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MCL coexpression mm9:140

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:116725466..116725476,-p@chr10:116725466..116725476
-
Mm9::chr10:127798349..127798397,+p@chr10:127798349..127798397
+
Mm9::chr10:80857831..80857846,+p@chr10:80857831..80857846
+
Mm9::chr10:80858998..80859002,+p@chr10:80858998..80859002
+
Mm9::chr10:80993203..80993223,-p@chr10:80993203..80993223
-
Mm9::chr10:80993268..80993292,-p@chr10:80993268..80993292
-
Mm9::chr10:90584691..90584739,-p2@LOC100046151
p2@Slc25a3
Mm9::chr11:105850561..105850570,+p@chr11:105850561..105850570
+
Mm9::chr11:115744245..115744271,+p@chr11:115744245..115744271
+
Mm9::chr11:120915739..120915758,-p@chr11:120915739..120915758
-
Mm9::chr11:120916189..120916224,-p@chr11:120916189..120916224
-
Mm9::chr11:120916370..120916381,-p@chr11:120916370..120916381
-
Mm9::chr11:21465891..21465910,-p@chr11:21465891..21465910
-
Mm9::chr11:6122242..6122286,-p@chr11:6122242..6122286
-
Mm9::chr11:6128416..6128452,-p@chr11:6128416..6128452
-
Mm9::chr11:6129086..6129105,-p@chr11:6129086..6129105
-
Mm9::chr11:6246536..6246561,+p@chr11:6246536..6246561
+
Mm9::chr11:62972318..62972333,+p@chr11:62972318..62972333
+
Mm9::chr11:78776623..78776640,-p@chr11:78776623..78776640
-
Mm9::chr13:54819921..54819933,+p@chr13:54819921..54819933
+
Mm9::chr13:74891788..74891815,-p@chr13:74891788..74891815
-
Mm9::chr15:74709813..74709823,-p@chr15:74709813..74709823
-
Mm9::chr15:75697561..75697570,+p@chr15:75697561..75697570
+
Mm9::chr15:78681407..78681425,-p@chr15:78681407..78681425
-
Mm9::chr15:85062984..85063010,+p@chr15:85062984..85063010
+
Mm9::chr15:85068930..85068959,+p@chr15:85068930..85068959
+
Mm9::chr15:99554264..99554288,+p@chr15:99554264..99554288
+
Mm9::chr16:32471582..32471616,+p@chr16:32471582..32471616
+
Mm9::chr16:32486254..32486261,-p@chr16:32486254..32486261
-
Mm9::chr16:33799053..33799075,+p@chr16:33799053..33799075
+
Mm9::chr16:33818973..33818985,+p@chr16:33818973..33818985
+
Mm9::chr16:56691112..56691125,-p@chr16:56691112..56691125
-
Mm9::chr16:58733883..58733901,+p@chr16:58733883..58733901
+
Mm9::chr17:35482607..35482613,+p@chr17:35482607..35482613
+
Mm9::chr17:37035160..37035171,+p4@Trim31
Mm9::chr17:6959067..6959093,-p@chr17:6959067..6959093
-
Mm9::chr19:40639532..40639548,-p@chr19:40639532..40639548
-
Mm9::chr19:6108680..6108697,+p@chr19:6108680..6108697
+
Mm9::chr1:130215675..130215691,-p@chr1:130215675..130215691
-
Mm9::chr1:130224326..130224332,-p@chr1:130224326..130224332
-
Mm9::chr1:132730972..132730993,+p@chr1:132730972..132730993
+
Mm9::chr1:168095965..168095974,+p@chr1:168095965..168095974
+
Mm9::chr1:173461262..173461279,-p@chr1:173461262..173461279
-
Mm9::chr1:174422311..174422323,+p@chr1:174422311..174422323
+
Mm9::chr1:74478918..74478947,+p@chr1:74478918..74478947
+
Mm9::chr2:121185294..121185305,+p@chr2:121185294..121185305
+
Mm9::chr2:127531221..127531251,-p@chr2:127531221..127531251
-
Mm9::chr2:127531403..127531417,-p@chr2:127531403..127531417
-
Mm9::chr2:70967832..70967858,+p@chr2:70967832..70967858
+
Mm9::chr3:107687704..107687729,+p@chr3:107687704..107687729
+
Mm9::chr3:122996601..122996627,+p@chr3:122996601..122996627
+
Mm9::chr3:137754095..137754119,-p@chr3:137754095..137754119
-
Mm9::chr3:3657068..3657079,+p@chr3:3657068..3657079
+
Mm9::chr3:63135586..63135592,+p@chr3:63135586..63135592
+
Mm9::chr3:72746125..72746128,-p@chr3:72746125..72746128
-
Mm9::chr3:72766054..72766059,-p@chr3:72766054..72766059
