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|full_id=C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS
|full_id=C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS
|id=C102
|id=C102
|ontology_enrichment_celltype=
|ontology_enrichment_disease=DOID:0050687!1.35e-20!143;DOID:305!2.39e-17!106;DOID:14566!4.35e-17!239;DOID:162!2.73e-16!235
|ontology_enrichment_uberon=UBERON:0000073!1.30e-27!94;UBERON:0001016!1.30e-27!94;UBERON:0001017!1.39e-24!82;UBERON:0005743!3.56e-24!86;UBERON:0001049!8.19e-21!57;UBERON:0005068!8.19e-21!57;UBERON:0006241!8.19e-21!57;UBERON:0007135!8.19e-21!57;UBERON:0000955!1.31e-19!69;UBERON:0006238!1.31e-19!69;UBERON:0002780!4.04e-19!41;UBERON:0001890!4.04e-19!41;UBERON:0006240!4.04e-19!41;UBERON:0003080!6.33e-18!42;UBERON:0002616!8.53e-18!59;UBERON:0002020!7.57e-17!34;UBERON:0003528!7.57e-17!34;UBERON:0001869!1.16e-16!32;UBERON:0001893!1.79e-16!34;UBERON:0000924!4.72e-16!173;UBERON:0006601!4.72e-16!173;UBERON:0002346!4.74e-16!90;UBERON:0002791!6.88e-16!33;UBERON:0004121!4.17e-15!169;UBERON:0003075!4.93e-15!86;UBERON:0007284!4.93e-15!86;UBERON:0000956!2.26e-14!25;UBERON:0000203!2.26e-14!25;UBERON:0002619!2.39e-13!22;UBERON:0001950!1.95e-12!20;UBERON:0003056!2.87e-12!61;UBERON:0000153!4.22e-10!129;UBERON:0007811!4.22e-10!129;UBERON:0000033!4.33e-10!123;UBERON:0007023!5.17e-09!115;UBERON:0000064!1.14e-08!219;UBERON:0000475!5.23e-07!365
}}
}}

Revision as of 14:05, 21 May 2012


Full id: C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS



Phase1 CAGE Peaks

Hg19::chr10:127350469..127350475,-p@chr10:127350469..127350475
-
Hg19::chr10:127350497..127350505,-p@chr10:127350497..127350505
-
Hg19::chr11:133821367..133821390,-p@chr11:133821367..133821390
-
Hg19::chr11:68450506..68450518,+p@chr11:68450506..68450518
+
Hg19::chr11:68451165..68451175,+p4@GAL
Hg19::chr11:68451232..68451268,+p5@GAL
Hg19::chr11:68452002..68452019,+p1@GAL
Hg19::chr11:71952309..71952319,-p2@PHOX2A
Hg19::chr11:71955016..71955024,-p7@PHOX2A
Hg19::chr12:122711996..122712008,-p5@DIABLO
Hg19::chr12:122712038..122712049,-p8@DIABLO
Hg19::chr12:49688923..49688936,+p1@PRPH
Hg19::chr14:104690772..104690782,+p@chr14:104690772..104690782
+
Hg19::chr14:104760121..104760131,+p@chr14:104760121..104760131
+
Hg19::chr14:104760198..104760243,+p@chr14:104760198..104760243
+
Hg19::chr14:104760559..104760564,+p@chr14:104760559..104760564
+
Hg19::chr14:104760576..104760581,+p@chr14:104760576..104760581
+
Hg19::chr14:104760588..104760595,+p@chr14:104760588..104760595
+
Hg19::chr14:104760605..104760614,+p@chr14:104760605..104760614
+
Hg19::chr15:74495513..74495544,-p8@STRA6
Hg19::chr16:57980377..57980387,-p@chr16:57980377..57980387
-
Hg19::chr16:57980404..57980415,-p@chr16:57980404..57980415
-
Hg19::chr16:57980416..57980425,-p@chr16:57980416..57980425
-
Hg19::chr16:57980435..57980443,-p@chr16:57980435..57980443
-
Hg19::chr16:57980444..57980463,-p@chr16:57980444..57980463
-
Hg19::chr17:42101631..42101637,-p@chr17:42101631..42101637
-
Hg19::chr17:74540218..74540227,+p12@PRCD
Hg19::chr17:74540293..74540300,+p15@PRCD
Hg19::chr19:4279647..4279659,+p9@SHD
Hg19::chr19:4279661..4279707,+p3@SHD
Hg19::chr19:48876376..48876383,+p@chr19:48876376..48876383
