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MCL coexpression mm9:107

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:128241409..128241430,-p5@Tmem198b
Mm9::chr10:38684998..38685007,+p9@Lama4
Mm9::chr10:8482017..8482057,-p@chr10:8482017..8482057
-
Mm9::chr10:8482067..8482081,-p@chr10:8482067..8482081
-
Mm9::chr10:85484738..85484760,+p5@Fbxo7
Mm9::chr10:85484763..85484772,+p8@Fbxo7
Mm9::chr10:85495802..85495813,+p11@Fbxo7
Mm9::chr11:113795301..113795315,+p@chr11:113795301..113795315
+
Mm9::chr11:113927488..113927502,-p2@Sdk2
Mm9::chr11:35357986..35357997,+p6@Slit3
Mm9::chr11:35358006..35358022,+p5@Slit3
Mm9::chr11:5872449..5872475,-p@chr11:5872449..5872475
-
Mm9::chr11:5872687..5872711,-p@chr11:5872687..5872711
-
Mm9::chr12:88020400..88020411,+p@chr12:88020400..88020411
+
Mm9::chr13:115629493..115629504,+p@chr13:115629493..115629504
+
Mm9::chr13:26078079..26078090,-p@chr13:26078079..26078090
-
Mm9::chr14:104243452..104243455,-p15@Ednrb
Mm9::chr15:78986963..78986976,-p@chr15:78986963..78986976
-
Mm9::chr15:78994288..78994299,-p@chr15:78994288..78994299
-
Mm9::chr15:78994907..78994926,-p1@Sox10
Mm9::chr15:90848413..90848436,-p@chr15:90848413..90848436
-
Mm9::chr16:35853680..35853695,-p@chr16:35853680..35853695
-
Mm9::chr17:64660640..64660669,-p@chr17:64660640..64660669
-
Mm9::chr17:72942954..72942965,-p@chr17:72942954..72942965
-
Mm9::chr17:72953973..72953985,-p1@Alk
Mm9::chr18:32109348..32109364,-p4@Gpr17
Mm9::chr18:32109368..32109396,-p2@Gpr17
Mm9::chr18:32109449..32109468,-p3@Gpr17
Mm9::chr18:32109476..32109489,-p5@Gpr17
Mm9::chr18:32109524..32109538,-p6@Gpr17
Mm9::chr18:43367276..43367332,+p1@LOC100047004
p1@Stk32a
Mm9::chr18:43367333..43367354,+p2@LOC100047004
p2@Stk32a
Mm9::chr18:69752864..69752875,+p25@Tcf4
Mm9::chr18:69752912..69752928,+p9@Tcf4
Mm9::chr19:10347420..10347423,-p@chr19:10347420..10347423
-
Mm9::chr19:10379344..10379355,-p2@Dagla
Mm9::chr19:40457062..40457090,-p@chr19:40457062..40457090
-
Mm9::chr19:40457288..40457305,-p3@Sorbs1
Mm9::chr19:40457348..40457363,-p2@Sorbs1
Mm9::chr19:47538896..47538940,-p3@Sh3pxd2a
Mm9::chr19:57082677..57082713,-p1@Afap1l2
Mm9::chr1:112818931..112818935,-p@chr1:112818931..112818935
-
Mm9::chr1:112856387..112856393,-p@chr1:112856387..112856393
-
Mm9::chr1:138130615..138130628,-p@chr1:138130615..138130628
-
Mm9::chr1:138130630..138130657,-p2@5730559C18Rik
Mm9::chr1:138130690..138130711,-p4@5730559C18Rik
Mm9::chr1:168931103..168931148,+p2@Fam78b
Mm9::chr1:65358027..65358031,+p1@Pth2r
Mm9::chr1:94648758..94648763,+p@chr1:94648758..94648763
+
Mm9::chr2:125549260..125549273,-p4@Shc4
Mm9::chr2:125549393..125549427,-p1@Shc4
Mm9::chr2:125549443..125549459,-p6@Shc4
Mm9::chr2:18238569..18238603,-p@chr2:18238569..18238603
-
Mm9::chr2:58420009..58420022,-p6@Acvr1
Mm9::chr2:83564233..83564263,+p2@Itgav
Mm9::chr3:34095664..34095678,+p1@ENSMUST00000172560
Mm9::chr3:34095699..34095712,+p2@ENSMUST00000172560
Mm9::chr3:34095844..34095855,+p1@ENSMUST00000174785
Mm9::chr3:34101597..34101601,+p@chr3:34101597..34101601
+
Mm9::chr3:97841362..97841366,+p@chr3:97841362..97841366
+
Mm9::chr4:129727954..129727978,+p@chr4:129727954..129727978
+
Mm9::chr4:129727985..129727993,+p@chr4:129727985..129727993
+
Mm9::chr4:129732334..129732345,+p8@Col16a1
Mm9::chr4:129733417..129733462,+p@chr4:129733417..129733462
+
Mm9::chr4:144482577..144482586,+p16@Dhrs3
Mm9::chr4:144590339..144590345,+p@chr4:144590339..144590345
+
Mm9::chr4:98789176..98789188,-p@chr4:98789176..98789188
-
Mm9::chr4:99321776..99321807,-p1@ENSMUST00000136525
Mm9::chr4:99322678..99322679,-p@chr4:99322678..99322679
-
Mm9::chr4:99322689..99322723,-p@chr4:99322689..99322723
-
Mm9::chr4:99322726..99322731,-p@chr4:99322726..99322731
-
Mm9::chr4:99322820..99322845,+p1@Foxd3
Mm9::chr4:99322855..99322867,+p2@Foxd3
