UBERON:0003077
From FANTOM5_SSTAR
| Name: | paraxial mesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm] | ||
| Xrefs: |
| ||
| Synonyms: |
"mesoderma paraxiale" RELATED LATIN [Wikipedia:Paraxial_mesoderm] "paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255] "somitic mesoderm" EXACT [ISBN:9780878932504] | ||
| Comments: | AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here) | ||
| Alt_id: | UBERON:XAO_0000259-ZFA_0000255 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray19_with_color.png]
200px-Gray19_with_color.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue),UBERON:0015212(lateral structure) |
|---|---|
| develops_from: | UBERON:0007285(presumptive paraxial mesoderm) |
| part_of: | UBERON:0000922(embryo),UBERON:0000926(mesoderm) |
Children
| part of: | UBERON:0003059 (presomitic mesoderm),UBERON:0009617 (head paraxial mesoderm),UBERON:0009618 (trunk paraxial mesoderm) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003077 (paraxial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.34e-47 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_3f8a1915edfe77c0794b44d9e626b7d2 | p@chrX:160838683..160838694, + |
| 1.34e-47 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_3f8a1915edfe77c0794b44d9e626b7d2 | p@chrX:160838683..160838694, + |
| 8.78e-44 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_a5bcb73ee49cfa290a5fb56f20d9a61b | p8@ARHGAP22 |
| 8.78e-44 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_a5bcb73ee49cfa290a5fb56f20d9a61b | p8@ARHGAP22 |
| 5.06e-41 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3c007444b5115837287a4489a03a3544 | p@chrX:65748600..65748616, + |
| 5.06e-41 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3c007444b5115837287a4489a03a3544 | p@chr12:105433069..105433075, - |
| 5.06e-41 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3c007444b5115837287a4489a03a3544 | p@chrX:65748600..65748616, + |
| 5.06e-41 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3c007444b5115837287a4489a03a3544 | p@chr12:105433069..105433075, - |
| 3.83e-40 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_bebe98222e6ec6a12ca610b134c8d6d6 | p@chr6:53359400..53359406, + |
| 3.83e-40 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_bebe98222e6ec6a12ca610b134c8d6d6 | p@chr6:53359400..53359406, + |
| 6.64e-40 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_bbba0381625ba0e79ad5c072240293b9 | p@chrX:160838787..160838800, + |
| 6.64e-40 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_bbba0381625ba0e79ad5c072240293b9 | p@chrX:160838787..160838800, + |
| 1.1e-38 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_0c1f3917ffebf5fc9226f8284690fc18 | p4@ARHGAP22 |
| 1.1e-38 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_0c1f3917ffebf5fc9226f8284690fc18 | p4@ARHGAP22 |
| 2.48e-38 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_687c2e633fc716a1a081810f3a8a6846 | p@chr9:35685631..35685657, + |
| 2.48e-38 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_687c2e633fc716a1a081810f3a8a6846 | p@chr9:35685631..35685657, + |
| 9.32e-38 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_a4699ee1d4eb6c7d9938e1e9d4910654 | p2@SASH1 |
| 9.32e-38 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_a4699ee1d4eb6c7d9938e1e9d4910654 | p2@SASH1 |
| 6.65e-36 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_1054f71e13e06a9543ca6c37f109c37b | p@chr11:81849982..81850000, + |
| 6.65e-36 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_1054f71e13e06a9543ca6c37f109c37b | p@chr11:81849982..81850000, + |
| 6.84e-36 | FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_bb50df014894fbb93b2044d690187a14 | p3@ARHGAP22 |
| 6.84e-36 | FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_bb50df014894fbb93b2044d690187a14 | p3@ARHGAP22 |
| 1.05e-34 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_3e9d0fed72f6059f5507b3837d690d53 | p2@RCN3 |
| 1.05e-34 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_3e9d0fed72f6059f5507b3837d690d53 | p2@RCN3 |
| 9.31e-34 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_8c38408f6619fa031c8f13e3763a7e81 | p@chr9:35685445..35685517, + |
| 9.31e-34 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_8c38408f6619fa031c8f13e3763a7e81 | p@chr9:35685445..35685517, + |
