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Revision as of 17:14, 15 June 2012

Name:neocortex
Definition:"The neocortex is a part of the brain of mammals. It is the outer layer of the cerebral hemispheres, and made up of six layers, labelled I to VI (with VI being the innermost and I being the outermost). The neocortex is part of the cerebral cortex (along with the archicortex and paleocortex, which are cortical parts of the limbic system). It is involved in higher functions such as sensory perception, generation of motor commands, spatial reasoning, conscious thought and, in humans, language. Other names for the neocortex include neopallium and isocortex ('equal rind'). [WP,unvetted]." [Wikipedia:Neocortex]
Xrefs:
links:

ABA:Isocortex
BTO:0000920
EHDAA2:0004662
FMA:62429
GAID:677
MA:0002754
MESH:A.08.186.211.730.885.213.420

NIF_GrossAnatomy:birnlex_2547
Synonyms: "cerebral neocortex" EXACT []
"homogenetic cortex" EXACT []
"homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547]
"isocortex" EXACT []
"isocortex (sensu lato)" EXACT [FMA:62429]
"neopallial cortex" EXACT []
"neopallium" EXACT []
"nonolfactory cortex" RELATED [BTO:0000920]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62429-MA_0002754
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002619(regional part of cerebral cortex)
part_of:UBERON:0000956(cerebral cortex)



Children

part of:UBERON:0001871 (temporal lobe),UBERON:0001872 (parietal lobe),UBERON:0002021 (occipital lobe),UBERON:0002022 (insula),UBERON:0016529 (cortex of cerebral lobe)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001950 (neocortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.54e-133FFCP PHASE1:Hg19::chr9:10612907..10612918,-#_4ce2700b2884010ef8e030f8104c459dp17@PTPRD
1.54e-133FFCP PHASE2:Hg19::chr9:10612907..10612918,-#_4ce2700b2884010ef8e030f8104c459dp17@PTPRD
5.37e-133FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_7737c0c74c82cba5a0ba523f4c5525e7p@chr10:11047712..11047726, +
5.37e-133FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_7737c0c74c82cba5a0ba523f4c5525e7p@chr10:11047712..11047726, +
2.3e-128FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_98af7e994acd556db681330e00002a41p1@ENST00000518631
2.3e-128FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_98af7e994acd556db681330e00002a41p1@ENST00000518631
5.08e-127FFCP PHASE1:Hg19::chr17:37764312..37764326,-#_645a867f2c8c10c10291841ddf2b0a07p2@NEUROD2
5.08e-127FFCP PHASE2:Hg19::chr17:37764312..37764326,-#_645a867f2c8c10c10291841ddf2b0a07p2@NEUROD2
3.44e-124FFCP PHASE1:Hg19::chr10:11046599..11046616,+#_d0ada408d12017b1b56771c4793c9c97p@chr10:11046599..11046616, +
3.44e-124FFCP PHASE2:Hg19::chr10:11046599..11046616,+#_d0ada408d12017b1b56771c4793c9c97p@chr10:11046599..11046616, +
6.45e-123FFCP PHASE2:Hg19::chr2:76412139..76412163,+#_368f78e96a73f8cb1d4c88778c22def7p@chr2:76412139..76412163, +
6.45e-123FFCP PHASE1:Hg19::chr2:76412139..76412163,+#_368f78e96a73f8cb1d4c88778c22def7p@chr2:76412139..76412163, +