Mm9::chr4:99323046..99323073,+p3@Foxd3
Mm9::chr5:151992717..151992728,-p6@Stard13
Mm9::chr5:151992729..151992794,-p1@Stard13
Mm9::chr5:152036343..152036366,-p4@Stard13
Mm9::chr5:152036393..152036426,-p2@Stard13
Mm9::chr5:152036622..152036641,-p3@Stard13
Mm9::chr5:67490447..67490458,-p7@Phox2b
Mm9::chr5:67490474..67490494,-p2@Phox2b
Mm9::chr6:103524593..103524596,+p@chr6:103524593..103524596
+
Mm9::chr6:126711807..126711820,+p@chr6:126711807..126711820
+
Mm9::chr7:121889040..121889050,+p10@Insc
Mm9::chr7:121889188..121889197,+p9@Insc
Mm9::chr7:121889199..121889232,+p1@Insc
Mm9::chr7:121889421..121889445,+p2@Insc
Mm9::chr7:121889453..121889464,+p7@Insc
Mm9::chr7:121897212..121897227,+p12@Insc
Mm9::chr7:26033443..26033484,-p@chr7:26033443..26033484
-
Mm9::chr7:31838093..31838109,-p6@Fxyd1
Mm9::chr7:31838142..31838171,-p4@Fxyd1
Mm9::chr7:31844379..31844401,+p6@Lgi4
Mm9::chr7:31844407..31844429,+p2@Lgi4
Mm9::chr7:31844442..31844458,+p4@Lgi4
Mm9::chr7:31844566..31844654,+p1@Lgi4
Mm9::chr7:31844661..31844676,+p8@Lgi4
Mm9::chr7:31844692..31844718,+p5@Lgi4
Mm9::chr7:31845082..31845100,+p10@Lgi4
Mm9::chr7:38151719..38151721,-p@chr7:38151719..38151721
-
Mm9::chr7:38348671..38348675,-p@chr7:38348671..38348675
-
Mm9::chr7:38554436..38554440,-p@chr7:38554436..38554440
-
Mm9::chr7:38554684..38554696,-p10@Zfp536
Mm9::chr7:38555776..38555815,-p@chr7:38555776..38555815
-
Mm9::chr7:38557861..38557890,+p@chr7:38557861..38557890
+
Mm9::chr7:38557887..38557910,-p5@Zfp536
Mm9::chr7:38559002..38559009,-p15@Zfp536
Mm9::chr7:38559019..38559026,-p21@Zfp536
Mm9::chr7:56531440..56531447,+p@chr7:56531440..56531447
+
Mm9::chr8:59810908..59810928,+p1@ENSMUST00000132988
Mm9::chr8:59811222..59811252,+p@chr8:59811222..59811252
+
Mm9::chr8:95350156..95350173,+p@chr8:95350156..95350173
+
Mm9::chr9:20777404..20777418,+p@chr9:20777404..20777418
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030318melanocyte differentiation0.0245230399177696
GO:0050931pigment cell differentiation0.0245230399177696
GO:0007275multicellular organismal development0.0245230399177696
GO:0001755neural crest cell migration0.0245230399177696
GO:0007422peripheral nervous system development0.0245230399177696
GO:0001701in utero embryonic development0.0245230399177696
GO:0048066pigmentation during development0.0245230399177696
GO:0014032neural crest cell development0.0245230399177696
GO:0014033neural crest cell differentiation0.0245230399177696
GO:0022610biological adhesion0.0245230399177696
GO:0007155cell adhesion0.0245230399177696
GO:0048731system development0.0245230399177696
GO:0014031mesenchymal cell development0.0245230399177696
GO:0048762mesenchymal cell differentiation0.0245230399177696
GO:0048869cellular developmental process0.0245230399177696
GO:0030154cell differentiation0.0245230399177696
GO:0001829trophectodermal cell differentiation0.0245230399177696
GO:0050431transforming growth factor beta binding0.0245230399177696
GO:0001600endothelin-B receptor activity0.0245230399177696
GO:0030971receptor tyrosine kinase binding0.0245230399177696
GO:0007497posterior midgut development0.0245230399177696
GO:0048646anatomical structure formation0.0343096837245323
GO:0005667transcription factor complex0.0343096837245323
GO:0032502developmental process0.0343096837245323
GO:0001568blood vessel development0.0343096837245323
GO:0001944vasculature development0.0343096837245323
GO:0016361activin receptor activity, type I0.0343096837245323
GO:0017002activin receptor activity0.0343096837245323
GO:0004962endothelin receptor activity0.0343096837245323
GO:0007494midgut development0.0343096837245323
GO:0048856anatomical structure development0.0345956572711971
GO:0009790embryonic development0.0345956572711971
GO:0005201extracellular matrix structural constituent0.0345956572711971
GO:0048468cell development0.0354617629518457
