Personal tools

UBERON:0003127

From FANTOM5_SSTAR

Revision as of 11:10, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0003127 |name=open tracheal system trachea |namespace= |def="A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:open tracheal system trachea
Definition:"A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea]
Xrefs:
links:

FBbt:00005043
SPD:0000434

TADS:0000315
Synonyms: "invertebrate trachea" EXACT []
"trachea" BROAD SENSU [FBbt:00005043]
Comments:TODO check if is_a epithelium
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001005(respiratory airway)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003127 (open tracheal system trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr5:180017253..180017257,-#_38310d6b9312bacc82fd954284e7a35cp@chr5:180017253..180017257, -
3.29e-195FFCP PHASE1:Hg19::chr5:180017253..180017257,-#_38310d6b9312bacc82fd954284e7a35cp@chr5:180017253..180017257, -
4.61e-131FFCP PHASE2:Hg19::chr5:180017205..180017215,-#_80ee2a6d011379b97eb48f4b8920d8cdp@chr5:180017205..180017215, -
4.61e-131FFCP PHASE1:Hg19::chr5:180017205..180017215,-#_80ee2a6d011379b97eb48f4b8920d8cdp@chr5:180017205..180017215, -
8.99e-131FFCP PHASE2:Hg19::chr20:31611311..31611316,+#_a2161ed8f9b1c1c4b66a2332808191f1p11@BPIFB6
8.99e-131FFCP PHASE1:Hg19::chr20:31611311..31611316,+#_a2161ed8f9b1c1c4b66a2332808191f1p11@BPIFB6
1.75e-130FFCP PHASE2:Hg19::chr16:57200962..57200982,-#_decf0c1393aac404ade3a6451846a2b8p@chr16:57200962..57200982, -
1.75e-130FFCP PHASE2:Hg19::chr10:23721618..23721620,+#_decf0c1393aac404ade3a6451846a2b8p@chr10:23721618..23721620, +
1.75e-130FFCP PHASE2:Hg19::chr17:70023350..70023353,-#_decf0c1393aac404ade3a6451846a2b8p@chr17:70023350..70023353, -
1.75e-130FFCP PHASE1:Hg19::chr10:23721618..23721620,+#_decf0c1393aac404ade3a6451846a2b8p@chr10:23721618..23721620, +
1.75e-130FFCP PHASE1:Hg19::chr16:57200962..57200982,-#_decf0c1393aac404ade3a6451846a2b8p@chr16:57200962..57200982, -
1.75e-130FFCP PHASE1:Hg19::chr17:70023350..70023353,-#_decf0c1393aac404ade3a6451846a2b8p@chr17:70023350..70023353, -
5.68e-99FFCP PHASE2:Hg19::chr12:10998450..10998451,+#_1ecedc200b36459be30b8828a90e6cbbp@chr12:10998450..10998451, +
5.68e-99FFCP PHASE1:Hg19::chr12:10998450..10998451,+#_1ecedc200b36459be30b8828a90e6cbbp@chr12:10998450..10998451, +
9.38e-99FFCP PHASE2:Hg19::chr16:83837409..83837435,-#_9764793f260f22922721a357cf10e23ap@chr16:83837409..83837435, -
9.38e-99FFCP PHASE1:Hg19::chr16:83837409..83837435,-#_9764793f260f22922721a357cf10e23ap@chr16:83837409..83837435, -
1.55e-98FFCP PHASE2:Hg19::chr1:168808636..168808640,+#_e9ebe19e72782050c5f89e354a3bf796p@chr1:168808636..168808640, +
1.55e-98FFCP PHASE2:Hg19::chr20:31889078..31889083,+#_e9ebe19e72782050c5f89e354a3bf796p@chr20:31889078..31889083, +
1.55e-98FFCP PHASE2:Hg19::chr18:36308334..36308341,-#_e9ebe19e72782050c5f89e354a3bf796p@chr18:36308334..36308341, -
1.55e-98FFCP PHASE2:Hg19::chr11:1276056..1276069,+#_e9ebe19e72782050c5f89e354a3bf796p@chr11:1276056..1276069, +