+
Hg19::chr19:48876384..48876391,+p@chr19:48876384..48876391
+
Hg19::chr19:48876418..48876427,+p@chr19:48876418..48876427
+
Hg19::chr19:48876547..48876593,+p@chr19:48876547..48876593
+
Hg19::chr19:48876664..48876672,+p@chr19:48876664..48876672
+
Hg19::chr19:48876673..48876694,+p@chr19:48876673..48876694
+
Hg19::chr19:48876699..48876707,+p@chr19:48876699..48876707
+
Hg19::chr19:48876709..48876718,+p@chr19:48876709..48876718
+
Hg19::chr1:151688655..151688667,-p14@CELF3
Hg19::chr1:151688674..151688683,-p22@CELF3
Hg19::chr1:156626643..156626652,+p14@BCAN
Hg19::chr1:205325698..205325721,-p5@KLHDC8A
Hg19::chr1:207915129..207915176,+p@chr1:207915129..207915176
+
Hg19::chr1:235813246..235813266,-p7@GNG4
Hg19::chr1:245751682..245751686,-p@chr1:245751682..245751686
-
Hg19::chr1:50569575..50569586,+p11@ELAVL4
Hg19::chr21:46690262..46690294,-p7@POFUT2
Hg19::chr22:48962342..48962367,-p@chr22:48962342..48962367
-
Hg19::chr2:16040301..16040302,-p@chr2:16040301..16040302
-
Hg19::chr2:16081362..16081379,-p4@MYCNOS
Hg19::chr2:20691929..20691932,-p@chr2:20691929..20691932
-
Hg19::chr2:20691964..20691969,-p@chr2:20691964..20691969
-
Hg19::chr2:27651478..27651507,+p1@NRBP1
Hg19::chr2:27651519..27651539,+p2@NRBP1
Hg19::chr2:27712583..27712688,-p1@IFT172
Hg19::chr2:27805866..27805879,+p2@ZNF512
Hg19::chr2:27805880..27805967,+p1@ZNF512
Hg19::chr2:27805971..27805981,+p3@ZNF512
Hg19::chr2:27851885..27851930,+p1@GPN1
Hg19::chr2:27884081..27884103,+p@chr2:27884081..27884103
+
Hg19::chr2:27886228..27886239,-p6@SUPT7L
Hg19::chr2:27886258..27886282,-p3@SUPT7L
Hg19::chr2:27886408..27886419,-p4@SUPT7L
Hg19::chr2:27886420..27886431,-p7@SUPT7L
Hg19::chr2:27886432..27886452,-p2@SUPT7L
Hg19::chr2:27886460..27886511,-p1@SUPT7L
Hg19::chr2:27886747..27886783,+p1@SLC4A1AP
Hg19::chr2:27938593..27938615,-p1@ENST00000379677
p1@uc002rll.1
Hg19::chr2:27994567..27994641,+p1@MRPL33
Hg19::chr2:28113583..28113684,+p1@BRE
Hg19::chr2:29439699..29439702,-p@chr2:29439699..29439702
-
Hg19::chr2:29439775..29439786,-p@chr2:29439775..29439786
-
Hg19::chr2:29439892..29439900,-p@chr2:29439892..29439900
-
Hg19::chr2:29439948..29439958,-p@chr2:29439948..29439958
-
Hg19::chr2:29439959..29439970,-p@chr2:29439959..29439970
-
Hg19::chr2:29440063..29440070,-p@chr2:29440063..29440070
-
Hg19::chr2:29440093..29440103,-p@chr2:29440093..29440103
-
Hg19::chr2:29440116..29440123,-p@chr2:29440116..29440123
-
Hg19::chr2:29440133..29440140,-p@chr2:29440133..29440140
-
Hg19::chr2:29440175..29440180,-p@chr2:29440175..29440180
-
Hg19::chr2:29440253..29440264,-p@chr2:29440253..29440264
-
Hg19::chr2:29440474..29440512,-p@chr2:29440474..29440512
-
Hg19::chr2:29450467..29450495,-p@chr2:29450467..29450495
-
Hg19::chr2:29484252..29484254,-p@chr2:29484252..29484254
-
Hg19::chr2:29519868..29519887,-p@chr2:29519868..29519887
-
Hg19::chr2:29576587..29576590,-p@chr2:29576587..29576590
-
Hg19::chr2:29626570..29626576,-p@chr2:29626570..29626576
-
Hg19::chr2:29645795..29645797,+p@chr2:29645795..29645797
+
Hg19::chr2:29650381..29650398,-p@chr2:29650381..29650398
-
Hg19::chr2:29653880..29653881,+p@chr2:29653880..29653881
+
Hg19::chr2:29655619..29655623,+p@chr2:29655619..29655623
+
