Personal tools

UBERON:0000376

From FANTOM5_SSTAR

Jump to: navigation, search

Name:hindlimb stylopod
Namespace:FANTOM
Definition:"In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh]
Xrefs:
links:

AAO:0000199
BTO:0001376
EFO:0001943
EHDAA2:0002130
EHDAA:5171
EHDAA:6200
EMAPA:17499
FMA:24967
GAID:50
galen:Thigh
[ Gray1238.png Gray1238.png]
[ 200px-Gray1238.png 200px-Gray1238.png]
MA:0000052
MESH:A.01.378.610.750
ncithesaurus:Thigh
OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA
SCTID:302544002

VHOG:0000349
Synonyms: "femur" RELATED LATIN [Wikipedia:Thigh]
"fore propodium" EXACT [AAO:0000199]
"forelimb propodium" EXACT []
"hind limb stylopod" EXACT [OBOL:automatic]
"hindlimb stylopod" EXACT [OBOL:automatic]
"hindlimb stylopodium" EXACT [OBOL:automatic]
"inferior member stylopod" EXACT [OBOL:automatic]
"lower extremity stylopod" EXACT [OBOL:automatic]
"proximal segment of free lower limb" EXACT [FMA:24967]
"stylopod of hind limb" EXACT [OBOL:automatic]
"stylopod of hindlimb" EXACT [OBOL:automatic]
"stylopod of inferior member" EXACT [OBOL:automatic]
"stylopod of lower extremity" EXACT [OBOL:automatic]
"stylopod of lower limb" EXACT []
"thigh" EXACT []
"upper leg" EXACT [MA:0000052]
Comments:Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
Alt_id: UBERON:BTO_0001376-FMA_24967

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002472(stylopod),UBERON:0008784(lower limb segment)
part_of:UBERON:0002103(hindlimb),UBERON:0000978(leg),UBERON:0002103(hindlimb)



