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UBERON:0002619

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Name:regional part of cerebral cortex
Namespace:FANTOM
Definition:"A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:242193
MA:0000187
NIF_GrossAnatomy:birnlex_1173

SCTID:119408004
Synonyms: "cerebral cortex part" EXACT []
"region of cerebral cortex" EXACT [FMA:242193]
"segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173]
Comments:todo - check MA term
Alt_id: UBERON:0003208
UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002791(regional part of telencephalon)
part_of:UBERON:0000956(cerebral cortex)



Children

is a:UBERON:0000411 (visual cortex),UBERON:0001950 (neocortex),UBERON:0003022 (lobe parts of cerebral cortex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002619 (regional part of cerebral cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.39e-147FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_9c43c1a3f73aa62d6e6dc1f717ca81a5p@chr10:11047712..11047726, +
6.39e-147FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_9c43c1a3f73aa62d6e6dc1f717ca81a5p@chr10:11047712..11047726, +
2.03e-143FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_09f626665f3868d91fb08460cf80cc28p1@ENST00000518631
2.03e-143FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_09f626665f3868d91fb08460cf80cc28p1@ENST00000518631
3.12e-135FFCP PHASE2:Hg19::chr10:10504250..10504278,+#_593e33466ff4b2474fc9a7f67afd6c6ap@chr10:10504250..10504278, +
3.12e-135FFCP PHASE1:Hg19::chr10:10504250..10504278,+#_593e33466ff4b2474fc9a7f67afd6c6ap@chr10:10504250..10504278, +
5.14e-135FFCP PHASE1:Hg19::chr18:70305745..70305761,-#_cc9539d68b3e99b101842c5174e64c8cp@chr18:70305745..70305761, -
5.14e-135FFCP PHASE2:Hg19::chr18:70305745..70305761,-#_cc9539d68b3e99b101842c5174e64c8cp@chr18:70305745..70305761, -
3.13e-133FFCP PHASE2:Hg19::chr18:70305621..70305634,-#_20a7830520074461aec69a87b075a2a7p@chr18:70305621..70305634, -
3.13e-133FFCP PHASE1:Hg19::chr18:70305621..70305634,-#_20a7830520074461aec69a87b075a2a7p@chr18:70305621..70305634, -
4.09e-133FFCP PHASE1:Hg19::chr22:43821065..43821115,+#_d6a0428dac670c9633439fc96f60c5b1p4@MPPED1
4.09e-133FFCP PHASE2:Hg19::chr22:43821065..43821115,+#_d6a0428dac670c9633439fc96f60c5b1p4@MPPED1
1.23e-128FFCP PHASE1:Hg19::chr10:11047746..11047768,+#_a374ec0d693f9bc92cd90518f657eca6p@chr10:11047746..11047768, +
1.23e-128FFCP PHASE2:Hg19::chr10:11047746..11047768,+#_a374ec0d693f9bc92cd90518f657eca6p@chr10:11047746..11047768, +
5.96e-126FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_342b17e86a386e1a653ef18e210193a0p@chr19:54462560..54462571, +
5.96e-126FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_342b17e86a386e1a653ef18e210193a0p@chr19:54462560..54462571, +
3.78e-125FFCP PHASE1:Hg19::chr10:11046599..11046616,+#_6d2ca38825dd1789b8520563e60a48adp@chr10:11046599..11046616, +
3.78e-125FFCP PHASE2:Hg19::chr10:11046599..11046616,+#_6d2ca38825dd1789b8520563e60a48adp@chr10:11046599..11046616, +