Hg19::chr2:29658492..29658495,-p@chr2:29658492..29658495
-
Hg19::chr2:29703653..29703657,-p@chr2:29703653..29703657
-
Hg19::chr2:29706034..29706038,-p@chr2:29706034..29706038
-
Hg19::chr2:29727599..29727607,-p@chr2:29727599..29727607
-
Hg19::chr2:29728669..29728672,-p@chr2:29728669..29728672
-
Hg19::chr2:29731597..29731601,-p@chr2:29731597..29731601
-
Hg19::chr2:29747873..29747882,-p@chr2:29747873..29747882
-
Hg19::chr2:29747891..29747899,-p@chr2:29747891..29747899
-
Hg19::chr2:29747901..29747910,-p@chr2:29747901..29747910
-
Hg19::chr2:29747945..29747955,-p@chr2:29747945..29747955
-
Hg19::chr2:29747987..29747993,-p@chr2:29747987..29747993
-
Hg19::chr2:29748214..29748225,-p@chr2:29748214..29748225
-
Hg19::chr2:29796921..29796922,-p@chr2:29796921..29796922
-
Hg19::chr2:29822049..29822052,-p@chr2:29822049..29822052
-
Hg19::chr2:29836771..29836815,-p@chr2:29836771..29836815
-
Hg19::chr2:29863817..29863820,-p@chr2:29863817..29863820
-
Hg19::chr2:29891260..29891294,-p@chr2:29891260..29891294
-
Hg19::chr2:29892736..29892737,-p@chr2:29892736..29892737
-
Hg19::chr2:29894070..29894081,-p@chr2:29894070..29894081
-
Hg19::chr2:29894082..29894092,-p@chr2:29894082..29894092
-
Hg19::chr2:29902123..29902129,-p@chr2:29902123..29902129
-
Hg19::chr2:29902520..29902529,-p@chr2:29902520..29902529
-
Hg19::chr2:29902609..29902616,-p@chr2:29902609..29902616
-
Hg19::chr2:30106068..30106073,-p@chr2:30106068..30106073
-
Hg19::chr2:30106093..30106097,-p@chr2:30106093..30106097
-
Hg19::chr2:30106158..30106162,-p@chr2:30106158..30106162
-
Hg19::chr2:30128567..30128583,-p@chr2:30128567..30128583
-
Hg19::chr2:30130900..30130921,-p@chr2:30130900..30130921
-
Hg19::chr2:30132841..30132846,-p@chr2:30132841..30132846
-
Hg19::chr2:30133779..30133783,-p@chr2:30133779..30133783
-
Hg19::chr2:30142997..30143009,-p@chr2:30142997..30143009
-
Hg19::chr2:30143103..30143109,-p22@ALK
Hg19::chr2:30143599..30143606,-p15@ALK
Hg19::chr2:30143685..30143694,-p11@ALK
Hg19::chr2:30143749..30143756,-p16@ALK
Hg19::chr2:30143760..30143777,-p5@ALK
Hg19::chr2:30143805..30143814,-p6@ALK
Hg19::chr2:30143819..30143830,-p8@ALK
Hg19::chr2:30143841..30143861,-p4@ALK
Hg19::chr2:30144040..30144047,-p19@ALK
Hg19::chr2:30144102..30144111,-p9@ALK
Hg19::chr2:30144125..30144135,-p12@ALK
Hg19::chr2:30144214..30144224,-p14@ALK
Hg19::chr2:30144229..30144240,-p10@ALK
Hg19::chr2:30144445..30144457,-p1@ALK
Hg19::chr2:30144471..30144482,-p2@ALK
Hg19::chr2:30670077..30670125,+p1@LCLAT1
Hg19::chr2:30670127..30670186,+p2@LCLAT1
Hg19::chr2:30670193..30670200,+p5@LCLAT1
Hg19::chr2:30670209..30670220,+p4@LCLAT1
Hg19::chr2:30762138..30762142,+p@chr2:30762138..30762142
+
Hg19::chr2:30863199..30863211,+p@chr2:30863199..30863211
+
Hg19::chr2:30863696..30863716,+p@chr2:30863696..30863716
+
Hg19::chr2:30864128..30864141,+p8@LCLAT1
Hg19::chr2:30864391..30864426,+p6@LCLAT1
Hg19::chr2:30864461..30864472,+p11@LCLAT1
Hg19::chr2:30864778..30864794,+p@chr2:30864778..30864794
+
Hg19::chr2:30864827..30864835,+p@chr2:30864827..30864835
+
Hg19::chr2:30864920..30864931,+p@chr2:30864920..30864931
+
Hg19::chr2:30865194..30865203,+p9@LCLAT1
Hg19::chr2:30865283..30865293,+p3@LCLAT1
Hg19::chr2:30865408..30865436,+p7@LCLAT1
