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Revision as of 17:15, 15 June 2012

Name:cardiac atrium
Definition:"Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium]
Xrefs:
links:

AAO:0010246
BTO:0000903
EFO:0000277
EFO:0000314
EHDAA:1265
EMAPA:16688
EV:0100019
FMA:7099
GAID:555
galen:Atrium
MA:0000073
MAT:0000496
MESH:A.07.541.358
ncithesaurus:Cardiac_Atrium
SCTID:261405004
TAO:0000471
VHOG:0000175

ZFA:0000471
Synonyms: "atria" EXACT PLURAL []
"atrial tissue" RELATED [BTO:0000903]
"atrium" EXACT [ZFA:0000471]
"atrium of heart" EXACT []
"Cardiac atria" EXACT PLURAL []
"cardiac atria" EXACT PLURAL []
"heart atrium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7099-MA_0000073
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004151(cardiac chamber)
part_of:UBERON:0000948(heart)



Children

is a:UBERON:0002078 (right cardiac atrium),UBERON:0002079 (left cardiac atrium)
part of:UBERON:0005946 (outflow tract of atrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002081 (cardiac atrium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911dap@chr1:11905799..11905806, -
8.99e-131FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911dap9@NPPA
8.99e-131FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911dap@chr1:11905799..11905806, -
8.99e-131FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911dap9@NPPA
9.38e-99FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p@chr1:11905830..11905839, -
9.38e-99FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p2@MYL7
9.38e-99FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p@chr1:11905830..11905839, -
9.38e-99FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p2@MYL7
1.55e-98FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606p@chr17:79385898..79385905, -
1.55e-98FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606p@chr10:92678409..92678410, -
1.55e-98FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606p10@NPPA
1.55e-98FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606p@chr12:4735761..4735787, -
1.55e-98FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606p@chr1:43676416..43676417, -
1.55e-98FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606p3@MYL7
1.55e-98FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606p10@NPPA
1.55e-98FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606p@chr10:92678409..92678410, -
1.55e-98FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606p@chr1:43676416..43676417, -
1.55e-98FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606p@chr12:4735761..4735787, -
1.55e-98FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606p3@MYL7
1.55e-98FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606p@chr17:79385898..79385905, -
2.56e-98FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837p@chr7:44178491..44178498, -
2.56e-98FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837p@chr7:44178491..44178498, -
4.22e-98FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408p@chr12:114886577..114886589, -
4.22e-98FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408p@chr12:114886577..114886589, -
1.56e-79FFCP PHASE2:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39dp@chr10:92725775..92725780, +
1.56e-79FFCP PHASE1:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39dp@chr10:92725775..92725780, +
3.49e-79FFCP PHASE1:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553p@chr15:86266279..86266292, +
3.49e-79FFCP PHASE2:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553p@chr15:86266279..86266292, +
1.16e-78FFCP PHASE1:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337p@chr2:179585314..179585321, -
1.16e-78FFCP PHASE2:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337p@chr2:179585314..179585321, -
1.45e-66FFCP PHASE1:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6p@chr12:114886372..114886399, -
1.45e-66FFCP PHASE2:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6p@chr12:114886372..114886399, -
2.03e-66FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035fp35@ARHGEF7
2.03e-66FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035fp35@ARHGEF7
2.84e-66FFCP PHASE1:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866p@chr14:23854202..23854211, -
2.84e-66FFCP PHASE2:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866p@chr14:23854202..23854211, -
3.96e-66FFCP PHASE2:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559p10@ITM2A
3.96e-66FFCP PHASE1:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559p10@ITM2A
5.53e-66FFCP PHASE1:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717p147@TTN
5.53e-66FFCP PHASE2:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717p147@TTN
1.51e-57FFCP PHASE2:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47bp@chr1:78408547..78408558, +
1.51e-57FFCP PHASE1:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47bp@chr1:78408547..78408558, +