7.02e-123FFCP PHASE1:Hg19::chr14:87928470..87928490,-#_f49aff18ced8904d909ee02bcbb0c54cp@chr14:87928470..87928490, -
7.02e-123FFCP PHASE2:Hg19::chr14:87928470..87928490,-#_f49aff18ced8904d909ee02bcbb0c54cp@chr14:87928470..87928490, -
3.88e-122FFCP PHASE2:Hg19::chr6:100441869..100441892,-#_59869c5cc262564cec9865c838d6a42bp3@MCHR2
3.88e-122FFCP PHASE1:Hg19::chr6:100441869..100441892,-#_59869c5cc262564cec9865c838d6a42bp3@MCHR2
4.86e-122FFCP PHASE1:Hg19::chrX:9881014..9881038,+#_d421e6f7cb78ee31a7e64a1b1f810239p12@SHROOM2
4.86e-122FFCP PHASE2:Hg19::chrX:9881014..9881038,+#_d421e6f7cb78ee31a7e64a1b1f810239p12@SHROOM2
6.56e-122FFCP PHASE2:Hg19::chr5:149618295..149618344,-#_0c4d044a00859e16ea78c5d7c247fa42p@chr5:149618295..149618344, -
6.56e-122FFCP PHASE1:Hg19::chr5:149618295..149618344,-#_0c4d044a00859e16ea78c5d7c247fa42p@chr5:149618295..149618344, -
2.63e-120FFCP PHASE1:Hg19::chr18:70305745..70305761,-#_38352d67f092f83660d6bc4735c8e16bp@chr18:70305745..70305761, -
2.63e-120FFCP PHASE2:Hg19::chr18:70305745..70305761,-#_38352d67f092f83660d6bc4735c8e16bp@chr18:70305745..70305761, -
6.11e-120FFCP PHASE1:Hg19::chr22:43821065..43821115,+#_4eecb2841a54417da568ee78e6f02009p4@MPPED1
6.11e-120FFCP PHASE1:Hg19::chr2:162273151..162273162,+#_4eecb2841a54417da568ee78e6f02009p9@TBR1
6.11e-120FFCP PHASE2:Hg19::chr2:162273151..162273162,+#_4eecb2841a54417da568ee78e6f02009p9@TBR1
6.11e-120FFCP PHASE2:Hg19::chr22:43821065..43821115,+#_4eecb2841a54417da568ee78e6f02009p4@MPPED1
6.52e-120FFCP PHASE2:Hg19::chr18:70305621..70305634,-#_66ced6f91241a42dc195e2174ddcd61ap@chr18:70305621..70305634, -
6.52e-120FFCP PHASE1:Hg19::chr18:70305621..70305634,-#_66ced6f91241a42dc195e2174ddcd61ap@chr18:70305621..70305634, -
1.07e-119FFCP PHASE2:Hg19::chr10:10504250..10504278,+#_cec78f18c21af267562f520a2d34c2d7p@chr10:10504250..10504278, +
1.07e-119FFCP PHASE1:Hg19::chr10:10504250..10504278,+#_cec78f18c21af267562f520a2d34c2d7p@chr10:10504250..10504278, +
2.22e-119FFCP PHASE1:Hg19::chr22:27043182..27043210,+#_b455991c2154b671b542b487890814d6p8@MIAT
2.22e-119FFCP PHASE2:Hg19::chr22:27043182..27043210,+#_b455991c2154b671b542b487890814d6p8@MIAT
5.87e-119FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_621eebcef0887a319e281c7a474c87fdp1@ENST00000511849
5.87e-119FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_621eebcef0887a319e281c7a474c87fdp1@ENST00000511849
6.17e-119FFCP PHASE2:Hg19::chr8:110986427..110986445,-#_76f0e4b89402456df89619d1ea530cd9p4@KCNV1
6.17e-119FFCP PHASE1:Hg19::chr8:110986427..110986445,-#_76f0e4b89402456df89619d1ea530cd9p4@KCNV1
9.01e-119FFCP PHASE2:Hg19::chr2:162273032..162273042,+#_cc6b0d7958465dfbeef3404e4495202ep13@TBR1
9.01e-119FFCP PHASE1:Hg19::chr2:162273032..162273042,+#_cc6b0d7958465dfbeef3404e4495202ep13@TBR1
5.1e-117FFCP PHASE1:Hg19::chr2:136343886..136343897,+#_a6d8ac1497e443b95d26192253119366p4@R3HDM1
5.1e-117FFCP PHASE2:Hg19::chr2:136343886..136343897,+#_a6d8ac1497e443b95d26192253119366p4@R3HDM1
1.38e-116FFCP PHASE1:Hg19::chr3:158991007..158991022,+#_c880abe3969def62145f7cf129d5ef4dp32@SCHIP1, p9@IQCJ-SCHIP1