8.7e-125FFCP PHASE2:Hg19::chr8:110987986..110988010,-#_6fcda0d3ff8d945d7ed5b0890ee30e79p1@KCNV1
8.7e-125FFCP PHASE1:Hg19::chr8:110987986..110988010,-#_6fcda0d3ff8d945d7ed5b0890ee30e79p1@KCNV1
1.21e-124FFCP PHASE2:Hg19::chr5:17404114..17404134,+#_ce48a8379c6753177e64e9db12b8aa7ep1@ENST00000508677
1.21e-124FFCP PHASE1:Hg19::chr5:17404114..17404134,+#_ce48a8379c6753177e64e9db12b8aa7ep1@ENST00000508677
1.58e-124FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_a8d6eced612acbecf585966bf109c447p8@OPCML
1.58e-124FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_a8d6eced612acbecf585966bf109c447p8@OPCML
1.06e-123FFCP PHASE1:Hg19::chr14:70546905..70546935,-#_3c0699948606ff2af89a35680d5da4aep3@SLC8A3
1.06e-123FFCP PHASE2:Hg19::chr14:70546905..70546935,-#_3c0699948606ff2af89a35680d5da4aep3@SLC8A3
1.29e-122FFCP PHASE2:Hg19::chr16:758668..758696,+#_2cddf32e6c843758e15d03323faba0d1p@chr16:758668..758696, +
1.29e-122FFCP PHASE1:Hg19::chr16:758668..758696,+#_2cddf32e6c843758e15d03323faba0d1p@chr16:758668..758696, +
1.69e-122FFCP PHASE1:Hg19::chr5:22754690..22754720,+#_523067231d497a7a3b947edefc9ad71fp@chr5:22754690..22754720, +
1.69e-122FFCP PHASE2:Hg19::chr5:22754690..22754720,+#_523067231d497a7a3b947edefc9ad71fp@chr5:22754690..22754720, +
1.94e-122FFCP PHASE2:Hg19::chr8:67405573..67405590,+#_0b0e7b16991655aa9eef51ce6a3787bbp7@C8orf46
1.94e-122FFCP PHASE1:Hg19::chr8:67405573..67405590,+#_0b0e7b16991655aa9eef51ce6a3787bbp7@C8orf46
9.52e-122FFCP PHASE2:Hg19::chr9:10612907..10612918,-#_4b0cfc1730bd5de594eac69c72a4e11dp17@PTPRD
9.52e-122FFCP PHASE1:Hg19::chr9:10612907..10612918,-#_4b0cfc1730bd5de594eac69c72a4e11dp17@PTPRD
2.69e-121FFCP PHASE1:Hg19::chr12:62585176..62585196,-#_264a36cba1cc0b6641f1f14b905d03a0p14@FAM19A2
2.69e-121FFCP PHASE2:Hg19::chr12:62585176..62585196,-#_264a36cba1cc0b6641f1f14b905d03a0p14@FAM19A2
3.31e-121FFCP PHASE1:Hg19::chr10:11047633..11047685,+#_d5bec0ac0a7e7678690caf9349e86fe6p@chr10:11047633..11047685, +
3.31e-121FFCP PHASE2:Hg19::chr10:11047633..11047685,+#_d5bec0ac0a7e7678690caf9349e86fe6p@chr10:11047633..11047685, +
3.47e-121FFCP PHASE1:Hg19::chr18:70305699..70305738,-#_30fe0ac374b73820a490e55614ee133cp@chr18:70305699..70305738, -
3.47e-121FFCP PHASE2:Hg19::chr18:70305699..70305738,-#_30fe0ac374b73820a490e55614ee133cp@chr18:70305699..70305738, -
4.77e-121FFCP PHASE1:Hg19::chr6:160311995..160312034,+#_ac424b279878b80f7d71cdf42cf73549p@chr6:160311995..160312034, +
4.77e-121FFCP PHASE2:Hg19::chr6:160311995..160312034,+#_ac424b279878b80f7d71cdf42cf73549p@chr6:160311995..160312034, +
7.04e-121FFCP PHASE2:Hg19::chr12:87232669..87232696,-#_cfe9a02c4c3b37600c168448c8a39749p6@MGAT4C
7.04e-121FFCP PHASE1:Hg19::chr12:87232669..87232696,-#_cfe9a02c4c3b37600c168448c8a39749p6@MGAT4C
7.04e-121FFCP PHASE1:Hg19::chr11:133402347..133402360,-#_cfe9a02c4c3b37600c168448c8a39749p6@OPCML
7.04e-121FFCP PHASE2:Hg19::chr11:133402347..133402360,-#_cfe9a02c4c3b37600c168448c8a39749p6@OPCML
