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|gostat_on_MCL_coexpression=GO:0008184;glycogen phosphorylase activity;0.0488854428731276;110095!GO:0004645;phosphorylase activity;0.0488854428731276;110095!GO:0005579;membrane attack complex;0.0488854428731276;15139!GO:0006957;complement activation, alternative pathway;0.0488854428731276;15139!GO:0010092;specification of organ identity;0.0488854428731276;14164!GO:0001759;induction of an organ;0.0488854428731276;14164!GO:0031128;induction;0.0488854428731276;14164!GO:0045168;cell-cell signaling during cell fate commitment;0.0488854428731276;14164!GO:0050679;positive regulation of epithelial cell proliferation;0.0488854428731276;14164!
|gostat_on_MCL_coexpression=GO:0008184;glycogen phosphorylase activity;0.0488854428731276;110095!GO:0004645;phosphorylase activity;0.0488854428731276;110095!GO:0005579;membrane attack complex;0.0488854428731276;15139!GO:0006957;complement activation, alternative pathway;0.0488854428731276;15139!GO:0010092;specification of organ identity;0.0488854428731276;14164!GO:0001759;induction of an organ;0.0488854428731276;14164!GO:0031128;induction;0.0488854428731276;14164!GO:0045168;cell-cell signaling during cell fate commitment;0.0488854428731276;14164!GO:0050679;positive regulation of epithelial cell proliferation;0.0488854428731276;14164!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!1.51e-14!14;UBERON:0000117!1.51e-14!14;UBERON:0000171!1.51e-14!14;UBERON:0000170!1.51e-14!14;UBERON:0005597!1.51e-14!14;UBERON:0000118!1.51e-14!14;UBERON:0009569!3.01e-14!66;UBERON:0005177!3.80e-13!79;UBERON:0005153!8.34e-13!17;UBERON:0002107!5.85e-12!22;UBERON:0007499!5.85e-12!22;UBERON:0006925!5.85e-12!22;UBERON:0009497!5.85e-12!22;UBERON:0000015!5.85e-12!22;UBERON:0002423!5.85e-12!22;UBERON:0006235!5.85e-12!22;UBERON:0008835!5.85e-12!22;UBERON:0003894!5.85e-12!22;UBERON:0004161!5.85e-12!22;UBERON:0008836!5.85e-12!22;UBERON:0000466!1.07e-11!79;UBERON:0005178!3.21e-11!17;UBERON:0005181!3.21e-11!17;UBERON:0002224!3.21e-11!17;UBERON:0000915!3.21e-11!17;UBERON:0008947!3.21e-11!17;UBERON:0003258!3.21e-11!17;UBERON:0009854!3.26e-11!23;UBERON:0009856!3.26e-11!23;UBERON:0002365!3.46e-11!25;UBERON:0002330!3.46e-11!25;UBERON:0002100!7.68e-11!90;UBERON:0005157!3.31e-10!20;UBERON:0005911!3.32e-09!69;UBERON:0001041!1.49e-08!80
}}
}}

Revision as of 16:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:3931609..3931617,+p3@Sec14l4
Mm9::chr12:71332401..71332444,-p2@Pygl
Mm9::chr16:34807311..34807395,+p@chr16:34807311..34807395
+
Mm9::chr18:39026661..39026670,-p10@Fgf1
Mm9::chr18:39026712..39026728,-p2@Fgf1
Mm9::chr18:39026735..39026746,-p8@Fgf1
Mm9::chr2:34916923..34916939,-p1@Hc


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008184glycogen phosphorylase activity0.0488854428731276
GO:0004645phosphorylase activity0.0488854428731276
GO:0005579membrane attack complex0.0488854428731276
GO:0006957complement activation, alternative pathway0.0488854428731276
GO:0010092specification of organ identity0.0488854428731276
GO:0001759induction of an organ0.0488854428731276
GO:0031128induction0.0488854428731276
GO:0045168cell-cell signaling during cell fate commitment0.0488854428731276
GO:0050679positive regulation of epithelial cell proliferation0.0488854428731276



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung1.51e-1414
respiratory tube1.51e-1414
respiration organ1.51e-1414
pair of lungs1.51e-1414
lung primordium1.51e-1414
lung bud1.51e-1414
subdivision of trunk3.01e-1466
trunk region element3.80e-1379
epithelial bud8.34e-1317
liver5.85e-1222
epithelial sac5.85e-1222
digestive gland5.85e-1222
epithelium of foregut-midgut junction5.85e-1222
anatomical boundary5.85e-1222
hepatobiliary system5.85e-1222
foregut-midgut junction5.85e-1222
hepatic diverticulum5.85e-1222
liver primordium5.85e-1222
septum transversum5.85e-1222
liver bud5.85e-1222
immaterial anatomical entity1.07e-1179
thoracic cavity element3.21e-1117
thoracic segment organ3.21e-1117
thoracic cavity3.21e-1117
thoracic segment of trunk3.21e-1117
respiratory primordium3.21e-1117
endoderm of foregut3.21e-1117
digestive tract diverticulum3.26e-1123
sac3.26e-1123
exocrine gland3.46e-1125
exocrine system3.46e-1125
trunk7.68e-1190
epithelial fold3.31e-1020
endo-epithelium3.32e-0969
foregut1.49e-0880


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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