1.38e-116FFCP PHASE2:Hg19::chr3:158991007..158991022,+#_c880abe3969def62145f7cf129d5ef4dp32@SCHIP1, p9@IQCJ-SCHIP1
2.62e-116FFCP PHASE2:Hg19::chr2:200335983..200335994,-#_b47bd193d850ae5fd3579198c15d4abfp16@SATB2
2.62e-116FFCP PHASE1:Hg19::chr2:200335983..200335994,-#_b47bd193d850ae5fd3579198c15d4abfp16@SATB2
3.03e-116FFCP PHASE2:Hg19::chr2:162273873..162273885,+#_868ccee0438b45145fa7e114fe8d6420p14@TBR1
3.03e-116FFCP PHASE1:Hg19::chr2:162273873..162273885,+#_868ccee0438b45145fa7e114fe8d6420p14@TBR1
5.0e-116FFCP PHASE2:Hg19::chrX:9881045..9881073,+#_6383716fe350eceb4bc4fd746d30590ap7@SHROOM2
5.0e-116FFCP PHASE1:Hg19::chrX:9881045..9881073,+#_6383716fe350eceb4bc4fd746d30590ap7@SHROOM2
8.79e-116FFCP PHASE1:Hg19::chr10:64136084..64136105,+#_9133539d6ad5abd4b649e5250bc9643fp7@ZNF365
8.79e-116FFCP PHASE2:Hg19::chr10:64136084..64136105,+#_9133539d6ad5abd4b649e5250bc9643fp7@ZNF365
1.93e-115FFCP PHASE1:Hg19::chr10:116852602..116852626,+#_e5fdf7675946a6df09885314190c85b1p5@ATRNL1
1.93e-115FFCP PHASE2:Hg19::chr10:116852602..116852626,+#_e5fdf7675946a6df09885314190c85b1p5@ATRNL1
2.73e-115FFCP PHASE2:Hg19::chr10:11047746..11047768,+#_261f9e6aa7da310ffb2b959d860e6f39p@chr10:11047746..11047768, +
2.73e-115FFCP PHASE1:Hg19::chr10:11047746..11047768,+#_261f9e6aa7da310ffb2b959d860e6f39p@chr10:11047746..11047768, +
1.73e-114FFCP PHASE1:Hg19::chr7:54609687..54609702,+#_44d64b99f44a51003b7e0d8d4d1e6c26p10@VSTM2A
1.73e-114FFCP PHASE2:Hg19::chr7:54609687..54609702,+#_44d64b99f44a51003b7e0d8d4d1e6c26p10@VSTM2A
8.96e-114FFCP PHASE2:Hg19::chr6:12718426..12718446,+#_1b5dd3c014aee40c73e9caeadd74eb72p24@PHACTR1
8.96e-114FFCP PHASE1:Hg19::chr6:12718426..12718446,+#_1b5dd3c014aee40c73e9caeadd74eb72p24@PHACTR1
1.06e-113FFCP PHASE2:Hg19::chr11:85430321..85430343,-#_111dae442af9d131fdef9fce82b9e298p9@SYTL2
1.06e-113FFCP PHASE1:Hg19::chr11:85430321..85430343,-#_111dae442af9d131fdef9fce82b9e298p9@SYTL2
1.11e-113FFCP PHASE2:Hg19::chr2:162273254..162273267,+#_fd9d8e1fdc6b381fc53428ac80c5691ap6@TBR1
1.11e-113FFCP PHASE1:Hg19::chr2:162273254..162273267,+#_fd9d8e1fdc6b381fc53428ac80c5691ap6@TBR1
1.18e-113FFCP PHASE2:Hg19::chr8:110987986..110988010,-#_27a61ee301ed62b40e7b021cb4e526ffp1@KCNV1
1.18e-113FFCP PHASE1:Hg19::chr8:110987986..110988010,-#_27a61ee301ed62b40e7b021cb4e526ffp1@KCNV1
3.08e-113FFCP PHASE1:Hg19::chr7:13141045..13141063,+#_b8c2930d8f75c8a41ff9902a1b3a4f54p1@ENST00000443947
3.08e-113FFCP PHASE2:Hg19::chr7:13141045..13141063,+#_b8c2930d8f75c8a41ff9902a1b3a4f54p1@ENST00000443947
1.07e-112FFCP PHASE1:Hg19::chr16:758701..758727,+#_ada32f63754c3e08254ccff04219cc42p@chr16:758701..758727, +
1.07e-112FFCP PHASE2:Hg19::chr16:758701..758727,+#_ada32f63754c3e08254ccff04219cc42p@chr16:758701..758727, +
1.87e-112FFCP PHASE1:Hg19::chr2:162273133..162273143,+#_a7155fb219c48293a8588a3361352da6p8@TBR1
1.87e-112FFCP PHASE2:Hg19::chr2:162273133..162273143,+#_a7155fb219c48293a8588a3361352da6p8@TBR1
1.99e-112FFCP PHASE1:Hg19::chr6:53976259..53976270,+#_72b9f56418a30249c467df11607b1743p5@MLIP
1.99e-112FFCP PHASE2:Hg19::chr6:53976259..53976270,+#_72b9f56418a30249c467df11607b1743p5@MLIP
