UBERON:0003022: Difference between revisions

Revision as of 17:17, 15 June 2012

lobe parts of cerebral cortex

Xrefs:

Synonyms:

"cerebral cortical segment" RELATED [FMA:68603]
"regional organ part of cerebral cortex" RELATED [FMA:68603]
"segment of cerebral cortex" RELATED [NIF_GrossAnatomy:birnlex_922]

Comments:

check w.r.t regional part of cerebreal cortex

Alt_id:

UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0002619(regional part of cerebral cortex)

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10153-102I9 (hippocampus, adult, donor10252)
10169-103B7 (hippocampus - adult, donor10196)
10363-105F3 (hippocampus, newborn, donor10223)
10374-105G5 (hippocampus, adult, donor10258)
11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
11644-122D6 (Mouse Neurons - hippocampal, donor3)
11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
11721-123D2 (Mouse Neurons - hippocampal, donor1)
11739-123F2 (Mouse Neurons - hippocampal, donor2)

... further results Mouse (Mus musculus)

10153-102I9 (hippocampus, adult, donor10252)
10169-103B7 (hippocampus - adult, donor10196)
10363-105F3 (hippocampus, newborn, donor10223)
10374-105G5 (hippocampus, adult, donor10258)
11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
11644-122D6 (Mouse Neurons - hippocampal, donor3)
11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
11721-123D2 (Mouse Neurons - hippocampal, donor1)
11739-123F2 (Mouse Neurons - hippocampal, donor2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003022 (lobe parts of cerebral cortex), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
5.68e-99	FFCP PHASE2:Hg19::chr2:149881275..149881284,+	p@chr2:149881275..149881284, +
5.68e-99	FFCP PHASE1:Hg19::chr2:149881275..149881284,+	p@chr2:149881275..149881284, +
5.68e-99	FFCP PHASE2:Hg19::chrX:148561320..148561329,-	p@chrX:148561320..148561329, -
5.68e-99	FFCP PHASE1:Hg19::chrX:148561320..148561329,-	p@chrX:148561320..148561329, -
1.55e-98	FFCP PHASE1:Hg19::chr2:187628574..187628585,+	p@chr2:187628574..187628585, +
1.55e-98	FFCP PHASE2:Hg19::chr6:132937900..132937907,-	p@chr6:132937900..132937907, -
1.55e-98	FFCP PHASE1:Hg19::chr6:132937900..132937907,-	p@chr6:132937900..132937907, -
1.55e-98	FFCP PHASE2:Hg19::chrX:110464144..110464149,+	p@chrX:110464144..110464149, +
1.55e-98	FFCP PHASE1:Hg19::chrX:110464144..110464149,+	p@chrX:110464144..110464149, +
1.55e-98	FFCP PHASE2:Hg19::chr2:187628574..187628585,+	p@chr2:187628574..187628585, +
4.22e-98	FFCP PHASE1:Hg19::chr11:79784329..79784335,-	p@chr11:79784329..79784335, -
4.22e-98	FFCP PHASE2:Hg19::chr5:119669127..119669137,-	p4@ENST00000514240
4.22e-98	FFCP PHASE1:Hg19::chr5:119669127..119669137,-	p4@ENST00000514240
4.22e-98	FFCP PHASE2:Hg19::chr3:172166557..172166598,+	p@chr3:172166557..172166598, +
4.22e-98	FFCP PHASE2:Hg19::chr3:71777824..71777833,-	p28@EIF4E3
4.22e-98	FFCP PHASE1:Hg19::chr3:172166557..172166598,+	p@chr3:172166557..172166598, +
4.22e-98	FFCP PHASE2:Hg19::chr11:79784329..79784335,-	p@chr11:79784329..79784335, -
4.22e-98	FFCP PHASE1:Hg19::chr3:71777824..71777833,-	p28@EIF4E3
7.79e-79	FFCP PHASE2:Hg19::chr18:24435190..24435201,-	p@chr18:24435190..24435201, -
7.79e-79	FFCP PHASE1:Hg19::chr18:24435190..24435201,-	p@chr18:24435190..24435201, -