3.65e-120FFCP PHASE2:Hg19::chr8:110986427..110986445,-#_eddc8e570ab22f4421fddfbf1ac01bebp4@KCNV1
3.65e-120FFCP PHASE1:Hg19::chr8:110986427..110986445,-#_eddc8e570ab22f4421fddfbf1ac01bebp4@KCNV1
6.45e-120FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_3176d312caa66e227b2eabf6afc637d4p3@PDYN
6.45e-120FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_3176d312caa66e227b2eabf6afc637d4p3@PDYN
6.9e-120FFCP PHASE1:Hg19::chr4:39064313..39064326,+#_f6573b753544480f277cde99fbced321p7@KLHL5
6.9e-120FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f6573b753544480f277cde99fbced321p1@ENST00000511849
6.9e-120FFCP PHASE2:Hg19::chr4:39064313..39064326,+#_f6573b753544480f277cde99fbced321p7@KLHL5
6.9e-120FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f6573b753544480f277cde99fbced321p1@ENST00000511849
3.39e-119FFCP PHASE1:Hg19::chr6:12718426..12718446,+#_dd58c678a707930072e1882bd654e4c1p24@PHACTR1
3.39e-119FFCP PHASE2:Hg19::chr6:12718426..12718446,+#_dd58c678a707930072e1882bd654e4c1p24@PHACTR1
4.33e-118FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_1698ed3d73fe0164623e5c5451cfb160p@chr15:30231269..30231299, -
4.33e-118FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_1698ed3d73fe0164623e5c5451cfb160p@chr15:30231269..30231299, -
5.62e-118FFCP PHASE2:Hg19::chr11:45564023..45564028,-#_1d795cd13239a1df21424e875136ab40p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
5.62e-118FFCP PHASE1:Hg19::chr11:45564023..45564028,-#_1d795cd13239a1df21424e875136ab40p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
1.93e-117FFCP PHASE2:Hg19::chr10:116852602..116852626,+#_86bedcbf8c192e58010f9b86e286798ep5@ATRNL1
1.93e-117FFCP PHASE1:Hg19::chr10:116852602..116852626,+#_86bedcbf8c192e58010f9b86e286798ep5@ATRNL1
2.85e-117FFCP PHASE1:Hg19::chr5:94621232..94621256,-#_93b09a47551adc54d1a428b89fb1eea5p@chr5:94621232..94621256, -
2.85e-117FFCP PHASE2:Hg19::chr5:94621232..94621256,-#_93b09a47551adc54d1a428b89fb1eea5p@chr5:94621232..94621256, -
3.31e-117FFCP PHASE2:Hg19::chr2:136343886..136343897,+#_463b50b4a23dc1f0b36fb48082a4c364p4@R3HDM1
3.31e-117FFCP PHASE1:Hg19::chr2:136343886..136343897,+#_463b50b4a23dc1f0b36fb48082a4c364p4@R3HDM1
3.05e-116FFCP PHASE2:Hg19::chr12:122794425..122794445,-#_182d9112bf483884eef3949c91c986d7p@chr12:122794425..122794445, -
3.05e-116FFCP PHASE1:Hg19::chr12:122794425..122794445,-#_182d9112bf483884eef3949c91c986d7p@chr12:122794425..122794445, -
3.22e-116FFCP PHASE2:Hg19::chr2:10508688..10508712,+#_0cfa2df595bc13549bb5e1ce6009d1c8p8@HPCAL1
3.22e-116FFCP PHASE1:Hg19::chr2:10508688..10508712,+#_0cfa2df595bc13549bb5e1ce6009d1c8p8@HPCAL1
5.63e-116FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_e91670c508f156ca87c98190c01618d5p3@GRIN2B
5.63e-116FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_e91670c508f156ca87c98190c01618d5p3@GRIN2B
8.78e-116FFCP PHASE2:Hg19::chr17:37764312..37764326,-#_3fb007f73d2694ee99b70a5930f80314p2@NEUROD2
