7bc | p@chr5:22754690..22754720, + |
| 5.1e-108 | FFCP PHASE1:Hg19::chr5:22754690..22754720,+#_eccae2fb1c499f26609fb3f8efa9f7bc | p@chr5:22754690..22754720, + |
| 5.75e-108 | FFCP PHASE2:Hg19::chr8:67405573..67405590,+#_843f8b7829722b7366d8d70b2fe6f7a3 | p7@C8orf46 |
| 5.75e-108 | FFCP PHASE1:Hg19::chr8:67405573..67405590,+#_843f8b7829722b7366d8d70b2fe6f7a3 | p7@C8orf46 |
| 1.84e-107 | FFCP PHASE2:Hg19::chr9:10612907..10612918,-#_583b41b04d587c3c4a7dd14bd9e3a6cd | p17@PTPRD |
| 1.84e-107 | FFCP PHASE1:Hg19::chr9:10612907..10612918,-#_583b41b04d587c3c4a7dd14bd9e3a6cd | p17@PTPRD |
| 6.72e-107 | FFCP PHASE1:Hg19::chr12:62585176..62585196,-#_2fb603422847105f1a9d6a014715f6e2 | p14@FAM19A2 |
| 6.72e-107 | FFCP PHASE2:Hg19::chr12:62585176..62585196,-#_2fb603422847105f1a9d6a014715f6e2 | p14@FAM19A2 |
| 8.42e-107 | FFCP PHASE2:Hg19::chr18:70305699..70305738,-#_f156e157ed0ff2fc6625ce58171cb12e | p@chr18:70305699..70305738, - |
| 8.42e-107 | FFCP PHASE1:Hg19::chr18:70305699..70305738,-#_f156e157ed0ff2fc6625ce58171cb12e | p@chr18:70305699..70305738, - |
| 1.04e-106 | FFCP PHASE1:Hg19::chr10:11047633..11047685,+#_910593b8b22dfa8bcbffee96806cd071 | p@chr10:11047633..11047685, + |
| 1.04e-106 | FFCP PHASE2:Hg19::chr10:11047633..11047685,+#_910593b8b22dfa8bcbffee96806cd071 | p@chr10:11047633..11047685, + |
| 1.12e-106 | FFCP PHASE1:Hg19::chr6:160311995..160312034,+#_04a3dd95ee5de46c61464ae0586fa83e | p@chr6:160311995..160312034, + |
| 1.12e-106 | FFCP PHASE2:Hg19::chr6:160311995..160312034,+#_04a3dd95ee5de46c61464ae0586fa83e | p@chr6:160311995..160312034, + |
| 2.02e-106 | FFCP PHASE2:Hg19::chr11:133402347..133402360,-#_b9bf7e0bb565017a805d97bbc4fa78b0 | p6@OPCML |
| 2.02e-106 | FFCP PHASE1:Hg19::chr11:133402347..133402360,-#_b9bf7e0bb565017a805d97bbc4fa78b0 | p6@OPCML |
| 2.02e-106 | FFCP PHASE2:Hg19::chr12:87232669..87232696,-#_b9bf7e0bb565017a805d97bbc4fa78b0 | p6@MGAT4C |
| 2.02e-106 | FFCP PHASE1:Hg19::chr12:87232669..87232696,-#_b9bf7e0bb565017a805d97bbc4fa78b0 | p6@MGAT4C |
| 6.73e-106 | FFCP PHASE1:Hg19::chr8:110986427..110986445,-#_5dac8ca5d0bb2d306f474b95391c2437 | p4@KCNV1 |
| 6.73e-106 | FFCP PHASE2:Hg19::chr8:110986427..110986445,-#_5dac8ca5d0bb2d306f474b95391c2437 | p4@KCNV1 |
| 1.11e-105 | FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_22b0e451c1a3c244ea019f40941e8b3f | p3@PDYN |
| 1.11e-105 | FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_22b0e451c1a3c244ea019f40941e8b3f | p3@PDYN |
| 1.34e-105 | FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f170315fc9a2df417b8f89cfac5cdf59 | p1@ENST00000511849 |
| 1.34e-105 | FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f170315fc9a2df417b8f89cfac5cdf59 | p1@ENST00000511849 |
| 1.34e-105 | FFCP PHASE1:Hg19::chr4:39064313..39064326,+#_f170315fc9a2df417b8f89cfac5cdf59 | p7@KLHL5 |
