UBERON:0007245
From FANTOM5_SSTAR
| Name: | nuclear complex of neuraxis | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA]" [FMA:84059, FMA:FMA] | ||
| Xrefs: |
| ||
| Comments: | todo - move existing complex classes currently under nucleus to be under this class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002020(gray matter) |
|---|
Children
| is a: | UBERON:0002420 (basal ganglion) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007245 (nuclear complex of neuraxis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.82e-133 | FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_c9c920738104c9613de316324799f960 | p22@GNAL |
| 1.82e-133 | FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_c9c920738104c9613de316324799f960 | p22@GNAL |
| 1.42e-130 | FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_1cb7be99f5dac7f5f6b33f47f4ab2740 | p@chr15:40582949..40582989, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_1cb7be99f5dac7f5f6b33f47f4ab2740 | p@chr15:40582949..40582989, + |
| 1.21e-118 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_2dfab0255fa3127d99026f9f93c1fc79 | p28@ARPP21 |
| 1.21e-118 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_2dfab0255fa3127d99026f9f93c1fc79 | p28@ARPP21 |
| 3.02e-112 | FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_e715a9b58f6a5ce6085b4ecf1165724e | p@chr13:98995904..98995913, + |
| 3.02e-112 | FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_e715a9b58f6a5ce6085b4ecf1165724e | p@chr13:98995904..98995913, + |
| 3.66e-112 | FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_edd070f923962b546b9c7a49c3fd3a3d | p@chr11:80886203..80886231, + |
| 3.66e-112 | FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_edd070f923962b546b9c7a49c3fd3a3d | p@chr11:80886203..80886231, + |
| 6.51e-112 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_1deee4bac5f07be1f5771f3efc862598 | p@chr2:7112752..7112770, + |
| 6.51e-112 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_1deee4bac5f07be1f5771f3efc862598 | p@chr2:7112752..7112770, + |
| 7.88e-112 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_43b115f9424f37d0c15d523c687a770c | p3@ENST00000413244 |
| 7.88e-112 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_43b115f9424f37d0c15d523c687a770c | p3@ENST00000413244 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr17:19390211..19390223, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr19:719510..719520,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr19:719510..719520,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_d67600ef3cbb1cf327a65d5c6c9703e3 | p@chr17:19390211..19390223, + |
| 4.01e-107 | FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_a091a40a6b5fbb12e537bb36716e340d | p17@GNAL |
| 4.01e-107 | FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_a091a40a6b5fbb12e537bb36716e340d | p17@GNAL |
| 1.41e-106 | FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_8a828bd54c15c819326ecb1359641c9e | p@chr21:43917191..43917207, - |
| 1.41e-106 | FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_8a828bd54c15c819326ecb1359641c9e | p@chr21:43917191..43917207, - |
| 3.33e-98 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_cfe7da746f11c3932fb968d14fa69e44 | p10@PTPN5 |
| 3.33e-98 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_cfe7da746f11c3932fb968d14fa69e44 | p10@PTPN5 |
| 1.43e-97 | FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_66acfd33bf999d0dbd160a469ce76273 | p@chr13:98995923..98995941, + |
| 1.43e-97 | FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_66acfd33bf999d0dbd160a469ce76273 | p@chr13:98995923..98995941, + |
| 4.08e-91 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_4cd65b9c8872391e3e2af2e7e90a3ca9 | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_4cd65b9c8872391e3e2af2e7e90a3ca9 | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_4cd65b9c8872391e3e2af2e7e90a3ca9 | p@chr10:97261901..97261919, - |
| 4.08e-91 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_4cd65b9c8872391e3e2af2e7e90a3ca9 | p@chr10:97261901..97261919, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_fce11f2d95cd26fa56bcbf2bcdea5181 | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p8@ANO3 |
| 4.91e-91 | FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_fce11f2d95cd26fa56bcbf2bcdea5181 | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_fce11f2d95cd26fa56bcbf2bcdea5181 | p8@ANO3 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_bd104f402bffa283bef3d35477432fa8 | p7@PTPN5 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_bd104f402bffa283bef3d35477432fa8 | p1@GPR52 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_bd104f402bffa283bef3d35477432fa8 | p1@GPR52 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_bd104f402bffa283bef3d35477432fa8 | p7@PTPN5 |
