Personal tools

UBERON:0000485

From FANTOM5_SSTAR

Revision as of 17:10, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:simple columnar epithelium
Namespace:FANTOM
Definition:"Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium]
Xrefs:
links:

AAO:0010063
AEO:0000068
BILA:0000068
CARO:0000068
EHDAA2:0003068
FBbt:00007027
FMA:45567
HAO:0000068
[ Gray1059.png Gray1059.png]
[ 200px-Gray1059.png 200px-Gray1059.png]
ncithesaurus:Simple_Columnar_Epithelium
TAO:0001496
XAO:0004008

ZFA:0001496
Synonyms: "columnar epithelium" EXACT [EHDAA2:0003068]
"columnar epithlium" EXACT [AEO:0000068]
"epithelium simplex columnare" EXACT []
"simple columnar epithelium" EXACT []
Alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0012274(columnar epithelium)



Children

is a:UBERON:0001277 (intestinal epithelium),UBERON:0001997 (olfactory epithelium),UBERON:0002031 (epithelium of bronchus),UBERON:0007497 (developing epithelial placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000485 (simple columnar epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.63e-72FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_20d3e24d138e2f97617e8acc53747bb6p@chr17:46693370..46693378, +
7.63e-72FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_20d3e24d138e2f97617e8acc53747bb6p@chr17:46693370..46693378, +
4.29e-63FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_f47b805e032d159f11449d994684bc82p@chr8:122335239..122335244, +
4.29e-63FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_f47b805e032d159f11449d994684bc82p@chr8:122335239..122335244, +
2.02e-58FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_c3f59912537da0ca29411e99a7250f6cp@chr17:57201412..57201418, -
2.02e-58FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_c3f59912537da0ca29411e99a7250f6cp@chr17:57201412..57201418, -
3.89e-56FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_51abe6f490857572a7597040de1823c8p@chr4:155434167..155434177, +
3.89e-56FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_51abe6f490857572a7597040de1823c8p@chr4:155434167..155434177, +
2.49e-55FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_0a5e502836dd297ae8e3f866d7947de6p@chr8:64192378..64192389, +
2.49e-55FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_0a5e502836dd297ae8e3f866d7947de6p@chr8:64192378..64192389, +
2.97e-53FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_7652b27b09928ad062dcce167d452da3p@chr3:122215917..122215967, -
2.97e-53FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_7652b27b09928ad062dcce167d452da3p@chr3:122215917..122215967, -
5.19e-53FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_bb5f3459be531b367c14d2b4608650d3p@chr2:143738263..143738267, +
5.19e-53FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_bb5f3459be531b367c14d2b4608650d3p@chr2:143738263..143738267, +
3.5e-50FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_fb79677e5065acd44f879c6db322acc5p@chr5:135465906..135465912, +
3.5e-50FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_fb79677e5065acd44f879c6db322acc5p@chr5:135465906..135465912, +
8.87e-50FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_d85ad09178263a6e502c18888cf7a278p4@Leng9
8.87e-50FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_d85ad09178263a6e502c18888cf7a278p4@Leng9
1.7e-49FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_c0cbb2cf283e8cfa42581a9d51a35253p5@Leng9
1.7e-49FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_c0cbb2cf283e8cfa42581a9d51a35253p5@Leng9
2.26e-48FFCP PHASE1:Mm9::chr9:69315761..69315767,+#_8917e4f3bd83317878bd024c53ee29c5p@chr9:69315761..69315767, +
2.26e-48FFCP PHASE2:Mm9::chr9:69315761..69315767,+#_8917e4f3bd83317878bd024c53ee29c5p@chr9:69315761..69315767, +
1.34e-47FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bba97d02752fdda6d70c501c6e0c4652p@chr12:86771033..86771037, -
1.34e-47FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bba97d02752fdda6d70c501c6e0c4652p@chr12:86771033..86771037, -
1.54e-46FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_197ee53a2f4e7946f4eed2b83a6900d1p@chr5:145119593..145119596, +
1.54e-46FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_197ee53a2f4e7946f4eed2b83a6900d1p@chr5:145119593..145119596, +
2.02e-46FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_126ef5a0d8df98975063f6f7e19f8443p@chr13:49066571..49066574, -
