Personal tools

MacroAPE 1083:YTCKCTT,motif512

From FANTOM5_SSTAR

Jump to: navigation, search

Full Name: YTCKCTT,motif512,CNhs13797,T:2474.0(60.91%),B:36177.9(51.67%),P:1e-31

Motif matrix
POACGT
12.4741316.168207.816947.542
22.4742.474536.8581932.194
32.4742466.5782.4742.474
42.4742.4741217.2081251.844
52.4741838.1822.474630.87
62.4742.474611.0781857.974
72.474465.1122.4742003.94

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Trl#MA0205.130.001573620.74904317CTCTCTTTTGCTCTCTC+
IRF1#MA0050.130.004969322.3653917CTCTCTTGGTTTCACTTTC-
IRF2#MA0051.180.008756254.1679717CTCTCTTGTTTTGCTTTCACTTTCC-
Klf4#MA0039.120.01174965.5928317CTCTCTTCCTTCCTTTA-
SWI4#MA0401.110.01323066.2977617CTCTCTTTTTCGCGT-
AZF1#MA0277.110.01456836.9345317CTCTCTTTTTCTTTTT-
YAP6#MA0418.100.01748848.324517CTCTCTTGTCGCTTACGTAATCAGACC-
MBP1#MA0329.100.01935949.2150917CTCTCTTTACGCGT-