7.41e-67	FFCP PHASE2:Hg19::chr10:125454018..125454027,+	p@chr10:125454018..125454027, +
7.41e-67	FFCP PHASE1:Hg19::chr10:125454018..125454027,+	p@chr10:125454018..125454027, +
1.04e-66	FFCP PHASE2:Hg19::chr3:12225071..12225084,+	p15@SYN2
1.04e-66	FFCP PHASE1:Hg19::chr3:12225071..12225084,+	p15@SYN2
7.73e-66	FFCP PHASE2:Hg19::chrX:72432586..72432597,-	p@chrX:72432586..72432597, -
7.73e-66	FFCP PHASE1:Hg19::chrX:72432586..72432597,-	p@chrX:72432586..72432597, -
2.02e-57	FFCP PHASE1:Hg19::chrX:13789306..13789315,-	p@chrX:13789306..13789315, -
2.02e-57	FFCP PHASE2:Hg19::chr7:130745294..130745303,-	p@chr7:130745294..130745303, -
2.02e-57	FFCP PHASE2:Hg19::chrX:13789306..13789315,-	p@chrX:13789306..13789315, -
2.02e-57	FFCP PHASE1:Hg19::chr7:130745294..130745303,-	p@chr7:130745294..130745303, -
2.69e-57	FFCP PHASE2:Hg19::chr19:49932793..49932820,-	p@chr19:49932793..49932820, -
2.69e-57	FFCP PHASE1:Hg19::chr19:49932793..49932820,-	p@chr19:49932793..49932820, -
3.58e-57	FFCP PHASE2:Hg19::chr5:111964224..111964247,+	p1@ENST00000507565
3.58e-57	FFCP PHASE1:Hg19::chr5:111964224..111964247,+	p1@ENST00000507565
3.58e-57	FFCP PHASE2:Hg19::chr2:79601075..79601083,+	p@chr2:79601075..79601083, +
3.58e-57	FFCP PHASE1:Hg19::chr2:79601075..79601083,+	p@chr2:79601075..79601083, +
4.77e-57	FFCP PHASE2:Hg19::chr7:22158177..22158186,-	p@chr7:22158177..22158186, -
4.77e-57	FFCP PHASE1:Hg19::chr7:22158177..22158186,-	p@chr7:22158177..22158186, -
6.36e-57	FFCP PHASE1:Hg19::chr8:42981738..42981749,+	p4@AK056481
6.36e-57	FFCP PHASE2:Hg19::chr8:42981738..42981749,+	p4@AK056481
8.82e-51	FFCP PHASE2:Hg19::chr5:82155710..82155724,-	p@chr5:82155710..82155724, -
8.82e-51	FFCP PHASE1:Hg19::chr5:82155710..82155724,-	p@chr5:82155710..82155724, -
1.14e-50	FFCP PHASE2:Hg19::chr15:43814895..43814906,+	p35@MAP1A
1.14e-50	FFCP PHASE1:Hg19::chr17:27901500..27901511,-	p25@GIT1
1.14e-50	FFCP PHASE1:Hg19::chr15:43814895..43814906,+	p35@MAP1A
1.14e-50	FFCP PHASE2:Hg19::chr17:27901500..27901511,-	p25@GIT1
2.42e-50	FFCP PHASE1:Hg19::chr13:101712292..101712306,-	p@chr13:101712292..101712306, -
2.42e-50	FFCP PHASE2:Hg19::chr13:101712292..101712306,-	p@chr13:101712292..101712306, -
2.74e-50	FFCP PHASE2:Hg19::chr3:131756632..131756637,-	p11@CPNE4
2.74e-50	FFCP PHASE1:Hg19::chr16:7240507..7240509,+	p@chr16:7240507..7240509, +
2.74e-50	FFCP PHASE2:Hg19::chr3:131756644..131756651,-	p13@CPNE4
2.74e-50	FFCP PHASE1:Hg19::chr3:131756632..131756637,-	p11@CPNE4
2.74e-50	FFCP PHASE2:Hg19::chr19:49932741..49932746,-	p@chr19:49932741..49932746, -
2.74e-50	FFCP PHASE1:Hg19::chr3:131756644..131756651,-	p13@CPNE4
2.74e-50	FFCP PHASE1:Hg19::chr19:49932741..49932746,-	p@chr19:49932741..49932746, -
2.74e-50	FFCP PHASE2:Hg19::chr16:7240507..7240509,+	p@chr16:7240507..7240509, +
3.11e-50	FFCP PHASE1:Hg19::chr11:123502588..123502633,-	p16@SCN3B
3.11e-50	FFCP PHASE2:Hg19::chr11:123502588..123502633,-	p16@SCN3B
4.0e-50	FFCP PHASE2:Hg19::chr3:58552313..58552322,-	p@chr3:58552313..58552322, -
4.0e-50	FFCP PHASE1:Hg19::chr3:58552313..58552322,-	p@chr3:58552313..58552322, -
4.52e-50	FFCP PHASE2:Hg19::chrX:152095682..152095708,-	p@chrX:152095682..152095708, -
4.52e-50	FFCP PHASE1:Hg19::chr21:27651095..27651104,+	p@chr21:27651095..27651104, +
4.52e-50	FFCP PHASE1:Hg19::chrX:152095682..152095708,-	p@chrX:152095682..152095708, -