Children

part of:UBERON:0000981 (femur),UBERON:0001374 (biceps femoris),UBERON:0003826 (upper leg bone),UBERON:0004252 (hindlimb stylopod muscle),UBERON:0005254 (upper leg mesenchyme),UBERON:0015052 (femur endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000376 (hindlimb stylopod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.65e-69FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_6942e8c282ca830d23e0405e8d9f2acep@chr8:75097542..75097549, +
1.65e-69FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_6942e8c282ca830d23e0405e8d9f2acep@chr2:32482372..32482381, +
1.65e-69FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_6942e8c282ca830d23e0405e8d9f2acep@chr8:75097542..75097549, +
1.65e-69FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_6942e8c282ca830d23e0405e8d9f2acep@chr2:32482372..32482381, +
4.2e-56FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_368f072f827cad3cb4001ff58379a486p@chr16:24096441..24096449, +
4.2e-56FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_368f072f827cad3cb4001ff58379a486p@chr1:174140324..174140335, -
4.2e-56FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_368f072f827cad3cb4001ff58379a486p@chr11:67063327..67063335, +
4.2e-56FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_368f072f827cad3cb4001ff58379a486p@chr16:24096441..24096449, +
4.2e-56FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_368f072f827cad3cb4001ff58379a486p@chr1:174140324..174140335, -
4.2e-56FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_368f072f827cad3cb4001ff58379a486p@chr11:67063327..67063335, +
5.81e-56FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_387180ba04bd9a9348d884588fadd8eep@chr1:174143249..174143260, -
5.81e-56FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_387180ba04bd9a9348d884588fadd8eep@chr1:174143249..174143260, -
1.64e-52FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_52486fe40fd4715ea5a2c831a4dea303p@chr12:70396969..70396979, +
1.64e-52FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_52486fe40fd4715ea5a2c831a4dea303p@chr12:70396969..70396979, +
1.54e-49FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_a224e26fcde651e8de91de2fa1125b91p@chr19:4876870..4876880, -
1.54e-49FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_a224e26fcde651e8de91de2fa1125b91p@chr19:4876870..4876880, -
1.49e-48FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_ba8fcf1be986388e95f2d1911fddbe87p3@Asb16
1.49e-48FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_ba8fcf1be986388e95f2d1911fddbe87p3@Asb16
3.7e-47FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_0b795d4ebd9ad8403ac9ca5af4c61962p@chr11:75409652..75409664, +
3.7e-47FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_0b795d4ebd9ad8403ac9ca5af4c61962p@chr11:75409652..75409664, +
1.43e-46FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_6714a120122660bd278e6da257360a8ap@chr8:126415826..126415839, +
1.43e-46FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_6714a120122660bd278e6da257360a8ap@chr8:126415826..126415839, +
3.43e-44FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_afd9c4c993501dc1af2f07448e3db20dp@chr7:133604286..133604297, -
3.43e-44FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_afd9c4c993501dc1af2f07448e3db20dp@chr7:133604286..133604297, -
1.74e-43FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_bfef0a0c909ae61267c8f4d725c5484cp5@Pla2g5
1.74e-43FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_bfef0a0c909ae61267c8f4d725c5484cp5@Pla2g5
1.46e-40FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4a4a0d741d6202463c3918c9b17e644ap@chr11:67056544..67056589, -
1.46e-40FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4a4a0d741d6202463c3918c9b17e644ap@chr11:67056544..67056589, -
1.84e-40FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_efc1b019bd9135079369527cf7edfba4p@chr6:90552017..90552024, +
1.84e-40FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_efc1b019bd9135079369527cf7edfba4p@chr6:90552017..90552024, +
2.32e-40FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_656401e830db202d5866656b54991cfap@chr6:34436258..34436292, +