8.78e-116FFCP PHASE1:Hg19::chr17:37764312..37764326,-#_3fb007f73d2694ee99b70a5930f80314p2@NEUROD2
5.0e-115FFCP PHASE1:Hg19::chr16:758701..758727,+#_78236344d876ab5966ffbd7930a53524p@chr16:758701..758727, +
5.0e-115FFCP PHASE2:Hg19::chr16:758701..758727,+#_78236344d876ab5966ffbd7930a53524p@chr16:758701..758727, +
9.57e-115FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_abc5fcbda447b4f2e4e08c5ddb64d765p@chr5:80255907..80255942, +
9.57e-115FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_abc5fcbda447b4f2e4e08c5ddb64d765p@chr5:80255907..80255942, +
1.52e-114FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_b20e09edf4472bc26fddd3d1dff0c50fp@chr11:84431459..84431498, -
1.52e-114FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_b20e09edf4472bc26fddd3d1dff0c50fp@chr11:84431459..84431498, -
1.78e-114FFCP PHASE1:Hg19::chr1:177134348..177134360,-#_cdef4cec38217afceeb382186ee7667cp10@ASTN1
1.78e-114FFCP PHASE2:Hg19::chr1:177134348..177134360,-#_cdef4cec38217afceeb382186ee7667cp10@ASTN1
3.85e-114FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_27e7773dfa41b4e714e8821400bbee0cp9@PPP2R2C
3.85e-114FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_27e7773dfa41b4e714e8821400bbee0cp9@PPP2R2C
5.17e-114FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_e4b341d30f14cf4ede0326c9afbfbd6cp@chr17:36757284..36757327, +
5.17e-114FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_e4b341d30f14cf4ede0326c9afbfbd6cp@chr17:36757284..36757327, +
1.21e-113FFCP PHASE2:Hg19::chr1:50575292..50575326,+#_73f54ecfc3c55c822b0dbb9662e43080p8@ELAVL4
1.21e-113FFCP PHASE1:Hg19::chr1:50575292..50575326,+#_73f54ecfc3c55c822b0dbb9662e43080p8@ELAVL4
1.49e-113FFCP PHASE2:Hg19::chr10:14372834..14372846,-#_64234fb81c997772b4fdf7fc20b06f4ep12@FRMD4A
1.49e-113FFCP PHASE1:Hg19::chr10:14372834..14372846,-#_64234fb81c997772b4fdf7fc20b06f4ep12@FRMD4A
2.98e-113FFCP PHASE1:Hg19::chr6:53976259..53976270,+#_f156722c1dc87c24455706105b89ad6fp5@MLIP
2.98e-113FFCP PHASE2:Hg19::chr6:53976259..53976270,+#_f156722c1dc87c24455706105b89ad6fp5@MLIP
3.32e-113FFCP PHASE2:Hg19::chr5:56910048..56910074,+#_85ae4ea7e821c1df19c6b4136ed5febcp1@ENST00000509844
3.32e-113FFCP PHASE1:Hg19::chr5:56910048..56910074,+#_85ae4ea7e821c1df19c6b4136ed5febcp1@ENST00000509844
8.18e-113FFCP PHASE2:Hg19::chr4:176812842..176812866,-#_c3c57837823562e8fe504d9ae6407dd2p14@GPM6A
8.18e-113FFCP PHASE1:Hg19::chr4:176812842..176812866,-#_c3c57837823562e8fe504d9ae6407dd2p14@GPM6A
9.32e-113FFCP PHASE2:Hg19::chr5:63256975..63257005,-#_ae0e8627b778633c050a83d317737d40p1@HTR1A
9.32e-113FFCP PHASE1:Hg19::chr5:63256975..63257005,-#_ae0e8627b778633c050a83d317737d40p1@HTR1A
1.04e-112FFCP PHASE1:Hg19::chr11:133280516..133280530,-#_5dcd0fa8eebaca15a06256df968fa3cap@chr11:133280516..133280530, -
1.04e-112FFCP PHASE2:Hg19::chr11:133280516..133280530,-#_5dcd0fa8eebaca15a06256df968fa3cap@chr11:133280516..133280530, -

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