1.55e-98FFCP PHASE1:Hg19::chr11:1276056..1276069,+#_e9ebe19e72782050c5f89e354a3bf796p@chr11:1276056..1276069, +
1.55e-98FFCP PHASE1:Hg19::chr14:78021251..78021260,-#_e9ebe19e72782050c5f89e354a3bf796p8@SPTLC2
1.55e-98FFCP PHASE1:Hg19::chr4:48422304..48422310,+#_e9ebe19e72782050c5f89e354a3bf796p@chr4:48422304..48422310, +
1.55e-98FFCP PHASE2:Hg19::chr14:29082860..29082866,-#_e9ebe19e72782050c5f89e354a3bf796p2@ENST00000549742
1.55e-98FFCP PHASE1:Hg19::chr3:112521387..112521398,+#_e9ebe19e72782050c5f89e354a3bf796p2@ENST00000519700
1.55e-98FFCP PHASE1:Hg19::chr18:36308334..36308341,-#_e9ebe19e72782050c5f89e354a3bf796p@chr18:36308334..36308341, -
1.55e-98FFCP PHASE1:Hg19::chr13:36191669..36191680,+#_e9ebe19e72782050c5f89e354a3bf796p@chr13:36191669..36191680, +
1.55e-98FFCP PHASE2:Hg19::chr20:31823292..31823295,+#_e9ebe19e72782050c5f89e354a3bf796p@chr20:31823292..31823295, +
1.55e-98FFCP PHASE2:Hg19::chr20:56562819..56562826,-#_e9ebe19e72782050c5f89e354a3bf796p@chr20:56562819..56562826, -
1.55e-98FFCP PHASE1:Hg19::chr15:82555201..82555210,+#_e9ebe19e72782050c5f89e354a3bf796p5@FAM154B
1.55e-98FFCP PHASE1:Hg19::chr1:168808636..168808640,+#_e9ebe19e72782050c5f89e354a3bf796p@chr1:168808636..168808640, +
1.55e-98FFCP PHASE2:Hg19::chr4:16125001..16125013,-#_e9ebe19e72782050c5f89e354a3bf796p@chr4:16125001..16125013, -
1.55e-98FFCP PHASE2:Hg19::chr20:31873942..31873945,+#_e9ebe19e72782050c5f89e354a3bf796p16@BPIFB1
1.55e-98FFCP PHASE1:Hg19::chr20:31889078..31889083,+#_e9ebe19e72782050c5f89e354a3bf796p@chr20:31889078..31889083, +
1.55e-98FFCP PHASE2:Hg19::chr14:78021251..78021260,-#_e9ebe19e72782050c5f89e354a3bf796p8@SPTLC2
1.55e-98FFCP PHASE2:Hg19::chr6:3378254..3378263,-#_e9ebe19e72782050c5f89e354a3bf796p27@SLC22A23
1.55e-98FFCP PHASE2:Hg19::chr5:61897065..61897090,+#_e9ebe19e72782050c5f89e354a3bf796p9@IPO11
1.55e-98FFCP PHASE2:Hg19::chr5:180017106..180017107,+#_e9ebe19e72782050c5f89e354a3bf796p@chr5:180017106..180017107, +
1.55e-98FFCP PHASE2:Hg19::chr9:79302945..79302964,-#_e9ebe19e72782050c5f89e354a3bf796p@chr9:79302945..79302964, -
1.55e-98FFCP PHASE2:Hg19::chr13:36191669..36191680,+#_e9ebe19e72782050c5f89e354a3bf796p@chr13:36191669..36191680, +
1.55e-98FFCP PHASE2:Hg19::chr1:182286732..182286752,-#_e9ebe19e72782050c5f89e354a3bf796p@chr1:182286732..182286752, -
1.55e-98FFCP PHASE2:Hg19::chr6:47708489..47708493,-#_e9ebe19e72782050c5f89e354a3bf796p1@ENST00000446733
1.55e-98FFCP PHASE2:Hg19::chr9:35563541..35563550,-#_e9ebe19e72782050c5f89e354a3bf796p5@FAM166B
1.55e-98FFCP PHASE2:Hg19::chr20:58533512..58533522,+#_e9ebe19e72782050c5f89e354a3bf796p6@CDH26
1.55e-98FFCP PHASE1:Hg19::chr20:31823292..31823295,+#_e9ebe19e72782050c5f89e354a3bf796p@chr20:31823292..31823295, +
1.55e-98FFCP PHASE2:Hg19::chr12:55137687..55137694,+#_e9ebe19e72782050c5f89e354a3bf796p@chr12:55137687..55137694, +
1.55e-98FFCP PHASE2:Hg19::chr15:82555201..82555210,+#_e9ebe19e72782050c5f89e354a3bf796p5@FAM154B