Hg19::chr3:132975822..132975848,-p@chr3:132975822..132975848
-
Hg19::chr3:132975886..132975894,-p1@ENST00000504993
Hg19::chr3:28617116..28617136,+p@chr3:28617116..28617136
+
Hg19::chr3:33998836..33998839,+p@chr3:33998836..33998839
+
Hg19::chr3:97448267..97448299,-p@chr3:97448267..97448299
-
Hg19::chr3:97455832..97455841,-p@chr3:97455832..97455841
-
Hg19::chr3:97483572..97483644,+p1@ARL6
Hg19::chr3:97483652..97483663,+p4@ARL6
Hg19::chr3:97483675..97483686,+p5@ARL6
Hg19::chr4:10057464..10057469,+p@chr4:10057464..10057469
+
Hg19::chr4:175204955..175204970,+p9@CEP44
Hg19::chr4:42400017..42400037,+p4@SHISA3
Hg19::chr4:48485147..48485178,+p6@SLC10A4
Hg19::chr5:16180622..16180633,-p@chr5:16180622..16180633
-
Hg19::chr5:16180836..16180838,-p6@MARCH11
Hg19::chr5:16180906..16180918,-p3@MARCH11
Hg19::chr5:16180927..16180934,-p7@MARCH11
Hg19::chr5:168272120..168272136,-p12@SLIT3
Hg19::chr5:168310338..168310348,-p@chr5:168310338..168310348
-
Hg19::chr5:168310353..168310356,-p@chr5:168310353..168310356
-
Hg19::chr5:168310490..168310493,-p@chr5:168310490..168310493
-
Hg19::chr5:168310509..168310521,-p@chr5:168310509..168310521
-
Hg19::chr5:168310523..168310542,-p@chr5:168310523..168310542
-
Hg19::chr6:119524135..119524144,+p@chr6:119524135..119524144
+
Hg19::chr6:119524165..119524187,+p@chr6:119524165..119524187
+
Hg19::chr6:123318989..123318999,+p@chr6:123318989..123318999
+
Hg19::chr6:159190463..159190467,-p@chr6:159190463..159190467
-
Hg19::chr6:44238930..44238942,+p4@TMEM151B
Hg19::chr6:44355325..44355340,+p4@CDC5L
Hg19::chr6:44355992..44356000,+p@chr6:44355992..44356000
+
Hg19::chr6:44356761..44356774,+p@chr6:44356761..44356774
+
Hg19::chr9:94955376..94955381,+p@chr9:94955376..94955381
+
Hg19::chr9:97372339..97372361,-p@chr9:97372339..97372361
-
Hg19::chrX:133847905..133847915,-p@chrX:133847905..133847915
-
Hg19::chrX:133847967..133848002,-p@chrX:133847967..133848002
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.30e-2794
nervous system1.30e-2794
central nervous system1.39e-2482
neural tube8.19e-2157
neural rod8.19e-2157
future spinal cord8.19e-2157
neural keel8.19e-2157
brain1.31e-1969
future brain1.31e-1969
regional part of forebrain4.04e-1941
forebrain4.04e-1941
future forebrain4.04e-1941
anterior neural tube6.33e-1842
regional part of brain8.53e-1859
gray matter7.57e-1734
brain grey matter7.57e-1734
cerebral hemisphere1.16e-1632
telencephalon1.79e-1634
ectoderm4.72e-16173
presumptive ectoderm4.72e-16173
neurectoderm4.74e-1690
regional part of telencephalon6.88e-1633
ectoderm-derived structure4.17e-15169
neural plate4.93e-1586
presumptive neural plate4.93e-1586
cerebral cortex2.26e-1425
pallium2.26e-1425
regional part of cerebral cortex2.39e-1322
neocortex1.95e-1220
pre-chordal neural plate2.87e-1261
anterior region of body4.22e-10129
craniocervical region4.22e-10129
head4.33e-10123
adult organism5.17e-09115
organ part1.14e-08219
organism subdivision5.23e-07365
Disease
Ontology termp-valuen
cell type cancer1.35e-20143
carcinoma2.39e-17106
disease of cellular proliferation4.35e-17239
cancer2.73e-16235


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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