Personal tools

UBERON:0005418

From FANTOM5_SSTAR

Revision as of 11:15, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0005418 |name=hindlimb bud |namespace= |def="A limb bud that develops into a hindlimb." [OBOL:automatic] |xref=AAO:0010382;;EHDAA:2358;;EMAPA:16779;;M...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:hindlimb bud
Definition:"A limb bud that develops into a hindlimb." [OBOL:automatic]
Xrefs:
links:

AAO:0010382
EHDAA:2358
EMAPA:16779
MIAA:0000256
RETIRED_EHDAA2:0003197
SCTID:346164003

XAO:0003066
Synonyms: "hind limb bud" EXACT [XAO:0003066]
"leg bud" RELATED []
"limb bud - hindlimb" RELATED []
"posterior limb bud" EXACT [SCTID:346164003]
Comments:Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick.

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004347(limb bud),UBERON:0005420(pelvic appendage bud)
part_of:UBERON:0000154(posterior region of body)



Children

is a:FF:0000244 (chicken leg bud day3 HH20)
develops from:UBERON:0002103 (hindlimb),UBERON:0006871 (footplate)
part of:FF:0000244 (chicken leg bud day3 HH20)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005418 (hindlimb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_2e8df9be5fce4d0f4c0d383be5c89b7dp@chr11:3691037..3691040, +
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_283554661e9418fb4cd0a6c96553646cp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_283554661e9418fb4cd0a6c96553646cp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_283554661e9418fb4cd0a6c96553646cp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_283554661e9418fb4cd0a6c96553646cp54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_283554661e9418fb4cd0a6c96553646cp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_283554661e9418fb4cd0a6c96553646cp104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_283554661e9418fb4cd0a6c96553646cp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_283554661e9418fb4cd0a6c96553646cp7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_283554661e9418fb4cd0a6c96553646cp108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_283554661e9418fb4cd0a6c96553646cp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_283554661e9418fb4cd0a6c96553646cp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_283554661e9418fb4cd0a6c96553646cp@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_283554661e9418fb4cd0a6c96553646cp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_283554661e9418fb4cd0a6c96553646cp@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_283554661e9418fb4cd0a6c96553646cp@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_283554661e9418fb4cd0a6c96553646cp93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_283554661e9418fb4cd0a6c96553646cp77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_283554661e9418fb4cd0a6c96553646cp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_283554661e9418fb4cd0a6c96553646cp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_283554661e9418fb4cd0a6c96553646cp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_283554661e9418fb4cd0a6c96553646cp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_283554661e9418fb4cd0a6c96553646cp46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_283554661e9418fb4cd0a6c96553646cp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_283554661e9418fb4cd0a6c96553646cp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_283554661e9418fb4cd0a6c96553646cp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_283554661e9418fb4cd0a6c96553646cp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_283554661e9418fb4cd0a6c96553646cp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_283554661e9418fb4cd0a6c96553646cp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_283554661e9418fb4cd0a6c96553646cp77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_283554661e9418fb4cd0a6c96553646cp54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_283554661e9418fb4cd0a6c96553646cp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_283554661e9418fb4cd0a6c96553646cp@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_283554661e9418fb4cd0a6c96553646cp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_283554661e9418fb4cd0a6c96553646cp93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_283554661e9418fb4cd0a6c96553646cp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_283554661e9418fb4cd0a6c96553646cp104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_283554661e9418fb4cd0a6c96553646cp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_283554661e9418fb4cd0a6c96553646cp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_283554661e9418fb4cd0a6c96553646cp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_283554661e9418fb4cd0a6c96553646cp7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_283554661e9418fb4cd0a6c96553646cp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_283554661e9418fb4cd0a6c96553646cp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_283554661e9418fb4cd0a6c96553646cp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_283554661e9418fb4cd0a6c96553646cp108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_283554661e9418fb4cd0a6c96553646cp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_283554661e9418fb4cd0a6c96553646cp46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_283554661e9418fb4cd0a6c96553646cp@chr2:152520248..152520253, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_08d6fd1fb5d997e5a90d3b391fd10aa3p@chr22:26299595..26299605, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005418&oldid=415266"