UBERON:0002316

Name:	white matter
Namespace:	FANTOM
Definition:	"Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
Xrefs:	Expandlinks: AEO:0000139 FMA:83929 [1] [ 200px-Spinal_nerve.svg.png] MA:0001135 ncithesaurus:White_Matter NIF_GrossAnatomy:Class_2 OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA TAO:0000145 TAO:0002142 TAO:0002143 ZFA:0001682
Synonyms:	"substantia alba" RELATED LATIN [Wikipedia:White_matter] "white matter of neuraxis" EXACT [FMA:83929] "white substance" EXACT []
Comments:	This class was created automatically from a combination of ontologies
Alt_id:	UBERON:FMA_83929-MA_0001135
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0011215(central nervous system cell part cluster)
part_of:	UBERON:0001017(central nervous system)

Children

is a:	UBERON:0003544 (brain white matter)
part of:	UBERON:0007702 (tract of brain)

Ontology Tree: Loaded from BioPortal

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FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10042-101F6 (corpus callosum, adult, pool1)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002316 (white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.42e-195	FFCP PHASE1:Hg19::chr14:36462819..36462832,+	p@chr14:36462819..36462832, +
5.42e-195	FFCP PHASE2:Hg19::chr14:36462819..36462832,+	p@chr14:36462819..36462832, +
5.42e-195	FFCP PHASE1:Hg19::chr17:73689469..73689476,-	p@chr17:73689469..73689476, -
5.42e-195	FFCP PHASE2:Hg19::chr5:60927228..60927236,-	p3@BC032909, p3@BC032910
5.42e-195	FFCP PHASE1:Hg19::chr5:60927228..60927236,-	p3@BC032909, p3@BC032910
5.42e-195	FFCP PHASE2:Hg19::chr15:93827399..93827403,+	p@chr15:93827399..93827403, +
5.42e-195	FFCP PHASE1:Hg19::chr15:93827399..93827403,+	p@chr15:93827399..93827403, +
5.42e-195	FFCP PHASE2:Hg19::chr17:73689469..73689476,-	p@chr17:73689469..73689476, -
9.37e-99	FFCP PHASE1:Hg19::chr14:33926303..33926307,-	p@chr14:33926303..33926307, -
9.37e-99	FFCP PHASE2:Hg19::chr14:33926303..33926307,-	p@chr14:33926303..33926307, -
9.37e-99	FFCP PHASE1:Hg19::chr12:78359873..78359882,+	p41@NAV3
9.37e-99	FFCP PHASE2:Hg19::chr12:78359873..78359882,+	p41@NAV3
9.37e-99	FFCP PHASE2:Hg19::chr11:110248322..110248329,-	p@chr11:110248322..110248329, -
9.37e-99	FFCP PHASE1:Hg19::chr11:110248322..110248329,-	p@chr11:110248322..110248329, -
9.37e-99	FFCP PHASE2:Hg19::chr2:232548018..232548022,-	p@chr2:232548018..232548022, -
9.37e-99	FFCP PHASE1:Hg19::chr2:232548018..232548022,-	p@chr2:232548018..232548022, -
2.55e-98	FFCP PHASE1:Hg19::chr19:35788742..35788752,+	p@chr19:35788742..35788752, +
2.55e-98	FFCP PHASE2:Hg19::chr3:15374659..15374696,-	p10@SH3BP5
2.55e-98	FFCP PHASE1:Hg19::chr3:15374659..15374696,-	p10@SH3BP5
2.55e-98	FFCP PHASE2:Hg19::chr19:35788742..35788752,+	p@chr19:35788742..35788752, +
1.23e-66	FFCP PHASE1:Hg19::chr8:42037488..42037504,+	p@chr8:42037488..42037504, +
1.23e-66	FFCP PHASE2:Hg19::chr7:124391226..124391235,-	p@chr7:124391226..124391235, -