2.02e-46FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_126ef5a0d8df98975063f6f7e19f8443p@chr13:49066571..49066574, -
3.03e-46FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_fdf1dbaf1fe4e1445c667e18615c9668p@chr11:96797681..96797709, -
3.03e-46FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_fdf1dbaf1fe4e1445c667e18615c9668p@chr11:96797681..96797709, -
5.14e-46FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_d221d279c81d41e36dd563b08c1dad23p@chr18:36576247..36576252, -
5.14e-46FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_d221d279c81d41e36dd563b08c1dad23p@chr18:36576247..36576252, -
8.93e-46FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_32d03b7d06767ae23684c5f8fd5d8bcep@chr9:66888939..66888949, +
8.93e-46FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_32d03b7d06767ae23684c5f8fd5d8bcep@chr9:66888939..66888949, +
9.75e-45FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_797e59de150583da8fa3a889d86af3abp@chr9:35801527..35801540, +
9.75e-45FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_797e59de150583da8fa3a889d86af3abp@chr9:35801527..35801540, +
1.39e-43FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_742fd2a5303950f9610ed6e844ebdafbp@chr7:52317191..52317193, +
1.39e-43FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_742fd2a5303950f9610ed6e844ebdafbp@chr7:52317191..52317193, +
1.74e-43FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_275695f35b4f699d2f94fb170614f736p@chr5:135442713..135442733, +
1.74e-43FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_275695f35b4f699d2f94fb170614f736p@chr5:135442713..135442733, +
2.14e-43FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_20cd4a444eba5e82e8fdb8191284f212p@chr2:38781010..38781017, +
2.14e-43FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_20cd4a444eba5e82e8fdb8191284f212p@chr2:38781010..38781017, +
1.22e-42FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_c67d067ae6b275ebafe82afdd9c3979fp@chr10:80565428..80565433, +
1.22e-42FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_c67d067ae6b275ebafe82afdd9c3979fp@chr10:80565428..80565433, +
2.27e-42FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_9d16b62671a0b6ee9866a03d6fbe7763p@chr11:35759012..35759018, +
2.27e-42FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_9d16b62671a0b6ee9866a03d6fbe7763p@chr11:35759012..35759018, +
2.91e-42FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_cc460b2210663dcf2426b3bca782d4fep@chr18:66636209..66636215, -
2.91e-42FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_cc460b2210663dcf2426b3bca782d4fep@chr18:66636209..66636215, -
3.29e-42FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_9998eb673505dd6a3d667b8de865ae89p@chr16:78268076..78268083, -
3.29e-42FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_9998eb673505dd6a3d667b8de865ae89p@chr16:78268076..78268083, -
5.97e-41FFCP PHASE1:Mm9::chr1:88423123..88423134,-#_1d6e686a246b0de347198109b842e2aap@chr1:88423123..88423134, -
5.97e-41FFCP PHASE2:Mm9::chr1:88423123..88423134,-#_1d6e686a246b0de347198109b842e2aap@chr1:88423123..88423134, -
6.63e-41FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_2989b78f9b5b30683c9c0da3a3bc738dp@chr16:30055801..30055806, +
6.63e-41FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_2989b78f9b5b30683c9c0da3a3bc738dp@chr16:30055801..30055806, +
6.83e-41FFCP PHASE1:Mm9::chr3:89262676..89262696,-#_92da414940609762803f27476f57510fp@chr3:89262676..89262696, -
6.83e-41FFCP PHASE2:Mm9::chr3:89262676..89262696,-#_92da414940609762803f27476f57510fp@chr3:89262676..89262696, -
9.12e-41FFCP PHASE2:Mm9::chr7:19814309..19814320,+#_9c19f8b0a22797e98434eb50248aa858p@chr7:19814309..19814320, +
9.12e-41FFCP PHASE1:Mm9::chr7:19814309..19814320,+#_9c19f8b0a22797e98434eb50248aa858p@chr7:19814309..19814320, +
1.25e-40FFCP PHASE2:Mm9::chr16:91548532..91548555,-#_45dff7018f3b108974198310a194011fp@chr16:91548532..91548555, -
1.25e-40FFCP PHASE1:Mm9::chr16:91548532..91548555,-#_45dff7018f3b108974198310a194011fp@chr16:91548532..91548555, -
3.99e-40FFCP PHASE2:Mm9::chr15:77670701..77670706,+#_4a4bc1934ffc3f2dd8375d88dc24917dp@chr15:77670701..77670706, +
3.99e-40FFCP PHASE1:Mm9::chr15:77670701..77670706,+#_4a4bc1934ffc3f2dd8375d88dc24917dp@chr15:77670701..77670706, +
