UBERON:0000926
From FANTOM5_SSTAR
| Name: | mesoderm | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm] | |
| Xrefs: |
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| Synonyms: |
"entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm] "mesodermal mantle" RELATED [] | |
| Comments: | Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[1]. Mesoderm may not be homologous across verteberates[UBERONREF:0000002] | |
| Alt_id: |
UBERON:0003263 UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041 | |
| Subset: |
uberon_slim vertebrate_core |
Mesoderm.png]
200px-Mesoderm.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000923(germ layer) |
|---|---|
| develops_from: | UBERON:0006603(presumptive mesoderm) |
Children
| is a: | UBERON:0005721 (pronephric mesoderm) |
|---|---|
| derives from: | FF:0200026 (mouse mesoderm, embryonic day 8.5 sample) |
| develops from: | UBERON:0000042 (serous membrane),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0000990 (reproductive system),UBERON:0001136 (mesothelium),UBERON:0001235 (adrenal cortex),UBERON:0001986 (endothelium),UBERON:0002072 (hypodermis),UBERON:0002358 (peritoneum),UBERON:0002385 (muscle tissue),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0004120 (mesoderm-derived structure),UBERON:0006904 (head mesenchyme from mesoderm),UBERON:0009617 (head paraxial mesoderm),UBERON:0009618 (trunk paraxial mesoderm),UBERON:0012275 (meso-epithelium) |
| part of: | CL:0000222 (mesodermal cell),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003082 (myotome),UBERON:0004016 (dermatome),UBERON:0004290 (dermomyotome),UBERON:0007285 (presumptive paraxial mesoderm) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11947-126B3 (Mesoderm, embryo E8.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000926 (mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Primary germ layer that is the middle of the embryonic germ layers.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