| 1.34e-105 | FFCP PHASE2:Hg19::chr4:39064313..39064326,+#_f170315fc9a2df417b8f89cfac5cdf59 | p7@KLHL5 |
| 2.69e-105 | FFCP PHASE2:Hg19::chr6:12718426..12718446,+#_2fafdb2e8dc0086b5ca415592b5c4104 | p24@PHACTR1 |
| 2.69e-105 | FFCP PHASE1:Hg19::chr6:12718426..12718446,+#_2fafdb2e8dc0086b5ca415592b5c4104 | p24@PHACTR1 |
| 4.19e-104 | FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_c4ed12cb62995a849427f7982d3d1298 | p@chr15:30231269..30231299, - |
| 4.19e-104 | FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_c4ed12cb62995a849427f7982d3d1298 | p@chr15:30231269..30231299, - |
| 5.28e-104 | FFCP PHASE2:Hg19::chr11:45564023..45564028,-#_b4218ccbad60972e4e7ca6aed05dccd7 | p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315 |
| 5.28e-104 | FFCP PHASE1:Hg19::chr11:45564023..45564028,-#_b4218ccbad60972e4e7ca6aed05dccd7 | p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315 |
| 1.57e-103 | FFCP PHASE2:Hg19::chr10:116852602..116852626,+#_8f15b2b1ec5f4d42721081fb6afb07e0 | p5@ATRNL1 |
| 1.57e-103 | FFCP PHASE1:Hg19::chr10:116852602..116852626,+#_8f15b2b1ec5f4d42721081fb6afb07e0 | p5@ATRNL1 |
| 2.22e-103 | FFCP PHASE1:Hg19::chr5:94621232..94621256,-#_38f459ef227856762da6f435e63027ec | p@chr5:94621232..94621256, - |
| 2.22e-103 | FFCP PHASE2:Hg19::chr5:94621232..94621256,-#_38f459ef227856762da6f435e63027ec | p@chr5:94621232..94621256, - |
| 2.73e-103 | FFCP PHASE1:Hg19::chr3:62359214..62359232,-#_e47e1b0f40afc42c09efc32f844ba388 | p1@FEZF2 |
| 2.73e-103 | FFCP PHASE2:Hg19::chr3:62359214..62359232,-#_e47e1b0f40afc42c09efc32f844ba388 | p1@FEZF2 |
| 3.26e-103 | FFCP PHASE1:Hg19::chr2:136343886..136343897,+#_4a7600cce4d7a5f40c49b9c6f149586b | p4@R3HDM1 |
| 3.26e-103 | FFCP PHASE2:Hg19::chr2:136343886..136343897,+#_4a7600cce4d7a5f40c49b9c6f149586b | p4@R3HDM1 |
| 1.5e-102 | FFCP PHASE1:Hg19::chr2:10508688..10508712,+#_65c762bb6a00b17a9053d20c8530ffe3 | p8@HPCAL1 |
| 1.5e-102 | FFCP PHASE2:Hg19::chr2:10508688..10508712,+#_65c762bb6a00b17a9053d20c8530ffe3 | p8@HPCAL1 |
| 2.05e-102 | FFCP PHASE2:Hg19::chr12:122794425..122794445,-#_a8074b1843b3449fd20cae30dfc0d012 | p@chr12:122794425..122794445, - |
| 2.05e-102 | FFCP PHASE1:Hg19::chr12:122794425..122794445,-#_a8074b1843b3449fd20cae30dfc0d012 | p@chr12:122794425..122794445, - |
| 3.64e-102 | FFCP PHASE1:Hg19::chr17:37764312..37764326,-#_258bf7c962d4e0ae6a4ae598086f2ee4 | p2@NEUROD2 |
| 3.64e-102 | FFCP PHASE2:Hg19::chr17:37764312..37764326,-#_258bf7c962d4e0ae6a4ae598086f2ee4 | p2@NEUROD2 |
| 4.48e-102 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_35588b283ece3752fd9078d042e0f2a0 | p3@GRIN2B |
| 4.48e-102 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_35588b283ece3752fd9078d042e0f2a0 | p3@GRIN2B |
| 1.95e-101 | FFCP PHASE2:Hg19::chr16:758701..758727,+#_8055984f1d9022f6688f71d4948c7608 | p@chr16:758701..758727, + |