6.64e-40FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr3:126314780..126314810, -
6.64e-40FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr5:32270354..32270364, -
6.64e-40FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr3:126314780..126314810, -
6.64e-40FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr5:32270354..32270364, -
2.17e-39FFCP PHASE1:Mm9::chr12:111682896..111682907,+#_e07289f41c78e98929f7a36977fa0d58p@chr12:111682896..111682907, +
2.17e-39FFCP PHASE2:Mm9::chr12:111682896..111682907,+#_e07289f41c78e98929f7a36977fa0d58p@chr12:111682896..111682907, +
2.66e-39FFCP PHASE1:Mm9::chr1:90912298..90912303,+#_bcb0ef12a11eae5f4b0d2209a4bd0b34p3@1700067G17Rik
2.66e-39FFCP PHASE2:Mm9::chr1:90912298..90912303,+#_bcb0ef12a11eae5f4b0d2209a4bd0b34p3@1700067G17Rik
2.73e-39FFCP PHASE2:Mm9::chr2:84491058..84491102,+#_992d59fea71cbd47bf5e57e599cc49c5p@chr2:84491058..84491102, +
2.73e-39FFCP PHASE1:Mm9::chr2:84491058..84491102,+#_992d59fea71cbd47bf5e57e599cc49c5p@chr2:84491058..84491102, +
3.46e-39FFCP PHASE2:Mm9::chr15:100568814..100568821,-#_1f1b10aaff8d0c4a2454ea0d444b37afp@chr15:100568814..100568821, -
3.46e-39FFCP PHASE1:Mm9::chr15:100568814..100568821,-#_1f1b10aaff8d0c4a2454ea0d444b37afp@chr15:100568814..100568821, -
1.14e-38FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_3af5dd4ceb0ed4adcfa47dd8a1533406p@chr2:167904248..167904260, +
1.14e-38FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_3af5dd4ceb0ed4adcfa47dd8a1533406p@chr2:167904248..167904260, +
1.26e-38FFCP PHASE1:Mm9::chr10:19251573..19251584,+#_3ad046d75c56d81cdcc0ebf16df8144bp@chr10:19251573..19251584, +
1.26e-38FFCP PHASE2:Mm9::chr10:19251573..19251584,+#_3ad046d75c56d81cdcc0ebf16df8144bp@chr10:19251573..19251584, +
1.88e-38FFCP PHASE1:Mm9::chr9:66888952..66888964,+#_c9a58d650dcf00a3a2e13717f0fdb224p@chr9:66888952..66888964, +
1.88e-38FFCP PHASE2:Mm9::chr9:66888952..66888964,+#_c9a58d650dcf00a3a2e13717f0fdb224p@chr9:66888952..66888964, +
5.07e-38FFCP PHASE1:Mm9::chr1:36331417..36331462,+#_2d1b3fac92cc1f1a22f55ebbcaeb511bp@chr1:36331417..36331462, +
5.07e-38FFCP PHASE2:Mm9::chr1:36331417..36331462,+#_2d1b3fac92cc1f1a22f55ebbcaeb511bp@chr1:36331417..36331462, +
7.0e-37FFCP PHASE1:Mm9::chr8:126155114..126155118,+#_2668b6b21bd74f9012d7fbcdfa87142ep1@uc009nwl.1
7.0e-37FFCP PHASE2:Mm9::chr15:83305098..83305104,+#_2668b6b21bd74f9012d7fbcdfa87142ep@chr15:83305098..83305104, +
7.0e-37FFCP PHASE1:Mm9::chr15:83305098..83305104,+#_2668b6b21bd74f9012d7fbcdfa87142ep@chr15:83305098..83305104, +
7.0e-37FFCP PHASE2:Mm9::chr8:126155114..126155118,+#_2668b6b21bd74f9012d7fbcdfa87142ep1@uc009nwl.1
1.47e-36FFCP PHASE1:Mm9::chr7:20335303..20335317,+#_78acfe9601bcb187575582cbd063b0ffp@chr7:20335303..20335317, +
1.47e-36FFCP PHASE2:Mm9::chr7:20335303..20335317,+#_78acfe9601bcb187575582cbd063b0ffp@chr7:20335303..20335317, +
1.61e-36FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_3b0b23e3b0ae6a656963e5a6f96bd93ep@chr5:135442349..135442362, -
1.61e-36FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_3b0b23e3b0ae6a656963e5a6f96bd93ep@chr5:135442349..135442362, -
2.8e-36FFCP PHASE1:Mm9::chrX:96331285..96331289,-#_abe8129c850f1947dc3861bf34bf77bep@chrX:96331285..96331289, -
2.8e-36FFCP PHASE2:Mm9::chrX:96331285..96331289,-#_abe8129c850f1947dc3861bf34bf77bep@chrX:96331285..96331289, -
3.43e-36FFCP PHASE2:Mm9::chr5:145015979..145015991,-#_162d0e8b1bf259b48abd955dd8bc7563p@chr5:145015979..145015991, -
3.43e-36FFCP PHASE1:Mm9::chr5:145015979..145015991,-#_162d0e8b1bf259b48abd955dd8bc7563p@chr5:145015979..145015991, -
3.43e-36FFCP PHASE2:Mm9::chr4:62163210..62163216,-#_162d0e8b1bf259b48abd955dd8bc7563p3@Hdhd3
3.43e-36FFCP PHASE1:Mm9::chr4:62163210..62163216,-#_162d0e8b1bf259b48abd955dd8bc7563p3@Hdhd3
4.38e-36FFCP PHASE1:Mm9::chr7:29382208..29382215,+#_37beb8bc87e7caf32034b0f6a3eb02c3p@chr7:29382208..29382215, +
4.38e-36FFCP PHASE2:Mm9::chr7:29382208..29382215,+#_37beb8bc87e7caf32034b0f6a3eb02c3p@chr7:29382208..29382215, +
5.78e-36FFCP PHASE1:Mm9::chr14:73507116..73507118,+#_e8be2b4aa0a65058c510e685507dfd61p@chr14:73507116..73507118, +
5.78e-36FFCP PHASE2:Mm9::chr14:73507116..73507118,+#_e8be2b4aa0a65058c510e685507dfd61p@chr14:73507116..73507118, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[CARO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000485&oldid=3277127"