-
Mm9::chr4:11737430..11737452,+p@chr4:11737430..11737452
+
Mm9::chr4:117904384..117904399,-p@chr4:117904384..117904399
-
Mm9::chr4:46551261..46551280,-p@chr4:46551261..46551280
-
Mm9::chr5:102243505..102243543,+p@chr5:102243505..102243543
+
Mm9::chr5:136259235..136259279,+p@chr5:136259235..136259279
+
Mm9::chr5:31236245..31236255,-p@chr5:31236245..31236255
-
Mm9::chr5:33454755..33454762,+p@chr5:33454755..33454762
+
Mm9::chr6:29820558..29820602,+p10@Ahcyl2
Mm9::chr6:40606408..40606419,+p@chr6:40606408..40606419
+
Mm9::chr6:48856081..48856092,+p@chr6:48856081..48856092
+
Mm9::chr6:48856094..48856111,+p@chr6:48856094..48856111
+
Mm9::chr6:86600154..86600167,-p@chr6:86600154..86600167
-
Mm9::chr7:148455350..148455374,-p@chr7:148455350..148455374
-
Mm9::chr7:148458990..148459016,-p@chr7:148458990..148459016
-
Mm9::chr7:148542014..148542028,+p@chr7:148542014..148542028
+
Mm9::chr7:148542041..148542053,+p@chr7:148542041..148542053
+
Mm9::chr7:28871365..28871380,+p@chr7:28871365..28871380
+
Mm9::chr7:28878599..28878625,+p@chr7:28878599..28878625
+
Mm9::chr7:29679364..29679380,-p@chr7:29679364..29679380
-
Mm9::chr7:30032141..30032157,-p@chr7:30032141..30032157
-
Mm9::chr7:91300283..91300297,-p@chr7:91300283..91300297
-
Mm9::chr8:109187783..109187801,+p@chr8:109187783..109187801
+
Mm9::chr8:46392160..46392176,-p@chr8:46392160..46392176
-
Mm9::chr9:46050751..46050794,+p@chr9:46050751..46050794
+
Mm9::chr9:7502340..7502345,+p1@Mmp10
Mm9::chr9:98405173..98405185,+p@chr9:98405173..98405185
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009057macromolecule catabolic process0.0247987635291779
GO:0006096glycolysis0.0247987635291779
GO:0015898amiloride transport0.0247987635291779
GO:0016024CDP-diacylglycerol biosynthetic process0.0247987635291779
GO:0050164oxoglutarate dehydrogenase (NADP+) activity0.0247987635291779
GO:0030303stromelysin 2 activity0.0247987635291779
GO:0030161calpain inhibitor activity0.0247987635291779
GO:0046341CDP-diacylglycerol metabolic process0.0247987635291779
GO:0006007glucose catabolic process0.0247987635291779
GO:0046365monosaccharide catabolic process0.0247987635291779
GO:0019320hexose catabolic process0.0247987635291779
GO:0009056catabolic process0.0247987635291779
GO:0046164alcohol catabolic process0.0247987635291779
GO:0008654phospholipid biosynthetic process0.0247987635291779
GO:0044275cellular carbohydrate catabolic process0.0247987635291779
GO:0004605phosphatidate cytidylyltransferase activity0.0247987635291779
GO:0045634regulation of melanocyte differentiation0.0247987635291779
GO:0042587glycogen granule0.0247987635291779
GO:0004105choline-phosphate cytidylyltransferase activity0.0247987635291779
GO:0050932regulation of pigment cell differentiation0.0247987635291779
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity0.0247987635291779
GO:0016052carbohydrate catabolic process0.0247987635291779
GO:0046467membrane lipid biosynthetic process0.0247987635291779
GO:0048038quinone binding0.0304929991876725
GO:0030060L-malate dehydrogenase activity0.0304929991876725
GO:0030976thiamin pyrophosphate binding0.0304929991876725
GO:0006006glucose metabolic process0.0364354278864612
GO:0060158dopamine receptor, phospholipase C activating pathway0.0364354278864612
GO:0006651diacylglycerol biosynthetic process0.0364354278864612
GO:0016779nucleotidyltransferase activity0.0406319751788347
GO:0006108malate metabolic process0.0412564231525579
GO:0008131amine oxidase activity0.0412564231525579