| 1.65e-33 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_b4f8ef76b0a3c87691b5a09234d2dc06 | p@chr9:35684475..35684520, + |
| 1.65e-33 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_b4f8ef76b0a3c87691b5a09234d2dc06 | p@chr9:35684475..35684520, + |
| 1.81e-33 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_965fd4b959bd16ff67c55bbab8a3db6e | p@chr13:119579287..119579292, + |
| 1.81e-33 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_965fd4b959bd16ff67c55bbab8a3db6e | p@chr13:119579287..119579292, + |
| 2.11e-33 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_6b52cdaf2174d8ee8760b594881669b1 | p@chr17:14813242..14813246, - |
| 2.11e-33 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_6b52cdaf2174d8ee8760b594881669b1 | p@chr17:14813242..14813246, - |
| 2.37e-33 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_a8f8b6efee98e4b84c18eed492ec1074 | p3@IFI27L2 |
| 2.37e-33 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_a8f8b6efee98e4b84c18eed492ec1074 | p3@IFI27L2 |
| 3.52e-33 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_5dea0caabad130bd008915f04b840d09 | p2@LRRC17 |
| 3.52e-33 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_5dea0caabad130bd008915f04b840d09 | p2@LRRC17 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_756bb9d037fa0ef7c2987c95b60f2fea | p1@LRRC17 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_756bb9d037fa0ef7c2987c95b60f2fea | p1@LRRC17 |
| 1.29e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_290b0400e3d60fab4f95665acea71759 | p@chr9:35689148..35689192, + |
| 1.29e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_290b0400e3d60fab4f95665acea71759 | p@chr9:35689148..35689192, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160840048..160840057, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160840025..160840037, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160823859..160823870, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160823859..160823870, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160840025..160840037, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_c90d7705b4e2b1eed6ac9f879443bf19 | p@chrX:160840048..160840057, + |
| 4.43e-32 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_4fe08a8223baa5eed38fe83718a4ec4c | p4@Gpr39 |
| 4.43e-32 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_4fe08a8223baa5eed38fe83718a4ec4c | p4@Gpr39 |
| 6.91e-32 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_f98244d462f5f0f94f0a78bbf6c103d9 | p6@COL6A2 |
| 6.91e-32 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_f98244d462f5f0f94f0a78bbf6c103d9 | p6@COL6A2 |
| 1.87e-31 | FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_7b6334f6a26580aa028d7f85be91fece | p2@COL6A2 |
| 1.87e-31 | FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_7b6334f6a26580aa028d7f85be91fece | p2@COL6A2 |
| 1.97e-31 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_6a123422f0bb0d59c681bf2ea54784a2 | p@chr4:74703497..74703511, + |
| 1.97e-31 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_6a123422f0bb0d59c681bf2ea54784a2 | p@chr4:74703497..74703511, + |
| 2.69e-31 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_f5055f0dc97a63b09e0fd38b49ca3925 | p@chr2:134548872..134548879, - |
| 2.69e-31 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_f5055f0dc97a63b09e0fd38b49ca3925 | p@chr2:134548872..134548879, - |
| 5.9e-31 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_52281d4468fca6e6629a06441a57d05f | p@chr9:35685273..35685313, + |
| 5.9e-31 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_52281d4468fca6e6629a06441a57d05f | p@chr9:35685273..35685313, + |
| 1.59e-30 | FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_709a017275c513a9200a1a2ea92a54b5 | p1@AK074416 |
| 1.59e-30 | FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_709a017275c513a9200a1a2ea92a54b5 | p1@AK074416 |
| 2.29e-30 | FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_110c9c5f8e4319ce44f9b8b945d14094 | p2@LTBP1 |
| 2.29e-30 | FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_110c9c5f8e4319ce44f9b8b945d14094 | p2@LTBP1 |
| 4.87e-30 | FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_de716c4a4538345b6122f07160063806 | p@chr7:100773764..100773799, - |
| 4.87e-30 | FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_de716c4a4538345b6122f07160063806 | p@chr7:100773764..100773799, - |