2.32e-40FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_656401e830db202d5866656b54991cfap@chr6:34436258..34436292, +
3.69e-40FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_7b50d5afa18fd81d19bb72c9c93a6cadp@chr11:67069796..67069817, -
3.69e-40FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_7b50d5afa18fd81d19bb72c9c93a6cadp@chr11:67069796..67069817, -
4.64e-40FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_2eb1638b987b03bde529f5dd2555d42bp@chr8:107702369..107702386, +
4.64e-40FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_2eb1638b987b03bde529f5dd2555d42bp@chr8:107702369..107702386, +
7.27e-40FFCP PHASE1:Mm9::chr14:70207601..70207626,+#_da42159903604a30e5e1d857ec71c362p@chr14:70207601..70207626, +
7.27e-40FFCP PHASE1:Mm9::chr1:174140351..174140357,-#_da42159903604a30e5e1d857ec71c362p@chr1:174140351..174140357, -
7.27e-40FFCP PHASE1:Mm9::chr1:66991496..66991506,+#_da42159903604a30e5e1d857ec71c362p@chr1:66991496..66991506, +
7.27e-40FFCP PHASE2:Mm9::chr11:67062759..67062768,+#_da42159903604a30e5e1d857ec71c362p@chr11:67062759..67062768, +
7.27e-40FFCP PHASE2:Mm9::chr16:77077366..77077377,+#_da42159903604a30e5e1d857ec71c362p@chr16:77077366..77077377, +
7.27e-40FFCP PHASE2:Mm9::chr1:174140351..174140357,-#_da42159903604a30e5e1d857ec71c362p@chr1:174140351..174140357, -
7.27e-40FFCP PHASE2:Mm9::chr4:150276182..150276195,-#_da42159903604a30e5e1d857ec71c362p13@Park7
7.27e-40FFCP PHASE1:Mm9::chr16:77077366..77077377,+#_da42159903604a30e5e1d857ec71c362p@chr16:77077366..77077377, +
7.27e-40FFCP PHASE1:Mm9::chr11:67059271..67059285,+#_da42159903604a30e5e1d857ec71c362p@chr11:67059271..67059285, +
7.27e-40FFCP PHASE1:Mm9::chr4:150276182..150276195,-#_da42159903604a30e5e1d857ec71c362p13@Park7
7.27e-40FFCP PHASE1:Mm9::chr11:67062759..67062768,+#_da42159903604a30e5e1d857ec71c362p@chr11:67062759..67062768, +
7.27e-40FFCP PHASE2:Mm9::chr11:67059271..67059285,+#_da42159903604a30e5e1d857ec71c362p@chr11:67059271..67059285, +
7.27e-40FFCP PHASE2:Mm9::chr1:66991496..66991506,+#_da42159903604a30e5e1d857ec71c362p@chr1:66991496..66991506, +
7.27e-40FFCP PHASE2:Mm9::chr14:70207601..70207626,+#_da42159903604a30e5e1d857ec71c362p@chr14:70207601..70207626, +
9.85e-40FFCP PHASE2:Mm9::chr11:67068279..67068289,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr11:67068279..67068289, +
9.85e-40FFCP PHASE1:Mm9::chr11:67068279..67068289,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr11:67068279..67068289, +
9.85e-40FFCP PHASE1:Mm9::chr2:52119179..52119188,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr2:52119179..52119188, -
9.85e-40FFCP PHASE2:Mm9::chr7:12485281..12485286,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:12485281..12485286, +
9.85e-40FFCP PHASE1:Mm9::chr7:133602405..133602416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:133602405..133602416, -
9.85e-40FFCP PHASE2:Mm9::chr7:133590511..133590515,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:133590511..133590515, -
9.85e-40FFCP PHASE2:Mm9::chr7:133602405..133602416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:133602405..133602416, -
9.85e-40FFCP PHASE2:Mm9::chr2:52119179..52119188,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr2:52119179..52119188, -
9.85e-40FFCP PHASE2:Mm9::chr7:133591409..133591416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p11@Atp2a1
9.85e-40FFCP PHASE1:Mm9::chr7:133591409..133591416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p11@Atp2a1
9.85e-40FFCP PHASE1:Mm9::chr7:12485281..12485286,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:12485281..12485286, +
9.85e-40FFCP PHASE1:Mm9::chr7:133590511..133590515,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341p@chr7:133590511..133590515, -
1.33e-39FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_4dcdffd97c4d180e8954dd94d7ae940ap26@Myo18a
1.33e-39FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_4dcdffd97c4d180e8954dd94d7ae940ap26@Myo18a
1.8e-39FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_a548a7118cc934d95fa67f68cd2afb67p@chr9:21934585..21934591, -
