Personal tools

UBERON:0002784

From FANTOM5_SSTAR

Revision as of 17:35, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:regional part of diencephalon
Namespace:FANTOM
Definition:"A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62005

NIF_GrossAnatomy:birnlex_1685
Synonyms: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
"anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"between brain anatomical structure of brain" EXACT [OBOL:automatic]
"between brain biological structure of brain" EXACT [OBOL:automatic]
"between brain brain anatomical structure" EXACT [OBOL:automatic]
"between brain brain biological structure" EXACT [OBOL:automatic]
"between brain neuraxis segment" EXACT [OBOL:automatic]
"between brain regional part of brain" EXACT [OBOL:automatic]
"between brain segment of brain" EXACT [OBOL:automatic]
"biological structure of brain of between brain" EXACT [OBOL:automatic]
"biological structure of brain of diencephalon" EXACT [OBOL:automatic]
"biological structure of brain of interbrain" EXACT [OBOL:automatic]
"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of between brain" EXACT [OBOL:automatic]
"brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of interbrain" EXACT [OBOL:automatic]
"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
"brain biological structure of between brain" EXACT [OBOL:automatic]
"brain biological structure of diencephalon" EXACT [OBOL:automatic]
"brain biological structure of interbrain" EXACT [OBOL:automatic]
"brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
"diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"diencephalon biological structure of brain" EXACT [OBOL:automatic]
"diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"diencephalon brain biological structure" EXACT [OBOL:automatic]
"diencephalon neuraxis segment" EXACT [OBOL:automatic]
"diencephalon regional part of brain" EXACT [OBOL:automatic]
"diencephalon segment" EXACT [FMA:62005]
"diencephalon segment of brain" EXACT [OBOL:automatic]
"interbrain anatomical structure of brain" EXACT [OBOL:automatic]
"interbrain biological structure of brain" EXACT [OBOL:automatic]
"interbrain brain anatomical structure" EXACT [OBOL:automatic]
"interbrain brain biological structure" EXACT [OBOL:automatic]
"interbrain neuraxis segment" EXACT [OBOL:automatic]
"interbrain regional part of brain" EXACT [OBOL:automatic]
"interbrain segment of brain" EXACT [OBOL:automatic]
"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"mature diencephalon brain biological structure" EXACT [OBOL:automatic]
"mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
"mature diencephalon regional part of brain" EXACT [OBOL:automatic]
"mature diencephalon segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of between brain" EXACT [OBOL:automatic]
"neuraxis segment of diencephalon" EXACT [OBOL:automatic]
"neuraxis segment of interbrain" EXACT [OBOL:automatic]
"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
"regional part of brain of between brain" EXACT [OBOL:automatic]
"regional part of brain of diencephalon" EXACT [OBOL:automatic]
"regional part of brain of interbrain" EXACT [OBOL:automatic]
"regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of brain of between brain" EXACT [OBOL:automatic]
"segment of brain of diencephalon" EXACT [OBOL:automatic]
"segment of brain of interbrain" EXACT [OBOL:automatic]
"segment of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002780(regional part of forebrain)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.76e-110FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
2.76e-110FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
1.55e-98FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18039672..18039678, -
1.55e-98FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:87751918..87751928, -
1.55e-98FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_d4b612b81135e7d6f100ad68e256a789p3@ENST00000514282
1.55e-98FFCP PHASE2:Hg19::chr3:54952432..54952459,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952432..54952459, -
1.55e-98FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_d4b612b81135e7d6f100ad68e256a789p@chr14:49512240..49512248, -
1.55e-98FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9228468..9228494, -
1.55e-98FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:45782001..45782009, +
1.55e-98FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:101038595..101038604, -
1.55e-98FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504405..135504410, -
1.55e-98FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066399..18066411, -
1.55e-98FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135472861..135472868, -
1.55e-98FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18063669..18063678, -
1.55e-98FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:100942645..100942655, -
1.55e-98FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_d4b612b81135e7d6f100ad68e256a789p2@PLCL2-AS1
1.55e-98FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_d4b612b81135e7d6f100ad68e256a789p@chr10:80984180..80984190, -
1.55e-98FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:17930871..17930877, -
1.55e-98FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066399..18066411, -
1.55e-98FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:32468385..32468392, -
1.55e-98FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_d4b612b81135e7d6f100ad68e256a789p@chr5:119868809..119868839, +
1.55e-98FFCP PHASE2:Hg19::chr7:9178561..9178568,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9178561..9178568, -
1.55e-98FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_d4b612b81135e7d6f100ad68e256a789p5@AANAT
1.55e-98FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:56582028..56582062, +
1.55e-98FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_d4b612b81135e7d6f100ad68e256a789p@chr4:1188439..1188454, -
1.55e-98FFCP PHASE2:Hg19::chr8:116127086..116127103,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:116127086..116127103, +
1.55e-98FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_d4b612b81135e7d6f100ad68e256a789p@chr7:9782610..9782613, +
1.55e-98FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_d4b612b81135e7d6f100ad68e256a789p@chr14:49512240..49512248, -
1.55e-98FFCP PHASE1:Hg19::chr2:17185712..17185735,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17185712..17185735, +
1.55e-98FFCP PHASE2:Hg19::chr2:216447404..216447411,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000457625
1.55e-98FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_d4b612b81135e7d6f100ad68e256a789p5@AANAT