| 1.95e-101 | FFCP PHASE1:Hg19::chr16:758701..758727,+#_8055984f1d9022f6688f71d4948c7608 | p@chr16:758701..758727, + |
| 5.99e-101 | FFCP PHASE1:Hg19::chr1:177134348..177134360,-#_338d80b51b826d86c4016041f971239f | p10@ASTN1 |
| 5.99e-101 | FFCP PHASE2:Hg19::chr1:177134348..177134360,-#_338d80b51b826d86c4016041f971239f | p10@ASTN1 |
| 6.35e-101 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_a2bedb971a632eaa15287f68ab12f7e1 | p@chr5:80255907..80255942, + |
| 6.35e-101 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_a2bedb971a632eaa15287f68ab12f7e1 | p@chr5:80255907..80255942, + |
| 8.54e-101 | FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_34c5a67755527b29274d610eb03299ec | p@chr11:84431459..84431498, - |
| 8.54e-101 | FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_34c5a67755527b29274d610eb03299ec | p@chr11:84431459..84431498, - |
| 1.54e-100 | FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_ca36061c2e31be8ebe295c9027c7d8ed | p@chr17:36757284..36757327, + |
| 1.54e-100 | FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_ca36061c2e31be8ebe295c9027c7d8ed | p@chr17:36757284..36757327, + |
| 1.94e-100 | FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_4a489b4be338c21229f720d6dfdf00ef | p9@PPP2R2C |
| 1.94e-100 | FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_4a489b4be338c21229f720d6dfdf00ef | p9@PPP2R2C |
| 5.35e-100 | FFCP PHASE2:Hg19::chr1:50575292..50575326,+#_23cc23fb5f414f28a07f8e7bddd235db | p8@ELAVL4 |
| 5.35e-100 | FFCP PHASE1:Hg19::chr1:50575292..50575326,+#_23cc23fb5f414f28a07f8e7bddd235db | p8@ELAVL4 |
| 5.71e-100 | FFCP PHASE1:Hg19::chr10:14372834..14372846,-#_450bdc484fd416b684a4d6c7e7a38778 | p12@FRMD4A |
| 5.71e-100 | FFCP PHASE2:Hg19::chr10:14372834..14372846,-#_450bdc484fd416b684a4d6c7e7a38778 | p12@FRMD4A |
| 7.95e-100 | FFCP PHASE2:Hg19::chr5:56910048..56910074,+#_7d8384390a506c2efb1d77bfac2ac505 | p1@ENST00000509844 |
| 7.95e-100 | FFCP PHASE1:Hg19::chr5:56910048..56910074,+#_7d8384390a506c2efb1d77bfac2ac505 | p1@ENST00000509844 |
| 9.35e-100 | FFCP PHASE2:Hg19::chr6:53976259..53976270,+#_32ff792735ae35d4fe00832ae15476ec | p5@MLIP |
| 9.35e-100 | FFCP PHASE1:Hg19::chr6:53976259..53976270,+#_32ff792735ae35d4fe00832ae15476ec | p5@MLIP |
| 1.13e-99 | FFCP PHASE2:Hg19::chr6:98264571..98264591,+#_fb19010ac2c37cd865725e3b1b2bdf83 | p@chr6:98264571..98264591, + |
| 1.13e-99 | FFCP PHASE1:Hg19::chr6:98264571..98264591,+#_fb19010ac2c37cd865725e3b1b2bdf83 | p@chr6:98264571..98264591, + |
| 2.26e-99 | FFCP PHASE2:Hg19::chr5:63256975..63257005,-#_5669d3199b21bd040288aa73ac695b3e | p1@HTR1A |
| 2.26e-99 | FFCP PHASE1:Hg19::chr5:63256975..63257005,-#_5669d3199b21bd040288aa73ac695b3e | p1@HTR1A |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