1.8e-39FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_a548a7118cc934d95fa67f68cd2afb67p@chr9:21934585..21934591, -
1.01e-37FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_1d7804792be7ba5a783f30b800baaa79p@chr2:32482387..32482399, +
1.01e-37FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_1d7804792be7ba5a783f30b800baaa79p@chr2:32482387..32482399, +
5.61e-37FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_36fa18f9ea58c0bb953c23bb9d5d5dfbp@chr7:133590998..133591009, -
5.61e-37FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_36fa18f9ea58c0bb953c23bb9d5d5dfbp@chr7:133590998..133591009, -
6.65e-37FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_ef49f929815ebeaafe84f4ad444ac06dp2@Myoz3
6.65e-37FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_ef49f929815ebeaafe84f4ad444ac06dp2@Myoz3
9.33e-37FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a0c9a2b2c2201877175dea2f242d8dd2p2@Myh4
9.33e-37FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a0c9a2b2c2201877175dea2f242d8dd2p2@Myh4
5.77e-36FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_0c663783652ba97bae0108b8e752653fp@chr2:180890942..180890956, -
5.77e-36FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_0c663783652ba97bae0108b8e752653fp@chr2:180890942..180890956, -
7.08e-36FFCP PHASE2:Mm9::chr4:99628094..99628114,+#_c73d73e05642b6950f9f6b7eac015ad2p6@Pgm2
7.08e-36FFCP PHASE1:Mm9::chr4:99628094..99628114,+#_c73d73e05642b6950f9f6b7eac015ad2p6@Pgm2
7.08e-36FFCP PHASE1:Mm9::chr12:15936419..15936439,+#_c73d73e05642b6950f9f6b7eac015ad2p@chr12:15936419..15936439, +
7.08e-36FFCP PHASE2:Mm9::chr12:15936419..15936439,+#_c73d73e05642b6950f9f6b7eac015ad2p@chr12:15936419..15936439, +
1.3e-35FFCP PHASE1:Mm9::chr2:76729527..76729535,-#_d2542315a0582bf5899c5b13e86f5bcdp@chr2:76729527..76729535, -
1.3e-35FFCP PHASE2:Mm9::chr7:58766361..58766370,+#_d2542315a0582bf5899c5b13e86f5bcdp3@Ano5
1.3e-35FFCP PHASE2:Mm9::chr2:76729527..76729535,-#_d2542315a0582bf5899c5b13e86f5bcdp@chr2:76729527..76729535, -
1.3e-35FFCP PHASE1:Mm9::chr7:58766361..58766370,+#_d2542315a0582bf5899c5b13e86f5bcdp3@Ano5
1.42e-35FFCP PHASE1:Mm9::chr15:78021983..78021992,-#_eb398252daded704f71a4cfa77cb966ap@chr15:78021983..78021992, -
1.42e-35FFCP PHASE1:Mm9::chr11:67066194..67066212,-#_eb398252daded704f71a4cfa77cb966ap@chr11:67066194..67066212, -
1.42e-35FFCP PHASE2:Mm9::chr19:4871076..4871091,+#_eb398252daded704f71a4cfa77cb966ap@chr19:4871076..4871091, +
1.42e-35FFCP PHASE2:Mm9::chr4:150281470..150281484,-#_eb398252daded704f71a4cfa77cb966ap@chr4:150281470..150281484, -
1.42e-35FFCP PHASE2:Mm9::chr15:83962465..83962470,-#_eb398252daded704f71a4cfa77cb966ap@chr15:83962465..83962470, -
1.42e-35FFCP PHASE2:Mm9::chr15:78021983..78021992,-#_eb398252daded704f71a4cfa77cb966ap@chr15:78021983..78021992, -
1.42e-35FFCP PHASE1:Mm9::chr15:83962465..83962470,-#_eb398252daded704f71a4cfa77cb966ap@chr15:83962465..83962470, -
1.42e-35FFCP PHASE1:Mm9::chr19:4871076..4871091,+#_eb398252daded704f71a4cfa77cb966ap@chr19:4871076..4871091, +
1.42e-35FFCP PHASE1:Mm9::chr11:67064461..67064462,-#_eb398252daded704f71a4cfa77cb966ap@chr11:67064461..67064462, -
1.42e-35FFCP PHASE1:Mm9::chr4:150281470..150281484,-#_eb398252daded704f71a4cfa77cb966ap@chr4:150281470..150281484, -
1.42e-35FFCP PHASE2:Mm9::chr11:67066194..67066212,-#_eb398252daded704f71a4cfa77cb966ap@chr11:67066194..67066212, -
1.42e-35FFCP PHASE2:Mm9::chr11:67064461..67064462,-#_eb398252daded704f71a4cfa77cb966ap@chr11:67064461..67064462, -
1.42e-35FFCP PHASE2:Mm9::chr2:180892493..180892512,-#_eb398252daded704f71a4cfa77cb966ap@chr2:180892493..180892512, -
1.42e-35FFCP PHASE2:Mm9::chr11:75572402..75572409,+#_eb398252daded704f71a4cfa77cb966ap@chr11:75572402..75572409, +
1.42e-35FFCP PHASE1:Mm9::chr7:134353840..134353843,-#_eb398252daded704f71a4cfa77cb966ap@chr7:134353840..134353843, -
1.42e-35FFCP PHASE2:Mm9::chr7:51761564..51761580,-#_eb398252daded704f71a4cfa77cb966ap@chr7:51761564..51761580, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Segment of the forearm corresponding to the humerus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000376&oldid=3277104"