2.16e-112FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_64c43cc8602c066e19e555d4b3e3d8fbp8@OPCML
2.16e-112FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_64c43cc8602c066e19e555d4b3e3d8fbp8@OPCML
2.55e-112FFCP PHASE1:Hg19::chr5:17404114..17404134,+#_570662108eea162c262b6e1b6664f31ep1@ENST00000508677
2.55e-112FFCP PHASE2:Hg19::chr5:17404114..17404134,+#_570662108eea162c262b6e1b6664f31ep1@ENST00000508677
4.14e-112FFCP PHASE2:Hg19::chr14:70546905..70546935,-#_396d736654e6d17c8d86c5cb57d4b8e4p3@SLC8A3
4.14e-112FFCP PHASE1:Hg19::chr14:70546905..70546935,-#_396d736654e6d17c8d86c5cb57d4b8e4p3@SLC8A3
4.7e-112FFCP PHASE1:Hg19::chr10:116850978..116851000,+#_ccf703482ad3d9033205a9b9f3ed2320p@chr10:116850978..116851000, +
4.7e-112FFCP PHASE2:Hg19::chr10:116850978..116851000,+#_ccf703482ad3d9033205a9b9f3ed2320p@chr10:116850978..116851000, +
5.99e-112FFCP PHASE1:Hg19::chr2:79412496..79412517,+#_2518099202bd09150d5cc4e1ee32cfe0p4@CTNNA2
5.99e-112FFCP PHASE2:Hg19::chr2:79412496..79412517,+#_2518099202bd09150d5cc4e1ee32cfe0p4@CTNNA2
9.7e-112FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_31873bf3c479ed9381f643acff31d782p@chr17:36757284..36757327, +
9.7e-112FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_31873bf3c479ed9381f643acff31d782p@chr17:36757284..36757327, +
1.48e-111FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_ef90b8a4a6b04531f7d6130f801b6155p@chr19:54462560..54462571, +
1.48e-111FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_ef90b8a4a6b04531f7d6130f801b6155p@chr19:54462560..54462571, +
5.4e-111FFCP PHASE1:Hg19::chr8:110986918..110986930,-#_a6f7aaecfdea1eca449a337b3e6c1980p3@KCNV1
5.4e-111FFCP PHASE2:Hg19::chr8:110986918..110986930,-#_a6f7aaecfdea1eca449a337b3e6c1980p3@KCNV1
5.79e-111FFCP PHASE2:Hg19::chr6:100442077..100442114,-#_5915b20e856e3b3468f74e91df3c9dbdp1@MCHR2
5.79e-111FFCP PHASE1:Hg19::chr6:100442077..100442114,-#_5915b20e856e3b3468f74e91df3c9dbdp1@MCHR2
7.11e-111FFCP PHASE1:Hg19::chr5:56910048..56910074,+#_a1b37f1f771a099e248158576d379656p1@ENST00000509844
7.11e-111FFCP PHASE2:Hg19::chr5:56910048..56910074,+#_a1b37f1f771a099e248158576d379656p1@ENST00000509844
1.63e-110FFCP PHASE1:Hg19::chr2:136343943..136343952,+#_c049409f7b958a6de50894fe074777c4p3@R3HDM1
1.63e-110FFCP PHASE2:Hg19::chr2:136343943..136343952,+#_c049409f7b958a6de50894fe074777c4p3@R3HDM1
1.7e-110FFCP PHASE1:Hg19::chr11:88799138..88799158,-#_b648e226ec59c0002145450bd7cdc828p2@GRM5
1.7e-110FFCP PHASE2:Hg19::chr11:88799138..88799158,-#_b648e226ec59c0002145450bd7cdc828p2@GRM5
1.98e-110FFCP PHASE2:Hg19::chr15:31631813..31631825,+#_0a9bf12ea11a95bf56ace6efa3061443p17@KLF13
1.98e-110FFCP PHASE1:Hg19::chr15:31631813..31631825,+#_0a9bf12ea11a95bf56ace6efa3061443p17@KLF13
2.7e-110FFCP PHASE2:Hg19::chr20:24043888..24043912,+#_5bc1402565a8f65f8437f9e5ec1010bfp@chr20:24043888..24043912, +
2.7e-110FFCP PHASE1:Hg19::chr20:24043888..24043912,+#_5bc1402565a8f65f8437f9e5ec1010bfp@chr20:24043888..24043912, +

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