Personal tools

UBERON:0006777

From FANTOM5_SSTAR

Revision as of 11:16, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0006777 |name=tectal plate |namespace= |def="embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:tectal plate
Definition:"embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [1]
Xrefs:
links:
FMA:77488
Synonyms: "lamina quadrigemina" EXACT [FMA:77488, FMA:TA]
"quadrigeminal plate" EXACT [FMA:77488]
Comments:The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0002259 (corpora quadrigemina)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006777 (tectal plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_ca9aad28a34e08f291e76955b2cd1d52p@chr1:158200818..158200829, -
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_ca9aad28a34e08f291e76955b2cd1d52p@chr1:158200818..158200829, -
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_0dfb0e3aef064545469e9ae5509209a3p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_0dfb0e3aef064545469e9ae5509209a3p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_0dfb0e3aef064545469e9ae5509209a3p19@Rgs8
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_0dfb0e3aef064545469e9ae5509209a3p@chr15:22719411..22719436, +
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_244574d69532146f2190d783281d09a5p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_244574d69532146f2190d783281d09a5p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_1c913c2ea755a888f9b40f2b22fcbb2cp@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_1c913c2ea755a888f9b40f2b22fcbb2cp@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_1c913c2ea755a888f9b40f2b22fcbb2cp@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_1c913c2ea755a888f9b40f2b22fcbb2cp@chr16:96721083..96721092, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_b7f9ca7deabb3b41dfdfb07ce007ccbdp1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_b7f9ca7deabb3b41dfdfb07ce007ccbdp1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_e51e6ee1421300b132c3963c1a5ae2d8p7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_e51e6ee1421300b132c3963c1a5ae2d8p7@Adipor2
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_dfea5ad82bc27d17e512c87e8d8fe59bp@chr14:52528327..52528336, -
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_dfea5ad82bc27d17e512c87e8d8fe59bp@chr14:52528327..52528336, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_b32cc492cff236f77b854e9c78c219c2p@chr19:32177340..32177351, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_b32cc492cff236f77b854e9c78c219c2p@chr19:32177340..32177351, -
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_be5b93dc543d6fb71dfff9a3fd18654cp@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_be5b93dc543d6fb71dfff9a3fd18654cp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_be5b93dc543d6fb71dfff9a3fd18654cp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_be5b93dc543d6fb71dfff9a3fd18654cp@chr4:98216369..98216408, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_1813389e253d3607efa34bc6b151068dp@chr8:123151369..123151375, +
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_1813389e253d3607efa34bc6b151068dp@chr8:123151369..123151375, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_2d7f5f7b8b4e4dbc68f16ebea522ec55p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_2d7f5f7b8b4e4dbc68f16ebea522ec55p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55p@chr5:128949415..128949424, +
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_7d5b7d86e7d4819d50369394efbe1884p@chr1:101686777..101686780, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_7d5b7d86e7d4819d50369394efbe1884p@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_3ecc32afe0ef231dfff408dff9b1dc78p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_3ecc32afe0ef231dfff408dff9b1dc78p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_3ecc32afe0ef231dfff408dff9b1dc78p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_3ecc32afe0ef231dfff408dff9b1dc78p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_3ecc32afe0ef231dfff408dff9b1dc78p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_3ecc32afe0ef231dfff408dff9b1dc78p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_3ecc32afe0ef231dfff408dff9b1dc78p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_3ecc32afe0ef231dfff408dff9b1dc78p@chr17:69476739..69476749, +
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_f257f709a25398fe6ec2ba3d824cf05fp19@Gas7
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_f257f709a25398fe6ec2ba3d824cf05fp19@Gas7
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_752939a8cab4925ab424b55b0bc6cc7ap1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_752939a8cab4925ab424b55b0bc6cc7ap1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_752939a8cab4925ab424b55b0bc6cc7ap15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_752939a8cab4925ab424b55b0bc6cc7ap@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_752939a8cab4925ab424b55b0bc6cc7ap@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_752939a8cab4925ab424b55b0bc6cc7ap15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr11:55886412..55886420, +
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_752939a8cab4925ab424b55b0bc6cc7ap@chr19:47099743..47099759, +
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_a6a3e999627689a5c605b46ea74e4d8bp@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_a6a3e999627689a5c605b46ea74e4d8bp63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_a6a3e999627689a5c605b46ea74e4d8bp63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_a6a3e999627689a5c605b46ea74e4d8bp@chr16:96720848..96720858, +
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_9534ae9d4003c1e174946c56c466e489p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_9534ae9d4003c1e174946c56c466e489p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_2f33e4aeb2e044b33f34ff133a8821afp2@Ghrh
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_2f33e4aeb2e044b33f34ff133a8821afp2@Ghrh
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_3a0a8fb0edce9912fc2e6af7f0569b05p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_3a0a8fb0edce9912fc2e6af7f0569b05p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_3a0a8fb0edce9912fc2e6af7f0569b05p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_3a0a8fb0edce9912fc2e6af7f0569b05p8@St18
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_3a0a8fb0edce9912fc2e6af7f0569b05p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_3a0a8fb0edce9912fc2e6af7f0569b05p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_3a0a8fb0edce9912fc2e6af7f0569b05p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_3a0a8fb0edce9912fc2e6af7f0569b05p7@Fam169a
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_531de71af880e2e506c49f9ae35717e0p9@Oprm1
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_531de71af880e2e506c49f9ae35717e0p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_531de71af880e2e506c49f9ae35717e0p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_531de71af880e2e506c49f9ae35717e0p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_531de71af880e2e506c49f9ae35717e0p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_531de71af880e2e506c49f9ae35717e0p@chr2:163149068..163149077, +
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_820456d4096a93aee84b2d0ac5794717p6@Skp1a
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_820456d4096a93aee84b2d0ac5794717p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_820456d4096a93aee84b2d0ac5794717p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_820456d4096a93aee84b2d0ac5794717p6@Skp1a
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_457cbbe6e3c26e72813f3fbef4f86be5p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_457cbbe6e3c26e72813f3fbef4f86be5p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_457cbbe6e3c26e72813f3fbef4f86be5p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_457cbbe6e3c26e72813f3fbef4f86be5p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_457cbbe6e3c26e72813f3fbef4f86be5p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_457cbbe6e3c26e72813f3fbef4f86be5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_457cbbe6e3c26e72813f3fbef4f86be5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_457cbbe6e3c26e72813f3fbef4f86be5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_457cbbe6e3c26e72813f3fbef4f86be5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_457cbbe6e3c26e72813f3fbef4f86be5p@chr4:43519210..43519232, +
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_17bce0a3b8aa11520e3fa9750387d102p3@Rgs17
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_17bce0a3b8aa11520e3fa9750387d102p3@Rgs17
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_aaa713101838f99b23ca932b7bf65614p14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_aaa713101838f99b23ca932b7bf65614p14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_aaa713101838f99b23ca932b7bf65614p1@ENSMUST00000124586
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_aaa713101838f99b23ca932b7bf65614p1@ENSMUST00000124586

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006777&oldid=415365"