1.55e-98FFCP PHASE1:Hg19::chr12:55137687..55137694,+#_e9ebe19e72782050c5f89e354a3bf796p@chr12:55137687..55137694, +
1.55e-98FFCP PHASE1:Hg19::chr20:56562819..56562826,-#_e9ebe19e72782050c5f89e354a3bf796p@chr20:56562819..56562826, -
1.55e-98FFCP PHASE2:Hg19::chr11:1247457..1247468,+#_e9ebe19e72782050c5f89e354a3bf796p@chr11:1247457..1247468, +
1.55e-98FFCP PHASE2:Hg19::chr4:48422304..48422310,+#_e9ebe19e72782050c5f89e354a3bf796p@chr4:48422304..48422310, +
1.55e-98FFCP PHASE1:Hg19::chr4:16125001..16125013,-#_e9ebe19e72782050c5f89e354a3bf796p@chr4:16125001..16125013, -
1.55e-98FFCP PHASE2:Hg19::chr3:112521387..112521398,+#_e9ebe19e72782050c5f89e354a3bf796p2@ENST00000519700
1.55e-98FFCP PHASE1:Hg19::chr20:31873942..31873945,+#_e9ebe19e72782050c5f89e354a3bf796p16@BPIFB1
1.55e-98FFCP PHASE1:Hg19::chr5:180017106..180017107,+#_e9ebe19e72782050c5f89e354a3bf796p@chr5:180017106..180017107, +
1.55e-98FFCP PHASE1:Hg19::chr11:1247457..1247468,+#_e9ebe19e72782050c5f89e354a3bf796p@chr11:1247457..1247468, +
1.55e-98FFCP PHASE1:Hg19::chr6:3378254..3378263,-#_e9ebe19e72782050c5f89e354a3bf796p27@SLC22A23
1.55e-98FFCP PHASE1:Hg19::chr5:61897065..61897090,+#_e9ebe19e72782050c5f89e354a3bf796p9@IPO11
1.55e-98FFCP PHASE2:Hg19::chr12:55137725..55137730,+#_e9ebe19e72782050c5f89e354a3bf796p@chr12:55137725..55137730, +
1.55e-98FFCP PHASE1:Hg19::chr9:79302945..79302964,-#_e9ebe19e72782050c5f89e354a3bf796p@chr9:79302945..79302964, -
1.55e-98FFCP PHASE1:Hg19::chr14:29082860..29082866,-#_e9ebe19e72782050c5f89e354a3bf796p2@ENST00000549742
1.55e-98FFCP PHASE1:Hg19::chr12:55137725..55137730,+#_e9ebe19e72782050c5f89e354a3bf796p@chr12:55137725..55137730, +
1.55e-98FFCP PHASE1:Hg19::chr9:35563541..35563550,-#_e9ebe19e72782050c5f89e354a3bf796p5@FAM166B
1.55e-98FFCP PHASE1:Hg19::chr1:182286732..182286752,-#_e9ebe19e72782050c5f89e354a3bf796p@chr1:182286732..182286752, -
1.55e-98FFCP PHASE1:Hg19::chr6:47708489..47708493,-#_e9ebe19e72782050c5f89e354a3bf796p1@ENST00000446733
1.55e-98FFCP PHASE1:Hg19::chr20:58533512..58533522,+#_e9ebe19e72782050c5f89e354a3bf796p6@CDH26
2.56e-98FFCP PHASE2:Hg19::chr11:1251248..1251255,+#_7b72acb4ad152b18e278e54cc5f13906p@chr11:1251248..1251255, +
2.56e-98FFCP PHASE1:Hg19::chr11:1251248..1251255,+#_7b72acb4ad152b18e278e54cc5f13906p@chr11:1251248..1251255, +
1.05e-79FFCP PHASE1:Hg19::chr2:180524914..180524925,-#_d315f5baae6d1cf3f12f0b95bd2ce01cp17@ZNF385B
1.05e-79FFCP PHASE2:Hg19::chr5:180017672..180017683,-#_d315f5baae6d1cf3f12f0b95bd2ce01cp11@SCGB3A1
1.05e-79FFCP PHASE2:Hg19::chr2:180524914..180524925,-#_d315f5baae6d1cf3f12f0b95bd2ce01cp17@ZNF385B
1.05e-79FFCP PHASE1:Hg19::chr5:180017672..180017683,-#_d315f5baae6d1cf3f12f0b95bd2ce01cp11@SCGB3A1
2.34e-79FFCP PHASE1:Hg19::chr20:31887696..31887715,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:31887696..31887715, +
2.34e-79FFCP PHASE2:Hg19::chr20:31897630..31897644,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:31897630..31897644, +
