NonredundantMotifs:39

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant39
• db :SWISSREGULON
• Id :RFX1..5_RFXANK_RFXAP.p2
• name :RFX1
• score :0.4075571500297151
  
• External refs:

EntrezGene:RFX1
UniProt:RFX1

• Internal refs:

EntrezGene:RFX1

Motif matrix

P0 A C G T 1 16.702876 113.980829 69.440383 64.796271 2 57.221573 70.343766 99.035725 38.319295 3 33.559802 0.964677 230.39588 0 4 5.909997 18.534079 20.688174 219.788109 5 40.233566 138.299229 3.991899 82.395665 6 78.781332 7.898323 159.635927 18.604777 7 0 246.151065 0 18.769294 8 2.941368 219.655377 5.812932 36.510682 9 203.168924 26.506288 14.741298 20.503849 10 15.566443 30.368241 3.922422 215.063253 11 49.134137 0 215.786222 0 12 1.929997 0 262.990362 0 13 38.177179 184.502717 11.642711 30.597752 14 255.07742 1.929997 6.918904 0.994038 15 261.010494 0 3.909865 0 16 0 263.925107 0 0.995252 17 78.29687 90.163157 78.709988 17.750344 18 87.498768 30.410158 131.299536 15.711897