1.55e-98FFCP PHASE2:Hg19::chr11:18041206..18041211,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18041206..18041211, -
1.55e-98FFCP PHASE1:Hg19::chr2:108616342..108616384,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:108616342..108616384, +
1.55e-98FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:45782001..45782009, +
1.55e-98FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56963093..56963105, -
1.55e-98FFCP PHASE2:Hg19::chr11:18063707..18063720,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18063707..18063720, -
1.55e-98FFCP PHASE2:Hg19::chr11:74951707..74951719,+#_d4b612b81135e7d6f100ad68e256a789p9@LOC100507050
1.55e-98FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17075761..17075773, +
1.55e-98FFCP PHASE2:Hg19::chr1:99798419..99798422,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99798419..99798422, -
1.55e-98FFCP PHASE2:Hg19::chr5:119799539..119799543,+#_d4b612b81135e7d6f100ad68e256a789p13@PRR16
1.55e-98FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_d4b612b81135e7d6f100ad68e256a789p@chr11:84530787..84530803, +
1.55e-98FFCP PHASE1:Hg19::chr5:135732675..135732680,-#_d4b612b81135e7d6f100ad68e256a789p3@ENST00000514282
1.55e-98FFCP PHASE1:Hg19::chr3:54952432..54952459,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952432..54952459, -
1.55e-98FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:17930871..17930877, -
1.55e-98FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56963093..56963105, -
1.55e-98FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE2:Hg19::chr8:135473205..135473218,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473205..135473218, -
1.55e-98FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57975398..57975401, +
1.55e-98FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_d4b612b81135e7d6f100ad68e256a789p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135472861..135472868, -
1.55e-98FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:137539895..137539904, +
1.55e-98FFCP PHASE2:Hg19::chr8:135515939..135515941,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135515939..135515941, +
1.55e-98FFCP PHASE1:Hg19::chr7:120969099..120969104,+#_d4b612b81135e7d6f100ad68e256a789p3@WNT16
1.55e-98FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:87751931..87751947, -
1.55e-98FFCP PHASE2:Hg19::chr12:49621658..49621666,+#_d4b612b81135e7d6f100ad68e256a789p21@TUBA1C
1.55e-98FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:100942645..100942655, -
1.55e-98FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066319..18066337, -
1.55e-98FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_d4b612b81135e7d6f100ad68e256a789p8@SLC5A7
1.55e-98FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000457625
1.55e-98FFCP PHASE2:Hg19::chr2:17065916..17065929,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17065916..17065929, +
1.55e-98FFCP PHASE2:Hg19::chr8:135474173..135474185,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135474173..135474185, -
1.55e-98FFCP PHASE1:Hg19::chr7:9178561..9178568,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9178561..9178568, -
1.55e-98FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:56628524..56628547, -
1.55e-98FFCP PHASE2:Hg19::chr14:57197193..57197194,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000554597
1.55e-98FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:116127086..116127103, +
1.55e-98FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_d4b612b81135e7d6f100ad68e256a789p@chr7:9782610..9782613, +
1.55e-98FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99798419..99798422, -
1.55e-98FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18041199..18041200, -
1.55e-98FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_d4b612b81135e7d6f100ad68e256a789p13@PRR16
1.55e-98FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:55422293..55422300, +
1.55e-98FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:120842768..120842790, -
1.55e-98FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:1210506..1210513, -
1.55e-98FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066319..18066337, -
1.55e-98FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18040537..18040547, -
1.55e-98FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:87751931..87751947, -
1.55e-98FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473472..135473477, -
1.55e-98FFCP PHASE2:Hg19::chr11:18042584..18042593,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18042584..18042593, -
1.55e-98FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952462..54952471, -
1.55e-98FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:60826120..60826127, +
1.55e-98FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473205..135473218, -
1.55e-98FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57975398..57975401, +
1.55e-98FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_d4b612b81135e7d6f100ad68e256a789p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:56628524..56628547, -
1.55e-98FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:50898038..50898042, -
1.55e-98FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_d4b612b81135e7d6f100ad68e256a789p32@DMD
1.55e-98FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:45782019..45782028, +
1.55e-98FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000554597
1.55e-98FFCP PHASE1:Hg19::chr9:137539895..137539904,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:137539895..137539904, +
1.55e-98FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:15134610..15134617, +
1.55e-98FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135515939..135515941, +
1.55e-98FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_d4b612b81135e7d6f100ad68e256a789p15@CABP1
1.55e-98FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57907030..57907050, +
1.55e-98FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18063707..18063720, -
1.55e-98FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504314..135504320, -
1.55e-98FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:1210506..1210513, -
1.55e-98FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135474173..135474185, -
1.55e-98FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_d4b612b81135e7d6f100ad68e256a789p@chr10:80984180..80984190, -
1.55e-98FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_d4b612b81135e7d6f100ad68e256a789p7@TULP4
1.55e-98FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473983..135473986, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002784&oldid=3277489"