MacroAPE 1083:PTF1A f1

Full Name: PTF1A_f1

Motif matrix

PO A C G T 1 2.0918367346938798 4.642857142857141 1.1734693877551 2.0918367346938798 2 4.3877551020408205 0.0 3.7755102040816304 1.83673469387755 3 1.83673469387755 1.02040816326531 7.1428571428571495 0.0 4 0.0 1.83673469387755 8.163265306122451 0.0 5 5.6122448979591795 0.0 4.3877551020408205 0.0 6 7.1428571428571495 1.02040816326531 1.83673469387755 0.0 7 8.979591836734691 0.0 0.0 1.02040816326531 8 2.6530612244898 3.6734693877551 1.7346938775510201 1.93877551020408 9 3.6734693877551 1.7346938775510201 0.918367346938776 3.6734693877551 10 0.918367346938776 3.57142857142857 4.48979591836735 1.02040816326531 11 4.59183673469388 2.7551020408163303 0.918367346938776 1.7346938775510201 12 6.3265306122449 1.93877551020408 1.7346938775510201 0.0 13 1.02040816326531 8.979591836734691 0.0 0.0 14 8.163265306122451 0.0 0.0 1.83673469387755 15 0.0 2.7551020408163303 5.510204081632651 1.7346938775510201 16 1.93877551020408 5.30612244897959 2.7551020408163303 0.0 17 1.83673469387755 0.0 0.0 8.163265306122451 18 0.0 0.0 10.0 0.0 19 1.7346938775510201 3.6734693877551 0.0 4.59183673469388 20 0.0 5.20408163265306 4.79591836734694 0.0 21 2.5255102040816304 5.280612244897959 0.688775510204082 1.5051020408163298

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

Target_ID	Optimal_offset	p-value	E-value	q-value	Overlap	Query consensus	Target consensus	Orientation
NHLH1#MA0048.1	-9	0.000212827	0.101306	0.138069	12	CAGGAAACAGAACAGCTGTCC	ACGCAGCTGCGC	-
twi#MA0249.1	-9	0.000291758	0.138877	0.138069	12	CAGGAAACAGAACAGCTGTCC	CAACATATGCGA	-
sna#MA0086.1	-12	0.00100867	0.480126	0.22944	6	CAGGAAACAGAACAGCTGTCC	CAGGTG	+
Myf#MA0055.1	-6	0.00292616	1.39285	0.395643	12	CAGGAAACAGAACAGCTGTCC	CAGCAGCTGCTG	+
TAL1::TCF3#MA0091.1	-8	0.00292616	1.39285	0.395643	12	CAGGAAACAGAACAGCTGTCC	CGACCATCTGTT	+
MGA1#MA0336.1	0	0.00410182	1.95246	0.445181	21	CAGGAAACAGAACAGCTGTCC	AGGACTATAGAACACTCTAAA	+
ZEB1#MA0103.1	-12	0.00423326	2.01503	0.445181	6	CAGGAAACAGAACAGCTGTCC	CAGGTG	-
Pax4#MA0068.1	-3	0.00691532	3.29169	0.540401	18	CAGGAAACAGAACAGCTGTCC	GAAAAATTTCCCATACTCCACTCCCCCCCC	+
Mycn#MA0104.1	-12	0.00793148	3.77538	0.540401	6	CAGGAAACAGAACAGCTGTCC	CACGTG	+
HMG-I/Y#MA0045.1	0	0.00843787	4.01643	0.540401	16	CAGGAAACAGAACAGCTGTCC	CAACAAATGGAAAAAC	+
id1#MA0120.1	-2	0.0107152	5.10042	0.547246	12	CAGGAAACAGAACAGCTGTCC	CGAAAAGGAAAA	-
MAX#MA0058.1	-9	0.0109906	5.23153	0.547246	10	CAGGAAACAGAACAGCTGTCC	AACCACGTGA	+
RTG3#MA0376.1	-5	0.011379	5.41641	0.547246	16	CAGGAAACAGAACAGCTGTCC	ATATTAGCACGTGCTTAGTC	+
Arnt#MA0004.1	-12	0.011564	5.50446	0.547246	6	CAGGAAACAGAACAGCTGTCC	CACGTG	+
SFL1#MA0377.1	0	0.0155987	7.42498	0.671074	21	CAGGAAACAGAACAGCTGTCC	TAGAGAATAGAAGAAATAAAA	+
USF1#MA0093.1	-11	0.0164991	7.85359	0.67895	7	CAGGAAACAGAACAGCTGTCC	CCACGTG	-
GAL4#MA0299.1	0	0.0183401	8.7299	0.708728	15	CAGGAAACAGAACAGCTGTCC	CGGGGAACAGTACTC	+
DOT6#MA0351.1	-2	0.0189792	9.03411	0.708728	19	CAGGAAACAGAACAGCTGTCC	AGGATGCGATGAGGTGCAGAA	-
HAC1#MA0310.1	-10	0.0199198	9.4818	0.708728	8	CAGGAAACAGAACAGCTGTCC	GACACGTG	+