4.52e-50	FFCP PHASE2:Hg19::chr7:98460933..98460941,-	p19@TMEM130
4.52e-50	FFCP PHASE1:Hg19::chr8:81570615..81570619,-	p@chr8:81570615..81570619, -
4.52e-50	FFCP PHASE2:Hg19::chr20:44330800..44330802,-	p@chr20:44330800..44330802, -
4.52e-50	FFCP PHASE2:Hg19::chr8:26365361..26365372,-	p5@PNMA2
4.52e-50	FFCP PHASE2:Hg19::chr21:27650939..27650945,-	p@chr21:27650939..27650945, -
4.52e-50	FFCP PHASE2:Hg19::chr19:4772190..4772197,+	p@chr19:4772190..4772197, +
4.52e-50	FFCP PHASE1:Hg19::chr20:44330800..44330802,-	p@chr20:44330800..44330802, -
4.52e-50	FFCP PHASE1:Hg19::chr7:98460933..98460941,-	p19@TMEM130
4.52e-50	FFCP PHASE1:Hg19::chr19:4772190..4772197,+	p@chr19:4772190..4772197, +
4.52e-50	FFCP PHASE2:Hg19::chr1:99772065..99772074,+	p13@LPPR4
4.52e-50	FFCP PHASE1:Hg19::chr8:26365361..26365372,-	p5@PNMA2
4.52e-50	FFCP PHASE1:Hg19::chr21:27650939..27650945,-	p@chr21:27650939..27650945, -
4.52e-50	FFCP PHASE2:Hg19::chr18:24433388..24433397,-	p20@AQP4
4.52e-50	FFCP PHASE1:Hg19::chr18:24433388..24433397,-	p20@AQP4
4.52e-50	FFCP PHASE1:Hg19::chr1:99772065..99772074,+	p13@LPPR4
4.52e-50	FFCP PHASE2:Hg19::chr21:27651095..27651104,+	p@chr21:27651095..27651104, +
4.52e-50	FFCP PHASE2:Hg19::chr8:81570615..81570619,-	p@chr8:81570615..81570619, -
5.15e-50	FFCP PHASE1:Hg19::chr14:24037817..24037858,-	p@chr14:24037817..24037858, -
5.15e-50	FFCP PHASE2:Hg19::chr14:24037817..24037858,-	p@chr14:24037817..24037858, -
6.61e-50	FFCP PHASE2:Hg19::chr12:41234328..41234338,+	p@chr12:41234328..41234338, +
6.61e-50	FFCP PHASE1:Hg19::chr12:41234328..41234338,+	p@chr12:41234328..41234338, +
3.19e-45	FFCP PHASE1:Hg19::chr12:79843202..79843213,+	p@chr12:79843202..79843213, +
3.19e-45	FFCP PHASE2:Hg19::chr12:79843202..79843213,+	p@chr12:79843202..79843213, +
3.19e-45	FFCP PHASE2:Hg19::chr19:3294647..3294651,+	p@chr19:3294647..3294651, +
3.19e-45	FFCP PHASE1:Hg19::chr19:3294647..3294651,+	p@chr19:3294647..3294651, +
6.26e-45	FFCP PHASE2:Hg19::chr8:27316567..27316576,+	p@chr8:27316567..27316576, +
6.26e-45	FFCP PHASE2:Hg19::chr5:63258078..63258088,-	p6@HTR1A
6.26e-45	FFCP PHASE1:Hg19::chr5:63258078..63258088,-	p6@HTR1A
6.26e-45	FFCP PHASE1:Hg19::chr8:27316567..27316576,+	p@chr8:27316567..27316576, +
6.26e-45	FFCP PHASE2:Hg19::chr9:87426979..87426990,+	p54@NTRK2
6.26e-45	FFCP PHASE1:Hg19::chr9:87426979..87426990,+	p54@NTRK2
7.83e-45	FFCP PHASE2:Hg19::chr2:101965038..101965076,-	p@chr2:101965038..101965076, -
7.83e-45	FFCP PHASE1:Hg19::chr2:101965038..101965076,-	p@chr2:101965038..101965076, -
7.83e-45	FFCP PHASE2:Hg19::chr1:160112787..160112798,+	p12@ATP1A2
7.83e-45	FFCP PHASE2:Hg19::chr5:63258105..63258124,-	p2@HTR1A
7.83e-45	FFCP PHASE1:Hg19::chr1:160112787..160112798,+	p12@ATP1A2
7.83e-45	FFCP PHASE1:Hg19::chr5:63258105..63258124,-	p2@HTR1A

Showing 1 to 100 of 100 entries

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 |part_of=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|is_obsolete=
+|preceded_by=
 }}

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UBERON:0003022: Difference between revisions

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Revision as of 17:17, 15 June 2012

Ontology Tree: Loaded from BioPortal

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