1.23e-66	FFCP PHASE2:Hg19::chr17:72823919..72823924,-	p@chr17:72823919..72823924, -
1.23e-66	FFCP PHASE1:Hg19::chr7:124391226..124391235,-	p@chr7:124391226..124391235, -
1.23e-66	FFCP PHASE2:Hg19::chr10:73479518..73479527,-	p5@C10orf105
1.23e-66	FFCP PHASE1:Hg19::chr10:73479518..73479527,-	p5@C10orf105
1.23e-66	FFCP PHASE1:Hg19::chr12:78359680..78359686,+	p32@NAV3
1.23e-66	FFCP PHASE2:Hg19::chr12:78359680..78359686,+	p32@NAV3
1.23e-66	FFCP PHASE1:Hg19::chr17:72823919..72823924,-	p@chr17:72823919..72823924, -
1.23e-66	FFCP PHASE2:Hg19::chr8:42037488..42037504,+	p@chr8:42037488..42037504, +
2.39e-66	FFCP PHASE2:Hg19::chr6:163681762..163681767,+	p@chr6:163681762..163681767, +
2.39e-66	FFCP PHASE2:Hg19::chr10:61043452..61043467,-	p16@FAM13C
2.39e-66	FFCP PHASE2:Hg19::chr10:25012236..25012245,-	p24@ARHGAP21
2.39e-66	FFCP PHASE1:Hg19::chr6:163681762..163681767,+	p@chr6:163681762..163681767, +
2.39e-66	FFCP PHASE1:Hg19::chr10:61043452..61043467,-	p16@FAM13C
2.39e-66	FFCP PHASE1:Hg19::chr10:25012236..25012245,-	p24@ARHGAP21
4.66e-66	FFCP PHASE1:Hg19::chr5:35089832..35089839,-	p26@PRLR
4.66e-66	FFCP PHASE1:Hg19::chr17:40120071..40120085,+	p15@CNP
4.66e-66	FFCP PHASE1:Hg19::chr7:129015806..129015815,+	p@chr7:129015806..129015815, +
4.66e-66	FFCP PHASE1:Hg19::chr7:129012882..129012891,-	p@chr7:129012882..129012891, -
4.66e-66	FFCP PHASE2:Hg19::chr4:174293011..174293022,-	p@chr4:174293011..174293022, -
4.66e-66	FFCP PHASE2:Hg19::chr4:645709..645712,+	p15@PDE6B
4.66e-66	FFCP PHASE1:Hg19::chr13:99135698..99135706,+	p@chr13:99135698..99135706, +
4.66e-66	FFCP PHASE2:Hg19::chr13:99135698..99135706,+	p@chr13:99135698..99135706, +
4.66e-66	FFCP PHASE1:Hg19::chr14:91199850..91199861,-	p@chr14:91199850..91199861, -
4.66e-66	FFCP PHASE2:Hg19::chr14:91199850..91199861,-	p@chr14:91199850..91199861, -
4.66e-66	FFCP PHASE1:Hg19::chr4:174293011..174293022,-	p@chr4:174293011..174293022, -
4.66e-66	FFCP PHASE2:Hg19::chr8:101522298..101522305,-	p@chr8:101522298..101522305, -
4.66e-66	FFCP PHASE1:Hg19::chr4:645709..645712,+	p15@PDE6B
4.66e-66	FFCP PHASE2:Hg19::chr5:35089799..35089804,-	p20@PRLR
4.66e-66	FFCP PHASE1:Hg19::chr8:101522298..101522305,-	p@chr8:101522298..101522305, -
4.66e-66	FFCP PHASE1:Hg19::chr5:35089799..35089804,-	p20@PRLR
4.66e-66	FFCP PHASE2:Hg19::chr5:35089832..35089839,-	p26@PRLR
4.66e-66	FFCP PHASE2:Hg19::chr17:40120071..40120085,+	p15@CNP
4.66e-66	FFCP PHASE2:Hg19::chr7:129015806..129015815,+	p@chr7:129015806..129015815, +
4.66e-66	FFCP PHASE2:Hg19::chr7:129012882..129012891,-	p@chr7:129012882..129012891, -
1.46e-50	FFCP PHASE1:Hg19::chr6:170571770..170571782,-	p2@LOC154449
1.46e-50	FFCP PHASE2:Hg19::chr6:170571770..170571782,-	p2@LOC154449
2.42e-50	FFCP PHASE1:Hg19::chr10:7454514..7454525,-	p@chr10:7454514..7454525, -
2.42e-50	FFCP PHASE1:Hg19::chr12:106697974..106697990,-	p31@CKAP4
2.42e-50	FFCP PHASE2:Hg19::chrX:103031196..103031205,-	p@chrX:103031196..103031205, -
2.42e-50	FFCP PHASE2:Hg19::chr12:106697974..106697990,-	p31@CKAP4
