NonredundantMotifs:99

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant99
• db :SWISSREGULON
• Id :POU1F1.p2
• name :POU1F1
• score :0.08897946886078495
  
• External refs:

EntrezGene:POU1F1
UniProt:POU1F1

• Internal refs:

EntrezGene:POU1F1

Motif matrix

PO A C G T 1 150.777426 44.611516 32.472352 130.560797 2 187.054076 97.571089 2.239735 71.557191 3 7.133202 2.617048 0 348.671841 4 1.213245 19.709869 29.801076 307.697901 5 5.21749 344.674792 0 8.529809 6 276.185996 13.988609 2.991762 64.449095 7 34.55509 8.675708 6.585533 307.799131 8 233.719791 13.739452 59.091893 51.064326 9 186.751895 61.34396 3.437396 106.082211 10 148.372995 1.29093 9.184175 198.767362 11 2.435858 61.026678 27.551359 266.601567 12 266.658566 22.301906 63.723678 4.931312 13 59.842112 31.483195 8.371251 257.918904 14 200.493977 35.790009 13.080357 108.251119 15 89.746905 113.31144 22.930034 131.627083 16 164.661626 97.103343 12.78659 83.063903 17 70.065297 144.853788 19.843026 122.853351 18 229.463483 52.751705 6.064243 69.336031