| 2.51e-89 | FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_ad00f27301997145439589a9276084e6 | p5@GPR88 |
| 2.51e-89 | FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_ad00f27301997145439589a9276084e6 | p5@GPR88 |
| 2.86e-89 | FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_1195d105bcd57588a6d06ac8a6027ecd | p14@PPP1CA |
| 2.86e-89 | FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_1195d105bcd57588a6d06ac8a6027ecd | p14@PPP1CA |
| 4.81e-88 | FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_d4b956afa2b305e294a90cc6e28d525f | p3@PTPN5 |
| 4.81e-88 | FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_d4b956afa2b305e294a90cc6e28d525f | p3@PTPN5 |
| 1.33e-87 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_6809b09fac5d44a76235b40100946867 | p@chr17:19390234..19390251, + |
| 1.33e-87 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_6809b09fac5d44a76235b40100946867 | p@chr17:19390234..19390251, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_878ea35dd850fb4cd6d092c749517be6 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_878ea35dd850fb4cd6d092c749517be6 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_878ea35dd850fb4cd6d092c749517be6 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_878ea35dd850fb4cd6d092c749517be6 | p20@WIPF3 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_878ea35dd850fb4cd6d092c749517be6 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_878ea35dd850fb4cd6d092c749517be6 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_878ea35dd850fb4cd6d092c749517be6 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_878ea35dd850fb4cd6d092c749517be6 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_878ea35dd850fb4cd6d092c749517be6 | p20@WIPF3 |
| 1.79e-87 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_1c38bcdee76174d8004c0ff3b71cd440 | p5@ANO3 |
| 1.79e-87 | FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_1c38bcdee76174d8004c0ff3b71cd440 | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_1c38bcdee76174d8004c0ff3b71cd440 | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_1c38bcdee76174d8004c0ff3b71cd440 | p5@ANO3 |
| 2.08e-87 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_7f194faa92dfe8b4bf2999faea1f2333 | p@chr3:16851273..16851310, + |
| 2.08e-87 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_7f194faa92dfe8b4bf2999faea1f2333 | p@chr3:16851273..16851310, + |
| 2.42e-87 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_bf776f511009264df0b9247a048d7bbd | p@chr7:67899920..67899958, - |
| 2.42e-87 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_bf776f511009264df0b9247a048d7bbd | p@chr7:67899920..67899958, - |
| 2.8e-87 | FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_d70281fedb2eb6eb7972079a52b84982 | p@chr9:95569585..95569596, + |
| 2.8e-87 | FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_d70281fedb2eb6eb7972079a52b84982 | p@chr9:95569585..95569596, + |
| 4.39e-83 | FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_0b1bb910df561a4fe432058b7f9476b5 | p12@GNAL |
| 4.39e-83 | FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_0b1bb910df561a4fe432058b7f9476b5 | p12@GNAL |
| 3.09e-79 | FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_b788f3df14805524e21605be17468fbd | p5@BTBD10 |
| 3.09e-79 | FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_b788f3df14805524e21605be17468fbd | p5@BTBD10 |
| 5.29e-79 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_58c35be378ac70a49b30711520934a9e | p@chr6:166076645..166076657, - |
| 5.29e-79 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_58c35be378ac70a49b30711520934a9e | p@chr6:166076645..166076657, - |
| 6.06e-79 | FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_4a4c11c0badbb25b765e60b58920c516 | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_4a4c11c0badbb25b765e60b58920c516 | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_4a4c11c0badbb25b765e60b58920c516 | p6@PTPN5 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_4a4c11c0badbb25b765e60b58920c516 | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_4a4c11c0badbb25b765e60b58920c516 | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_4a4c11c0badbb25b765e60b58920c516 | p6@PTPN5 |
| 6.93e-79 | FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_8f8ad4add7fd4b7c1b5b0fa88b7f7afc | p@chr19:19640188..19640201, + |
| 6.93e-79 | FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_8f8ad4add7fd4b7c1b5b0fa88b7f7afc | p@chr19:19640188..19640201, + |