2.42e-50	FFCP PHASE2:Hg19::chr19:15751984..15751994,+	p6@CYP4F3
2.42e-50	FFCP PHASE1:Hg19::chrX:103031196..103031205,-	p@chrX:103031196..103031205, -
2.42e-50	FFCP PHASE2:Hg19::chr7:30202318..30202329,+	p@chr7:30202318..30202329, +
2.42e-50	FFCP PHASE1:Hg19::chr19:15751984..15751994,+	p6@CYP4F3
2.42e-50	FFCP PHASE2:Hg19::chr4:74005833..74005844,-	p@chr4:74005833..74005844, -
2.42e-50	FFCP PHASE2:Hg19::chr11:133996343..133996351,+	p8@JAM3
2.42e-50	FFCP PHASE1:Hg19::chr11:133996343..133996351,+	p8@JAM3
2.42e-50	FFCP PHASE1:Hg19::chr7:30202318..30202329,+	p@chr7:30202318..30202329, +
2.42e-50	FFCP PHASE1:Hg19::chr4:74005833..74005844,-	p@chr4:74005833..74005844, -
2.42e-50	FFCP PHASE2:Hg19::chr10:7454514..7454525,-	p@chr10:7454514..7454525, -
3.99e-50	FFCP PHASE1:Hg19::chr17:36726052..36726061,-	p@chr17:36726052..36726061, -
3.99e-50	FFCP PHASE2:Hg19::chr11:45922629..45922637,+	p@chr11:45922629..45922637, +
3.99e-50	FFCP PHASE1:Hg19::chr11:45922629..45922637,+	p@chr11:45922629..45922637, +
3.99e-50	FFCP PHASE2:Hg19::chr3:160203278..160203289,-	p8@TRIM59
3.99e-50	FFCP PHASE2:Hg19::chr6:164364681..164364684,-	p@chr6:164364681..164364684, -
3.99e-50	FFCP PHASE1:Hg19::chr3:160203278..160203289,-	p8@TRIM59
3.99e-50	FFCP PHASE1:Hg19::chr6:164364681..164364684,-	p@chr6:164364681..164364684, -
3.99e-50	FFCP PHASE2:Hg19::chr9:20927844..20927855,+	p@chr9:20927844..20927855, +
3.99e-50	FFCP PHASE1:Hg19::chr9:20927844..20927855,+	p@chr9:20927844..20927855, +
3.99e-50	FFCP PHASE2:Hg19::chr17:36726052..36726061,-	p@chr17:36726052..36726061, -
6.58e-50	FFCP PHASE1:Hg19::chr4:7412700..7412704,+	p@chr4:7412700..7412704, +
6.58e-50	FFCP PHASE2:Hg19::chr3:10706167..10706179,-	p@chr3:10706167..10706179, -
6.58e-50	FFCP PHASE2:Hg19::chrX:28605300..28605301,+	p8@IL1RAPL1
6.58e-50	FFCP PHASE1:Hg19::chr3:190578500..190578506,-	p@chr3:190578500..190578506, -
6.58e-50	FFCP PHASE1:Hg19::chr3:10706167..10706179,-	p@chr3:10706167..10706179, -
6.58e-50	FFCP PHASE1:Hg19::chrX:28605300..28605301,+	p8@IL1RAPL1
6.58e-50	FFCP PHASE2:Hg19::chr11:67190503..67190512,+	p8@CARNS1
6.58e-50	FFCP PHASE2:Hg19::chr9:112191163..112191174,-	p10@PTPN3
6.58e-50	FFCP PHASE2:Hg19::chr2:219610931..219610941,+	p13@TTLL4
6.58e-50	FFCP PHASE2:Hg19::chr11:117585539..117585541,-	p@chr11:117585539..117585541, -
6.58e-50	FFCP PHASE1:Hg19::chr9:112191163..112191174,-	p10@PTPN3
6.58e-50	FFCP PHASE1:Hg19::chr11:67190503..67190512,+	p8@CARNS1
6.58e-50	FFCP PHASE1:Hg19::chr11:117585539..117585541,-	p@chr11:117585539..117585541, -
6.58e-50	FFCP PHASE2:Hg19::chr6:133119649..133119655,-	p6@C6orf192
6.58e-50	FFCP PHASE1:Hg19::chr2:219610931..219610941,+	p13@TTLL4
6.58e-50	FFCP PHASE1:Hg19::chr12:99288459..99288464,-	p38@ANKS1B
6.58e-50	FFCP PHASE2:Hg19::chr12:99288459..99288464,-	p38@ANKS1B
6.58e-50	FFCP PHASE2:Hg19::chr4:7412700..7412704,+	p@chr4:7412700..7412704, +

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Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.