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CL:0002420

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Name:immature T cell
Namespace:FANTOM
Definition:"A T cell that has not completed T cell selection." [GOC:tfm]
Xrefs:
links:
BTO:0001372
Synonyms: "immature T-cell" EXACT []
Created by:tmeehan
Creation date:2010-10-12T01:56:17Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000084(T cell)



Children


is a:CL:0000790 (immature alpha-beta T cell),CL:0000893 (thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002420 (immature T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_86c7739e0e0d1308afb9b44792e720a6p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_86c7739e0e0d1308afb9b44792e720a6p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_b5389a703d321d4a01f97c9f74728b16p@chr15:89179440..89179457, -
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_b5389a703d321d4a01f97c9f74728b16p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_628492ee5af22a3ca0d1122477960200p@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_628492ee5af22a3ca0d1122477960200p@chr5:35854487..35854499, -
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_e11bf6d749b47aad49d8924f2897f996p@chr5:35854779..35854826, +
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_e11bf6d749b47aad49d8924f2897f996p@chr5:35854779..35854826, +
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_d9bf622f29f747089e7b68c6f8a0180cp@chr4:103551892..103551903, -
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_d9bf622f29f747089e7b68c6f8a0180cp@chr4:103551892..103551903, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_27b74456ccce50f3f3df5a2c9b7c6fcbp@chr5:35856882..35856909, -
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_27b74456ccce50f3f3df5a2c9b7c6fcbp@chr5:35856882..35856909, -
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_fe85f502599023125c8268ea795af993p1@GTSCR1
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_fe85f502599023125c8268ea795af993p1@GTSCR1
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_5df141587f3b74b025b7ffb3672a98f3p@chr7:97880779..97880793, +
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_5df141587f3b74b025b7ffb3672a98f3p@chr7:97880779..97880793, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_38b14d39c8767777e9c3622d8ab14379p@chr1:25255894..25255906, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_38b14d39c8767777e9c3622d8ab14379p@chr1:25255894..25255906, +
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_2da0a96cbc76da71eafcd7c2beb55dc0p10@HNRPLL
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_2da0a96cbc76da71eafcd7c2beb55dc0p10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_1e603a48b456ee48f430c23dd85a9b14p1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1e603a48b456ee48f430c23dd85a9b14p3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1e603a48b456ee48f430c23dd85a9b14p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_1e603a48b456ee48f430c23dd85a9b14p1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_1e603a48b456ee48f430c23dd85a9b14p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_1e603a48b456ee48f430c23dd85a9b14p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_1e603a48b456ee48f430c23dd85a9b14p1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_1e603a48b456ee48f430c23dd85a9b14p@chr11:99015330..99015341, -
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_1e603a48b456ee48f430c23dd85a9b14p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1e603a48b456ee48f430c23dd85a9b14p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_1e603a48b456ee48f430c23dd85a9b14p@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_1e603a48b456ee48f430c23dd85a9b14p1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_1e603a48b456ee48f430c23dd85a9b14p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1e603a48b456ee48f430c23dd85a9b14p3@Tnfrsf25
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_cbfa38c68c97ead487e9ac65be9254c4p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_cbfa38c68c97ead487e9ac65be9254c4p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_52700b995f3d633b05d4e00cb2f851a4p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_52700b995f3d633b05d4e00cb2f851a4p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_c44f4cab83432b04fe7e24a19de5cd8dp@chr16:57162957..57162973, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_c44f4cab83432b04fe7e24a19de5cd8dp@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_2fb7b941b5f4e826fdf331e625650fd3p@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_2fb7b941b5f4e826fdf331e625650fd3p@chr2:87053288..87053295, -
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_933ca346634c14810f5fae5a1dbdea46p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_933ca346634c14810f5fae5a1dbdea46p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_933ca346634c14810f5fae5a1dbdea46p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_933ca346634c14810f5fae5a1dbdea46p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_daaeb46002ddd0cf0fbf009e2d4984fep@chr5:35780579..35780585, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_daaeb46002ddd0cf0fbf009e2d4984fep@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_d238547be7d5c52108a9ddcf26f3f331p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_d238547be7d5c52108a9ddcf26f3f331p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_ef7860daab50782ec7a517b52025040bp@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_ef7860daab50782ec7a517b52025040bp@chr12:49375076..49375089, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_59371d91c9ba3fc625c640025969bd13p@chr10:9060907..9060927, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_59371d91c9ba3fc625c640025969bd13p@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_943dc6c1ea02a13dc16ded725dd570fbp@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_943dc6c1ea02a13dc16ded725dd570fbp@chr12:10561626..10561641, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_e22f3a53b04e3ce5a6df0758e754c0c3p@chr7:150178764..150178778, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_e22f3a53b04e3ce5a6df0758e754c0c3p@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_1196385a54980b3d62838932ae7f95bbp@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_1196385a54980b3d62838932ae7f95bbp@chr2:182038499..182038509, +
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_c217e9265ebb7657c6e54638f6d85e87p@chr4:4271366..4271377, -
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_c217e9265ebb7657c6e54638f6d85e87p@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_ad520f866cfb5079790530b461dcbf58p10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_ad520f866cfb5079790530b461dcbf58p10@ATM
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_9bde90dd3f81bfd76454a69544585cc6p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_9bde90dd3f81bfd76454a69544585cc6p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_00b31ff06a7b2f38ce34e919fd2140cap@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_00b31ff06a7b2f38ce34e919fd2140cap@chr5:67571114..67571129, -
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_4f2965e45e7e117fde29b94b0f5a579dp1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_4f2965e45e7e117fde29b94b0f5a579dp1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_4f2965e45e7e117fde29b94b0f5a579dp@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_4f2965e45e7e117fde29b94b0f5a579dp@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_4f2965e45e7e117fde29b94b0f5a579dp@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_4f2965e45e7e117fde29b94b0f5a579dp@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr8:84082784..84082795, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr12:74704873..74704900, +
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_4f2965e45e7e117fde29b94b0f5a579dp@chr8:84082784..84082795, +
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_128d02de6f6f56981b127683bc89fa03p@chr6:143228788..143228799, -
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_128d02de6f6f56981b127683bc89fa03p@chr6:143228788..143228799, -
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_b14560948d25e49e138329a640be730ap@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_b14560948d25e49e138329a640be730ap@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_b14560948d25e49e138329a640be730ap@chr14:54838649..54838660, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_b14560948d25e49e138329a640be730ap@chr14:54838649..54838660, +
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_b14560948d25e49e138329a640be730ap@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_b14560948d25e49e138329a640be730ap@chr5:123440767..123440778, +
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_363bae5947ce1226ad30a6a270a7cfcfp@chr15:27786221..27786240, -
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_363bae5947ce1226ad30a6a270a7cfcfp@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_fe819b909d8350b06c7e19eac63b40b1p@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_fe819b909d8350b06c7e19eac63b40b1p@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_fe819b909d8350b06c7e19eac63b40b1p@chr6:99215016..99215036, +
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_fe819b909d8350b06c7e19eac63b40b1p@chr3:103672068..103672090, -
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_be093a4746fb2e31a8441662d5aca489p@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_be093a4746fb2e31a8441662d5aca489p@chr6:48634453..48634468, -
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_2cb52a11ce1e9556e30ebf24e78f9969p@chr7:36816941..36816949, +
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_2cb52a11ce1e9556e30ebf24e78f9969p@chr7:36816941..36816949, +
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_591a471a9e3591ecbb2934e88dbdda5ap5@uc007vxz.1
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_591a471a9e3591ecbb2934e88dbdda5ap5@uc007vxz.1

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