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Genes, TSS regions, motifs, samples, etc profiled in FANTOM5.

Usage

  • Just click any in the left menue
  • Or, keyword search on top of this page.
  • Or, make a complex query at Special:Ask, if you are familiar with Semantic MediaWIki

Note

  • we are focusing on phase1 freeze, and we are still keep updating this.
  • contact: KAWAJI, Hideya <kawaji@gsc.riken.jp>, SHIMOJI, Hisashi <hisashi.shimoji@dnaform.jp>, or WP4 <fantom5-wp4@gsc.riken.jp>

Data source

See Data_source

Other browsers/resources


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  • Samples by
    • Browse_samples|Names
    • Browse_facet|Categories
    • Browse_series|Series of experiments
    • Browse_datatype|Data type
  • MCL coexpression
    • Browse_coexpression_clusters|Human
    • Browse_MCL_coexpression_mouse|Mouse
  • Ontologies
    • FF_Ontology_terms_list|FANTOM5 (FF)
    • Cell_Ontology_terms_list|Cell Type (CL)
    • Human_Disease_Ontology_terms_list|Disease (DOID)
    • Uber_Anatomy_Ontology_terms_list|Anatomy (UBERON)
  • Motif
    • Browse_MacroAPE|MacroAPE
    • Browse_swissregulon|Swissregulon
  • Transcription Factors
    • Browse Transcription Factors hg19|Human
    • Browse Transcription Factors mm9|Mouse
  • Genes, etc
    • Browse_genes|Genes
    • Browse_tss|TSSs