GO:0043009chordate embryonic development0.0355391392346548
GO:0009792embryonic development ending in birth or egg hatching0.0358877002660932
GO:0005025transforming growth factor beta receptor activity, type I0.039562073686022
GO:0048484enteric nervous system development0.039562073686022
GO:0043149stress fiber formation0.039562073686022
GO:0019199transmembrane receptor protein kinase activity0.0419181546907758
GO:0048469cell maturation0.0419966051958706
GO:0044451nucleoplasm part0.0461431632330263
GO:0060037pharyngeal system development0.0463915369030656
GO:0043277apoptotic cell clearance0.0463915369030656
GO:0007167enzyme linked receptor protein signaling pathway0.0463915369030656
GO:0051179localization0.0476151749188097
GO:0016477cell migration0.0476151749188097
GO:0005654nucleoplasm0.0476151749188097
GO:0048041focal adhesion formation0.0494938416044267
GO:0005606laminin-1 complex0.0494938416044267
GO:0001825blastocyst formation0.0494938416044267
GO:0021700developmental maturation0.0494938416044267
GO:0044420extracellular matrix part0.0495976462553279



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
autonomic neuron2.40e-129
ectodermal cell1.00e-0944
neurectodermal cell1.00e-0944
neural cell5.73e-0943
neuron1.46e-0833
neuronal stem cell1.46e-0833
neuroblast1.46e-0833
electrically signaling cell1.46e-0833
non-terminally differentiated cell4.95e-0749

Uber Anatomy
Ontology termp-valuen
peripheral nervous system1.41e-1411
autonomic nervous system2.40e-129
ectoderm-derived structure1.21e-0795
ectoderm1.21e-0795
presumptive ectoderm1.21e-0795
spinal cord2.81e-076
dorsal region element2.81e-076
dorsum2.81e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.191823
MA0004.10.490665
MA0006.10.695262
MA0007.10.0157294
MA0009.10.0600887
MA0014.10.0147495
MA0017.10.181021
MA0019.10.390578
MA0024.10.0467784
MA0025.10.163445
MA0027.11.37619
MA0028.10.0230633
MA0029.10.158912
MA0030.10.0426272
MA0031.10.31921
MA0038.10.359275
MA0040.10.229434
MA0041.10.00564643
MA0042.10.0355288
MA0043.10.0964893
MA0046.10.0724935
MA0048.10.437631
MA0050.10.0322685
MA0051.10.00631989
MA0052.10.0670299
MA0055.10.339344
MA0056.10
MA0057.10.866563
MA0058.11.01758
MA0059.11.65205
MA0060.10.000671582
MA0061.11.20757
MA0063.10
MA0066.11.07516
MA0067.11.88798
MA0068.11.78148
MA0069.10.51154
MA0070.10.228157
MA0071.10.439512
MA0072.10.219896
MA0073.160.8974
MA0074.11.53442
MA0076.10.00204644
MA0077.10.440782
MA0078.10.265109
MA0081.10.295271
MA0083.10.0961524
MA0084.10.472187
MA0087.10.270782
MA0088.10.70699
MA0089.10
MA0090.10.73393
MA0091.12.29931
MA0092.10.538864
MA0093.10.489521
MA0095.10
MA0098.10
MA0100.10.240996
MA0101.10.723512
MA0103.10.0745276
MA0105.10.853419
MA0106.11.04005
MA0107.10.724763
MA0108.20.229553
MA0109.10
MA0111.11.63039
MA0113.10.23258
MA0114.10.0254717
MA0115.10.0976832
MA0116.10.534872
MA0117.10.286352
MA0119.14.91446
MA0122.11.57444
MA0124.10.196795
MA0125.10.154608
MA0130.10
MA0131.10.0762405
MA0132.10
MA0133.10
MA0135.10.362227
MA0136.10.0734971
MA0139.10.59842
MA0140.10.126803
MA0141.10.0526317
MA0142.10.547598
MA0143.10.448198
MA0144.10.138267
MA0145.10.132856
MA0146.11.1742
MA0147.10.345465
MA0148.10.0243083
MA0149.10.0963321
MA0062.25.39898e-06
MA0035.20.411568
MA0039.22.42116
MA0138.21.67099
MA0002.20.0390114
MA0137.20.162105
MA0104.20.479665
MA0047.20.0311077
MA0112.21.27485
MA0065.20.177925
MA0150.10.0948216
MA0151.10
MA0152.10.199749
MA0153.10.382558
MA0154.11.34137
MA0155.13.65977
MA0156.10.00200488
MA0157.10.476002
MA0158.10
MA0159.13.97282
MA0160.10.240739
MA0161.10
MA0162.10.0970558
MA0163.11.48832
MA0164.11.31656
MA0080.20.0347275
MA0018.20.758668
MA0099.20.354131
MA0079.24.30697
MA0102.20.515703
MA0258.10.690547
MA0259.10.298593
MA0442.10
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