2.69e-57FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8bp2@NPPA
2.69e-57FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8bp2@NPPA
3.58e-57FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0p3@NPPA
3.58e-57FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0p3@NPPA
4.77e-57FFCP PHASE2:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dcp@chr2:179396338..179396348, -
4.77e-57FFCP PHASE1:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dcp@chr2:179396338..179396348, -
6.36e-57FFCP PHASE2:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321p@chr1:12520398..12520406, +
6.36e-57FFCP PHASE1:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321p@chr1:12520398..12520406, +
8.47e-57FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6ap@chrX:112324334..112324339, -
8.47e-57FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6ap@chrX:112324334..112324339, -
1.88e-50FFCP PHASE1:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779bp@chr1:163112604..163112616, -
1.88e-50FFCP PHASE1:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779bp@chr4:95508126..95508142, +
1.88e-50FFCP PHASE2:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779bp@chr2:179504505..179504514, -
1.88e-50FFCP PHASE2:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779bp@chr1:163112604..163112616, -
1.88e-50FFCP PHASE2:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779bp@chr4:95508126..95508142, +
1.88e-50FFCP PHASE1:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779bp@chr2:179504505..179504514, -
2.74e-50FFCP PHASE2:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03p16@ASNS
2.74e-50FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000509453
2.74e-50FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03p3@MYBPHL
2.74e-50FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907440..11907450, +
2.74e-50FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03p13@CCDC41
2.74e-50FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03p3@LRRC10
2.74e-50FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907408..11907415, +
2.74e-50FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03p@chr2:179656442..179656451, -
2.74e-50FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03p4@ENST00000451579
2.74e-50FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03p4@ENST00000451579
2.74e-50FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03p7@NPPA
2.74e-50FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03p@chr1:11906044..11906050, -
2.74e-50FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03p13@CCDC41
2.74e-50FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03p15@NPPA
2.74e-50FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000451579
2.74e-50FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000451579
2.74e-50FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03p3@MYBPHL
2.74e-50FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907440..11907450, +
2.74e-50FFCP PHASE1:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03p16@ASNS
2.74e-50FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907408..11907415, +
2.74e-50FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03p7@NPPA
2.74e-50FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000509453
2.74e-50FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03p@chr1:11906044..11906050, -
2.74e-50FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03p3@LRRC10
2.74e-50FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03p15@NPPA
2.74e-50FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03p@chr2:179656442..179656451, -
4.0e-50FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr5:123739302..123739319, -
4.0e-50FFCP PHASE1:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992ap30@DBNDD2
4.0e-50FFCP PHASE1:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr14:23863442..23863452, -
4.0e-50FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr5:123739302..123739319, -
4.0e-50FFCP PHASE2:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr14:23863442..23863452, -
4.0e-50FFCP PHASE2:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992ap30@DBNDD2
4.52e-50FFCP PHASE1:Hg19::chr18:28807557..28807562,-#_83f469aaacaa8c3bf98c43e6be636518p@chr18:28807557..28807562, -
4.52e-50FFCP PHASE2:Hg19::chr11:45274102..45274110,-#_83f469aaacaa8c3bf98c43e6be636518p@chr11:45274102..45274110, -
4.52e-50FFCP PHASE2:Hg19::chr8:24530708..24530710,+#_83f469aaacaa8c3bf98c43e6be636518p@chr8:24530708..24530710, +
4.52e-50FFCP PHASE2:Hg19::chr6:104898467..104898469,-#_83f469aaacaa8c3bf98c43e6be636518p@chr6:104898467..104898469, -
4.52e-50FFCP PHASE2:Hg19::chrX:136514398..136514433,-#_83f469aaacaa8c3bf98c43e6be636518p@chrX:136514398..136514433, -
4.52e-50FFCP PHASE1:Hg19::chr18:4003453..4003457,+#_83f469aaacaa8c3bf98c43e6be636518p@chr18:4003453..4003457, +

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