| 5.03e-30 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_f51b4cb22b12125aeb4895846d2b607d | p2@ELTD1 |
| 5.03e-30 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_f51b4cb22b12125aeb4895846d2b607d | p2@ELTD1 |
| 5.09e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_f6363582dc335f0fbfcfead02fa2883a | p1@CU675118 |
| 5.09e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_f6363582dc335f0fbfcfead02fa2883a | p1@CU675118 |
| 1.0e-29 | FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_f8f17aeba7575215b3cd041b318e2e00 | p8@COL6A2 |
| 1.0e-29 | FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_f8f17aeba7575215b3cd041b318e2e00 | p8@COL6A2 |
| 1.82e-29 | FFCP PHASE2:Hg19::chr7:100773872..100773904,-#_3ca8f815b09836c4e5753404cd419982 | p@chr7:100773872..100773904, - |
| 1.82e-29 | FFCP PHASE1:Hg19::chr7:100773872..100773904,-#_3ca8f815b09836c4e5753404cd419982 | p@chr7:100773872..100773904, - |
| 1.95e-29 | FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_8dc970b904097a365e18b81edbc4a64d | p@chr21:47542827..47542859, - |
| 1.95e-29 | FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_8dc970b904097a365e18b81edbc4a64d | p@chr21:47542827..47542859, - |
| 2.28e-29 | FFCP PHASE1:Hg19::chr12:53492630..53492661,+#_ac2e5de35a07b3bbfe64410ea025e99d | p4@IGFBP6 |
| 2.28e-29 | FFCP PHASE2:Hg19::chr12:53492630..53492661,+#_ac2e5de35a07b3bbfe64410ea025e99d | p4@IGFBP6 |
| 2.31e-29 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_c79567a08460a6792c94f4a7770c549b | p@chr11:102661517..102661541, - |
| 2.31e-29 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_c79567a08460a6792c94f4a7770c549b | p@chr11:102661517..102661541, - |
| 3.61e-29 | FFCP PHASE2:Hg19::chr4:86699834..86699889,+#_94ee01e73990afddbe7238459477178d | p5@ARHGAP24 |
| 3.61e-29 | FFCP PHASE1:Hg19::chr4:86699834..86699889,+#_94ee01e73990afddbe7238459477178d | p5@ARHGAP24 |
| 5.21e-29 | FFCP PHASE2:Hg19::chr21:47532107..47532192,+#_b12a522ba5b2de7c706386515d390d8a | p5@COL6A2 |
| 5.21e-29 | FFCP PHASE1:Hg19::chr21:47532107..47532192,+#_b12a522ba5b2de7c706386515d390d8a | p5@COL6A2 |
| 5.71e-29 | FFCP PHASE2:Hg19::chr4:174430774..174430814,+#_562c9da2656b08d2749acd9e04aa80e2 | p@chr4:174430774..174430814, + |
| 5.71e-29 | FFCP PHASE1:Hg19::chr4:174430774..174430814,+#_562c9da2656b08d2749acd9e04aa80e2 | p@chr4:174430774..174430814, + |
| 5.79e-29 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_80423fcffeb373c572012277794accaa | p2@CXCL6 |
| 5.79e-29 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_80423fcffeb373c572012277794accaa | p2@CXCL6 |
| 7.21e-29 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_92ba0ecafdbc321b3e3e64557fbc989f | p@chr1:127574253..127574264, + |
| 7.21e-29 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_92ba0ecafdbc321b3e3e64557fbc989f | p@chr1:127574253..127574264, + |
| 7.95e-29 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0b66a50a9d2c69f7a24ecdff6afc4cbd | p11@Fam198b |
| 7.95e-29 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0b66a50a9d2c69f7a24ecdff6afc4cbd | p11@Fam198b |
| 8.93e-29 | FFCP PHASE1:Hg19::chr9:35685692..35685745,-#_9157c28858178772777a23f94fc14ed2 | p2@TPM2 |
| 8.93e-29 | FFCP PHASE2:Hg19::chr9:35685692..35685745,-#_9157c28858178772777a23f94fc14ed2 | p2@TPM2 |
| 9.39e-29 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_5d76f39d6b8799ab230bd169f088ba5e | p7@Gpr39 |
| 9.39e-29 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_5d76f39d6b8799ab230bd169f088ba5e | p7@Gpr39 |
| 1.07e-28 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_0133137e2f32480ff5b9b83f923ab68e | p11@Gpr39 |
| 1.07e-28 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_0133137e2f32480ff5b9b83f923ab68e | p11@Gpr39 |
| 1.11e-28 | FFCP PHASE1:Hg19::chr17:77020171..77020195,+#_1cfc9111a91b10345f625b1b2322122b | p3@C1QTNF1 |
| 1.11e-28 | FFCP PHASE2:Hg19::chr17:77020171..77020195,+#_1cfc9111a91b10345f625b1b2322122b | p3@C1QTNF1 |
| 1.22e-28 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_a116398c7b5bd61281652b666871d00c | p@chrX:160839768..160839780, + |
| 1.22e-28 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_a116398c7b5bd61281652b666871d00c | p@chrX:160839768..160839780, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