GO:0006644phospholipid metabolic process0.044031454269364
GO:0006656phosphatidylcholine biosynthetic process0.0465750754568059
GO:0019318hexose metabolic process0.0485965440168064
GO:0046460neutral lipid biosynthetic process0.0485965440168064
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor0.0485965440168064
GO:0046463acylglycerol biosynthetic process0.0485965440168064
GO:0005996monosaccharide metabolic process0.0490593965590794
GO:0016615malate dehydrogenase activity0.0490593965590794
GO:0046504glycerol ether biosynthetic process0.0490593965590794
GO:0045017glycerolipid biosynthetic process0.0490593965590794
GO:0046339diacylglycerol metabolic process0.0490593965590794



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine3.94e-3431
gastrointestinal system9.20e-2647
small intestine6.95e-124
mucosa7.68e-1115
digestive system1.30e-10116
digestive tract1.30e-10116
primitive gut1.30e-10116
endoderm-derived structure2.42e-10118
endoderm2.42e-10118
presumptive endoderm2.42e-10118
ileal mucosa5.76e-093
ileum5.76e-093
mucosa of small intestine5.76e-093
wall of small intestine5.76e-093
subdivision of digestive tract9.84e-09114
organ component layer5.08e-0824
intestinal mucosa3.03e-0713
anatomical wall3.03e-0713
wall of intestine3.03e-0713
gastrointestinal system mucosa3.03e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.17372e-05
MA0004.10.296972
MA0006.10.0499996
MA0007.10.265728
MA0009.10.359407
MA0014.13.74591e-07
MA0017.10.236277
MA0019.10.37895
MA0024.10.0920262
MA0025.10.244961
MA0027.11.51291
MA0028.10.00189543
MA0029.10.997632
MA0030.10.289997
MA0031.10.913551
MA0038.10.413228
MA0040.10.374926
MA0041.11.42899
MA0042.11.99889
MA0043.10.161239
MA0046.10.404647
MA0048.10.0351961
MA0050.10.101962
MA0051.10.0905748
MA0052.10.771533
MA0055.10.0294187
MA0056.10
MA0057.10.482514
MA0058.10.228928
MA0059.10.815894
MA0060.10.000931588
MA0061.10.64694
MA0063.10
MA0066.11.74306
MA0067.10.322796
MA0068.10.00719694
MA0069.10.121552
MA0070.10.373305
MA0071.10.871188
MA0072.10.112838
MA0073.11.31306e-10
MA0074.10.159457
MA0076.10.0427196
MA0077.10.336441
MA0078.10.506084
MA0081.10.482062
MA0083.10.160798
MA0084.10.588401
MA0087.10.426637
MA0088.10.0257177
MA0089.10
MA0090.10.380416
MA0091.10.764541
MA0092.10.381285
MA0093.10.338316
MA0095.10
MA0098.10
MA0100.10.0541302
MA0101.10.277006
MA0103.10.780229
MA0105.10.033274
MA0106.10.283232
MA0107.10.546579
MA0108.20.0500203
MA0109.10
MA0111.10.255499
MA0113.11.09009
MA0114.10.471839
MA0115.10.948692
MA0116.10.278848
MA0117.10.445764
MA0119.10.632557
MA0122.10.920101
MA0124.10.284537
MA0125.11.2308
MA0130.10
MA0131.10.0421582
MA0132.10
MA0133.10
MA0135.10.182111
MA0136.10.893665
MA0139.10.721554
MA0140.10.297698
MA0141.12.49926
MA0142.11.31566
MA0143.10.796481
MA0144.10.349752
MA0145.10.239876
MA0146.15.34541e-05
MA0147.10.0570375
MA0148.10.531146
MA0149.10.894133
MA0062.20.00919423
MA0035.20.151914
MA0039.22.09114e-12
MA0138.20.358448
MA0002.22.14961
MA0137.20.309354
MA0104.20.038555
MA0047.20.214117
MA0112.20.615882
MA0065.20.317098
MA0150.10.0619371
MA0151.10
MA0152.10.214254
MA0153.10.560749
MA0154.10.348547
MA0155.10.542178
MA0156.10.823501
MA0157.10.449889
MA0158.10
MA0159.10.609005
MA0160.10.790242
MA0161.10
MA0162.11.85149e-08
MA0163.10.0683621
MA0164.10.895081
MA0080.21.53491
MA0018.20.0752692
MA0099.20.62705
MA0079.21.19757e-11
MA0102.20.634426
MA0258.12.8978
MA0259.10.0474311
MA0442.10
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