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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.293885133730231,0.326672443141665,0.251644266054924,0.531014139674511,0.357239904682079,0.203280426917593,0.218817922775932,0.29477126112372,0.360988847166376,0.305194816144563,0.232480246505368,0.208323353653679,0.210256940296116,0.0670678654950971,0.805368776463617,0.723892350888897,0,0.0896964873768703,0,0,0,0,0,0,0.231579946729754,0,0,0,0,0,0.345653031762812,0.408692801612187,0.613621682230084,0.483535552624117,0.676188079059114,0.501816402035041,0,0,0,0,0,0,0,0,0,0.122210736921952,0,0.125836948423969,0,0,0,0,0,0,0,0,0.336601420967372,0.386245658243356,0.308552842430081,0.196144519242639,0,0,0,0,0,0,0,0,0,0,0.070420826802731,0.0310288534679737,0,0,0,0,0,0.057904487844994,0,0,0,0.0158508717912236,0,0,0,0,0,0,0,0.0285370623344958,0,0,0,0,0,0,0,0,0,0,0.0681426399143868,0.270980070248907,0.0300545597055,0,0,0,0,0.0482820047261801,0,0,0,0,0.0651189800845078,0.247851405740781,0.342198254133332,0,0,0,0,0.490826925081274,0.102046789866422,0.571879840333382,0,0,0,0.0348015516584171,0,0,0,0,0.299998574286809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190505741592208,0.17396494809708,0.475546909418141,0,0.0457501310086346,0,0,0,0,0,0,0.0239809638088447,0,0,0.0169266687412288,0.0592603993571966,0.0430998257964463,0.0273460503695069,0.0762328323016085,0,0,0,0,0,0.049794559917327,0,0,0,0,0,0,0,0,0.139241831090348,0,0,0.0698350044299415,0,0,0.040250349638994,0.0384935222863376,0.0294389011296462,0,0,0,0,0,0.121629715256569,0,0.155997372347367,0.114057012866858,0.203685621581279,0.172491333021077,0.0986943557653845,0.121976689400977,0.14772330979596,0,0,0,0,0.0716601710131013,0,0.0368139433955263,0,0.0327833179115153,0,0,0.0627426684755505,0,0,0.0317858514275138,0.043440458408578,0.0922344099208638,0.0945053225286664,0.0691813633419548,0,0,0,0,0,0,0,0,0.0488838268300191,0,0,0,0,0,0,0,0,0,0,0.0542622456065255,0,0,0,0,0,0,0,0,0,0,0,0.0662094793827,0,0,0,0,0,0,0.0421696201982708,0,0,0,0,0,0,0,0,0,0.0254340553719351,0,0,0.0555439831843405,0,0.321192475822301,0.145388264727709,0.276466822071145,0.279882758564445,0.306221898109555,0.367007678354548,0.423440632079318,0.510440879264868,0.441804503922454,0,0,0,0,0,0.0428882730496471,0,0.034489466458534,0,0,0,0,0,0,0.0771684068561175,0.0527554171614426,0,0,0,0,0,0,0.752919083037112,0.377462273831216,0.478352650454429,0.540141152486628,0.702320309878677,0.727363471940821,0.794201588423161,0.779569974076269,0.723524076805321,0.815226966872655,0.801469215117105,0.76861284273804,0.801057533322717,0.918802019673495,0,0,0,0,0.0383547285828163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0684580848992459,0,0.0413232520190408,0,0,0.074928130785232,0.0604381279967265,0.0489230553888678,0.098117166361508,0.069506813507616,0.0745542549075041,0.0269518943326477,0.0242538736058389,0,0.0238095886952444,0.0766073954291401,0,0.0298193647598867,0.0640168649599105,0.0709519923534245,0.092873634605593,0.0589368614163519,0.0195303707501796,0.0352754493378881,0,0,0.0553034373508932,0,0.0243442052522616,0.020400916685161,0,0.0312791175364151,0.0383032227056179,0,0,0.0845301845292944,0,0,0.0452820579159438
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|gostat_on_MCL_coexpression=GO:0004727;prenylated protein tyrosine phosphatase activity;0.0385616063713236;320139!
|gostat_on_MCL_coexpression=GO:0004727;prenylated protein tyrosine phosphatase activity;0.0385616063713236;320139!
|ontology_enrichment_celltype=CL:0000988!8.59e-11!32;CL:0002032!8.59e-11!32;CL:0000037!8.59e-11!32;CL:0000566!8.59e-11!32;CL:0000837!8.59e-11!32;CL:0002031!5.10e-08!25;CL:0000838!2.74e-07!12;CL:0002320!3.39e-07!46;CL:0000134!3.39e-07!46;CL:0000084!7.45e-07!11;CL:0000827!7.45e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!3.02e-23!48;UBERON:0002405!3.02e-23!48;UBERON:0002390!4.85e-23!45;UBERON:0003061!4.85e-23!45;UBERON:0004177!1.73e-17!29;UBERON:0005057!1.73e-17!29;UBERON:0002370!9.51e-14!23;UBERON:0000974!9.51e-14!23;UBERON:0004807!9.51e-14!23;UBERON:0005058!9.51e-14!23;UBERON:0003351!9.51e-14!23;UBERON:0009113!9.51e-14!23;UBERON:0003295!9.51e-14!23;UBERON:0009722!9.51e-14!23;UBERON:0005562!9.51e-14!23;UBERON:0007690!9.51e-14!23;UBERON:0000077!2.23e-13!35;UBERON:0006562!8.46e-13!24;UBERON:0003408!8.46e-13!24;UBERON:0001557!8.46e-13!24;UBERON:0001042!8.46e-13!24;UBERON:0008814!8.46e-13!24;UBERON:0009145!8.46e-13!24;UBERON:0000072!2.08e-10!27;UBERON:0003081!2.90e-10!87;UBERON:0000065!4.36e-09!41;UBERON:0001004!1.24e-08!42;UBERON:0001041!6.48e-08!80;UBERON:0002384!3.39e-07!46;UBERON:0000926!5.42e-07!120;UBERON:0004120!5.42e-07!120;UBERON:0006603!5.42e-07!120
}}
}}

