UBERON:0007806

Name:	connecting stalk
Definition:	"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/]
Xrefs:	links: BTO:0004705 ncithesaurus:Connecting_Stalk
Comments:	todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:	UBERON:0005728(extraembryonic mesoderm)

Children

develops from:	UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description
5.79e-79	FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708	p@chr7:135931480..135931486, +
5.79e-79	FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708	p@chr7:135931480..135931486, +
5.79e-79	FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708	p@chr10:120921270..120921282, -
5.79e-79	FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708	p@chr10:120921270..120921282, -
2.16e-63	FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42	p8@RAB7L1
2.16e-63	FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42	p8@RAB7L1
1.1e-59	FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:33024873..33024877, -
1.1e-59	FFCP PHASE2:Hg19::chr19:10983266..10983276,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:10983266..10983276, -
1.1e-59	FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr8:59970765..59970787, -
1.1e-59	FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:106397597..106397610, +
1.1e-59	FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:31150998..31151005, -
1.1e-59	FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:53245239..53245255, -
1.1e-59	FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:85688154..85688161, -
1.1e-59	FFCP PHASE1:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr12:130530197..130530209, -
1.1e-59	FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:135486487..135486491, +
1.1e-59	FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:180050773..180050786, +
1.1e-59	FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr5:146717844..146717861, +
1.1e-59	FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr21:18170731..18170736, -
1.1e-59	FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:169775687..169775690, -
1.1e-59	FFCP PHASE1:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:167944606..167944610, -
1.1e-59	FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:138023154..138023161, -
1.1e-59	FFCP PHASE2:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr5:162742836..162742845, -
1.1e-59	FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:111331533..111331540, -
1.1e-59	FFCP PHASE2:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:182684840..182684848, +
1.1e-59	FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p17@MFF
1.1e-59	FFCP PHASE1:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:135738522..135738525, -
1.1e-59	FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:137816618..137816627, -
1.1e-59	FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr15:43323772..43323785, -
1.1e-59	FFCP PHASE2:Hg19::chr13:102271725..102271736,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr13:102271725..102271736, +
1.1e-59	FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr9:75001932..75001956, -
1.1e-59	FFCP PHASE2:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:484679..484683, +
1.1e-59	FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:40074306..40074328, +
1.1e-59	FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p42@IGFBP3
1.1e-59	FFCP PHASE1:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:85688154..85688161, -
1.1e-59	FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:106363901..106363915, -
1.1e-59	FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:65209811..65209818, +
1.1e-59	FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:148293218..148293252, +
1.1e-59	FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr1:177159780..177159790, -
1.1e-59	FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr14:76957827..76957835, +
1.1e-59	FFCP PHASE1:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:138023154..138023161, -
1.1e-59	FFCP PHASE1:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr5:162742836..162742845, -
1.1e-59	FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:119281371..119281382, -
1.1e-59	FFCP PHASE1:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:182684840..182684848, +
1.1e-59	FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p6@VDAC3
1.1e-59	FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:119279086..119279095, +
1.1e-59	FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:87324200..87324219, +
1.1e-59	FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:45926344..45926350, -
1.1e-59	FFCP PHASE2:Hg19::chr1:234765107..234765117,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p7@LINC00184
1.1e-59	FFCP PHASE1:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr14:76957754..76957760, +
1.1e-59	FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:53511749..53511757, -
1.1e-59	FFCP PHASE1:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:137816618..137816627, -
1.1e-59	FFCP PHASE1:Hg19::chr21:18180062..18180079,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr21:18180062..18180079, -
1.1e-59	FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:135705379..135705388, +
1.1e-59	FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr21:18179795..18179798, -
1.1e-59	FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p10@SFXN4
1.1e-59	FFCP PHASE1:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:484679..484683, +
1.1e-59	FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr9:74995293..74995311, -
1.1e-59	FFCP PHASE1:Hg19::chr6:87324188..87324195,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:87324188..87324195, +
1.1e-59	FFCP PHASE2:Hg19::chr10:120924761..120924770,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p10@SFXN4
1.1e-59	FFCP PHASE1:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p18@MFF
1.1e-59	FFCP PHASE1:Hg19::chr3:45926316..45926329,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr3:45926316..45926329, -
1.1e-59	FFCP PHASE1:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr22:37484379..37484392, +
1.1e-59	FFCP PHASE1:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p42@IGFBP3
1.1e-59	FFCP PHASE1:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr20:22771722..22771733, +
1.1e-59	FFCP PHASE1:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:106363901..106363915, -
1.1e-59	FFCP PHASE1:Hg19::chr2:11264766..11264775,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:11264766..11264775, -
1.1e-59	FFCP PHASE1:Hg19::chr19:49488905..49488920,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:49488905..49488920, -
1.1e-59	FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:6191002..6191007, -
1.1e-59	FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:138023015..138023024, -
1.1e-59	FFCP PHASE1:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p10@APOD
1.1e-59	FFCP PHASE2:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr8:56625901..56625913, +
1.1e-59	FFCP PHASE2:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p10@MFF
1.1e-59	FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:42682242..42682253, -
1.1e-59	FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr17:64034078..64034124, -
1.1e-59	FFCP PHASE1:Hg19::chr16:86326031..86326033,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr16:86326031..86326033, +
1.1e-59	FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:106397632..106397643, +
1.1e-59	FFCP PHASE1:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr7:135705379..135705388, +
1.1e-59	FFCP PHASE1:Hg19::chr15:43323789..43323811,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr15:43323789..43323811, -
1.1e-59	FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:7599792..7599797, +
1.1e-59	FFCP PHASE2:Hg19::chr13:101999642..101999655,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr13:101999642..101999655, -
1.1e-59	FFCP PHASE1:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr9:74995293..74995311, -
1.1e-59	FFCP PHASE1:Hg19::chr21:43934923..43934932,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr21:43934923..43934932, +
1.1e-59	FFCP PHASE2:Hg19::chr7:142250929..142250940,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p3@AF430683, p3@AF430684, p3@AF430685
1.1e-59	FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:167951727..167951732, -
1.1e-59	FFCP PHASE2:Hg19::chr21:43934831..43934840,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr21:43934831..43934840, +
1.1e-59	FFCP PHASE2:Hg19::chr12:130530117..130530125,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr12:130530117..130530125, -
1.1e-59	FFCP PHASE1:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr8:56618992..56618998, +
1.1e-59	FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr20:22771662..22771675, +
1.1e-59	FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr19:31524425..31524444, -
1.1e-59	FFCP PHASE1:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:6191002..6191007, -
1.1e-59	FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr20:39574012..39574015, +
1.1e-59	FFCP PHASE1:Hg19::chr2:148284480..148284484,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:148284480..148284484, +
1.1e-59	FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr8:12548586..12548602, -
1.1e-59	FFCP PHASE2:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr2:148279057..148279078, +
1.1e-59	FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr1:172807491..172807499, -
1.1e-59	FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr14:76957754..76957760, +
1.1e-59	FFCP PHASE1:Hg19::chr11:117957610..117957619,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p3@LOC100526771
1.1e-59	FFCP PHASE1:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr6:138023015..138023024, -
1.1e-59	FFCP PHASE2:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr11:90524493..90524505, +
1.1e-59	FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0f	p@chr4:167748986..167748989, -