2.34e-79FFCP PHASE2:Hg19::chr3:182983174..182983185,+#_d4b3074754dd0a9a2fedfa16f5f61979p30@B3GNT5
2.34e-79FFCP PHASE1:Hg19::chr6:10691162..10691202,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr6:10691162..10691202, +
2.34e-79FFCP PHASE2:Hg19::chr6:139135648..139135664,+#_d4b3074754dd0a9a2fedfa16f5f61979p3@ECT2L
2.34e-79FFCP PHASE1:Hg19::chr20:31897630..31897644,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:31897630..31897644, +
2.34e-79FFCP PHASE1:Hg19::chr3:182983174..182983185,+#_d4b3074754dd0a9a2fedfa16f5f61979p30@B3GNT5
2.34e-79FFCP PHASE2:Hg19::chr20:44171301..44171317,-#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:44171301..44171317, -
2.34e-79FFCP PHASE2:Hg19::chr20:31887696..31887715,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:31887696..31887715, +
2.34e-79FFCP PHASE1:Hg19::chr14:29082844..29082855,-#_d4b3074754dd0a9a2fedfa16f5f61979p1@ENST00000549742
2.34e-79FFCP PHASE1:Hg19::chr6:139135648..139135664,+#_d4b3074754dd0a9a2fedfa16f5f61979p3@ECT2L
2.34e-79FFCP PHASE1:Hg19::chr20:44171301..44171317,-#_d4b3074754dd0a9a2fedfa16f5f61979p@chr20:44171301..44171317, -
2.34e-79FFCP PHASE2:Hg19::chr6:10691162..10691202,+#_d4b3074754dd0a9a2fedfa16f5f61979p@chr6:10691162..10691202, +
2.34e-79FFCP PHASE2:Hg19::chr14:29082844..29082855,-#_d4b3074754dd0a9a2fedfa16f5f61979p1@ENST00000549742
3.49e-79FFCP PHASE2:Hg19::chr11:1249793..1249803,+#_be52b93cc82e70608fa5746610f4208fp25@MUC5B
3.49e-79FFCP PHASE1:Hg19::chr11:1249793..1249803,+#_be52b93cc82e70608fa5746610f4208fp25@MUC5B
7.41e-67FFCP PHASE1:Hg19::chr20:44171371..44171387,-#_fc6b1634d0d7b19ab213fe1064185f05p@chr20:44171371..44171387, -
7.41e-67FFCP PHASE2:Hg19::chr20:44171371..44171387,-#_fc6b1634d0d7b19ab213fe1064185f05p@chr20:44171371..44171387, -
1.45e-66FFCP PHASE1:Hg19::chr9:140331458..140331471,-#_3d64abf089f35f6c405f77e74e44447dp@chr9:140331458..140331471, -
1.45e-66FFCP PHASE1:Hg19::chr7:31553698..31553709,+#_3d64abf089f35f6c405f77e74e44447dp2@CCDC129
1.45e-66FFCP PHASE1:Hg19::chr9:140331478..140331491,-#_3d64abf089f35f6c405f77e74e44447dp@chr9:140331478..140331491, -
1.45e-66FFCP PHASE2:Hg19::chr18:24804022..24804043,+#_3d64abf089f35f6c405f77e74e44447dp@chr18:24804022..24804043, +
1.45e-66FFCP PHASE1:Hg19::chr18:24804022..24804043,+#_3d64abf089f35f6c405f77e74e44447dp@chr18:24804022..24804043, +
1.45e-66FFCP PHASE1:Hg19::chr11:1283125..1283153,+#_3d64abf089f35f6c405f77e74e44447dp@chr11:1283125..1283153, +
1.45e-66FFCP PHASE2:Hg19::chr9:140331458..140331471,-#_3d64abf089f35f6c405f77e74e44447dp@chr9:140331458..140331471, -
1.45e-66FFCP PHASE2:Hg19::chr11:1283125..1283153,+#_3d64abf089f35f6c405f77e74e44447dp@chr11:1283125..1283153, +
1.45e-66FFCP PHASE2:Hg19::chr7:31553698..31553709,+#_3d64abf089f35f6c405f77e74e44447dp2@CCDC129
1.45e-66FFCP PHASE2:Hg19::chr9:140331478..140331491,-#_3d64abf089f35f6c405f77e74e44447dp@chr9:140331478..140331491, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003127&oldid=414981"