Revision as of 18:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:84154870..84154893,+p3@Parvg
Mm9::chr15:84154896..84154913,+p4@Parvg
Mm9::chr17:35185512..35185532,+p@chr17:35185512..35185532
+
Mm9::chr1:137029835..137029846,+p3@Ptpn7


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004727prenylated protein tyrosine phosphatase activity0.0385616063713236



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system3.02e-2348
immune system3.02e-2348
hematopoietic system4.85e-2345
blood island4.85e-2345
hemopoietic organ1.73e-1729
immune organ1.73e-1729
thymus9.51e-1423
neck9.51e-1423
respiratory system epithelium9.51e-1423
hemolymphoid system gland9.51e-1423
pharyngeal epithelium9.51e-1423
thymic region9.51e-1423
pharyngeal gland9.51e-1423
entire pharyngeal arch endoderm9.51e-1423
thymus primordium9.51e-1423
early pharyngeal endoderm9.51e-1423
mixed endoderm/mesoderm-derived structure2.23e-1335
pharynx8.46e-1324
gland of gut8.46e-1324
upper respiratory tract8.46e-1324
chordate pharynx8.46e-1324
pharyngeal arch system8.46e-1324
pharyngeal region of foregut8.46e-1324
segment of respiratory tract2.08e-1027
lateral plate mesoderm2.90e-1087
respiratory tract4.36e-0941
respiratory system1.24e-0842
foregut6.48e-0880
connective tissue3.39e-0746
mesoderm5.42e-07120
mesoderm-derived structure5.42e-07120
presumptive mesoderm5.42e-07120


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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