Personal tools

MCL coexpression mm9:3757: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=-0.047390219691193,-0.318575668227108,-0.318575668227108,-0.22507833543842,-0.318575668227108,-0.272446183732686,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,0.236096902422152,-0.298731481074837,-0.318575668227108,-0.275388981795999,-0.250147646792807,-0.142775407853949,-0.318575668227108,-0.318575668227108,-0.199950307524862,-0.220960888049956,-0.231600248443713,0.209174179927762,0.227321655824911,-0.318575668227108,-0.121008441369486,-0.142859820320818,-0.19113701679983,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,0.153444472145617,0.0270966081540718,0.134049008870706,-0.0888410696925432,-0.161406012323857,-0.121008441369486,-0.119015282490203,0.0862325093958777,0.0471050591596612,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.0215835375792335,-0.143096946864699,0.0874560521255435,-0.121008441369486,-0.121008441369486,-0.105368428946654,0.183597020543675,-0.121008441369486,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.121008441369486,-0.00686971888594612,-0.0815783371150685,-0.0509152469141791,-0.0534511515310399,-0.121008441369486,-0.159689599445217,-0.132356801272219,-0.148540738670298,-0.318575668227108,-0.0173852556345043,-0.121008441369486,-0.223497753881345,-0.067205642690265,-0.103622332131889,-0.121008441369486,-0.0543367401471589,-0.124682656288114,-0.0360012495596773,-0.00886324933455447,-0.0632010128907509,-0.125674305191829,0.174940729006549,0.224730014865803,0.549305219153628,0.116128573124976,-0.318575668227108,-0.131138658207082,-0.318575668227108,-0.318575668227108,-0.124956456222398,-0.0126695441722152,0.060712843803108,-0.0259729664756451,0.229836054498633,-0.121008441369486,0.664043982697373,-0.318575668227108,0.149894857469174,0.0828523068373413,0.0609654564510367,0.253777753794675,-0.137339440663979,0.372500772128024,0.0609654097530622,0.224926061588359,0.2300312075541,0.279789165945049,0.192499887532572,0.0907347714995946,0.309561758820953,0.07720792310384,-0.318575668227108,0.0993389785847082,-0.121008441369486,-0.121008441369486,-0.318575668227108,-0.121008441369486,-0.0384217050475792,-0.241042272560735,-0.24655196897526,-0.135750554436833,-0.287893156650546,-0.0603896726930141,-0.0576750824439173,-0.0745643742555084,-0.121008441369486,-0.0338779146774846,-0.108159721715836,-0.0606077444123909,0.329120806575154,0.0324606747780534,0.123756589544863,-0.0380645086195219,0.275357680152023,0.199809417675707,0.184007342164461,-0.00659442343189184,0.143185849366263,-0.0686555601593902,0.0453791268041413,0.128461445549367,0.465602336809327,0.310669625610028,0.363178487818458,0.133315947084884,0.37370594085337,0.395672422917282,0.139808849715763,0.321269408997777,-0.318575668227108,-0.318575668227108,-0.231223812644928,0.168740593674488,0.291940933254134,0.197132635529066,0.244593030089708,0.186646445347728,0.136452829748405,0.238841749863734,0.248461052900141,0.109591704190847,0.17726790627997,0.0754392529733307,0.0722249936557729,0.100182851734714,-0.034808789776593,-0.0231083953584433,0.0744780054668039,0.0287088844810457,-0.215855766502536,-0.237942278777031,0.283335224846663,0.333710023683945,0.234985670499834,0.160975925141308,-0.0966051252426107,-0.17855459319057,-0.149922331729905,0.00264655011700247,-0.095813152031956,-0.04220502498914,-0.0894591821874862,-0.121008441369486,-0.121008441369486,-0.0641327110748836,0.143324704051852,0.317374681592604,0.571423938687774,0.398962513898587,0.492118456651313,0.759391635460887,0.728454434341706,0.770532740797795,0.647404727587742,0.763415708420927,-0.00825178927339083,0.00404652232670338,-0.0430743254484472,-0.0399481567982654,-0.121008441369486,-0.318575668227108,-0.139813993492869,-0.0111950483747172,-0.121008441369486,-0.0156476751098057,0.0684013938832785,0.0163902834492364,-0.121008441369486,-0.140993647417633,-0.0836562527666481,-0.147597511774264,0.257915165580913,0.265661588139832,0.392553997845516,0.407032619442131,0.466191664768557,0.549713914946215,0.516832484490664,0.376815171406954,0.513502888459454,0.525251544281049,0.537391575155358,0.274357124146491,0.407101164983103,0.375726595352184,-0.318575668227108,-0.318575668227108,0.0526917604432837,0.0579435733751743,-0.0255882185893387,-0.139524950781372,0.240487766154891,-0.121008441369486,0.228468335063007,0.275422913140797,0.214654810710953,0.220395214510204,0.516679388435171,0.353431574714133,0.384552884881175,0.0788870133264808,0.133852836163632,0.0403647513127399,0.0388752360231057,0.203344312176304,0.326908119827386,0.0833527731268806,-0.121008441369486,0.0508821277135365,-0.00628954504265741,0.0179917764125241,-0.117013656454271,-0.00458828538933669,0.0203972836362468,0.184015630040904,0.194855338888608,0.0150604919690704,-0.121008441369486,0.146261865027431,-0.0342093151337101,0.159943694233452,0.0419395194392292,0.186198711752036,0.111825333078169,0.157144404007848,0.0826620238817976,-0.00557602723997361,0.486525091419219,0.678042604084204,-0.0344605527616381,0.0989805948849007,0.173190194645471,0.182656906938838,0.145310978528122,0.2112252050999,-0.121008441369486,0.0159816863707276,-0.250066662863368,0.0835811472371826,0.0548799842943671,-0.145300552345062,-0.234883225943991,-0.318575668227108,-0.0932886912041065,-0.109457228948316,-0.189210504550058,-0.121008441369486,0.227047561631211,0.137455919544926,0.181126094456078,0.030721871401819,-0.0459335023011407,0.121267850662556,0.0772565563785769,-0.0881407559579632,-0.068078000955929,-0.121008441369486,-0.318575668227108,0.276090908659408,0.275038512112532,0.214791771107346,0.229805516747908,0.162504682994618,0.337345808536706,0.247248780375054,0.214403431441304,-0.0461862970020396,-0.229918153598975,-0.199316109035002,0.00579446302990416,-0.0115011253929211,-0.136822579563108,-0.105299826367093,-0.173266518866042,-0.184849559073415,-0.258751249565164,-0.276801583428283,-0.25042640504807,-0.260065286725586,-0.278187806751054,-0.318575668227108,-0.318575668227108,-0.121008441369486,0.398906193038668,0.0922530124195676,0.440943840009569,0.0208735888783265,0.0457458930414686,0.0145386595491721,-0.0496530378804724,-0.0381319185181575,-0.318575668227108,-0.121008441369486,-0.143144260525338,-0.13800266355847,0.0349344537250468,-0.318575668227108,-0.318575668227108,-0.178379937907459,-0.156267490676941,-0.158640941992702,0.165467368705387,0.322084334605298,0.338092860398809,0.253140548115962,0.0736449067112524,-0.121008441369486,0.155220507335565,0.249489963186085,0.0943219726137703,0.0566418615632049,0.183033169578505,0.123146259322561,0.132396069060062,0.093902008587137,0.121860007360634,0.318318834143246,0.263624211146663,0.0973010036004151,0.140057296666826,0.239571239822568,0.0564432504813843,0.176928384058647,0.0483345271298984,0.162609786896064,0.105460820860631,0.103717164445975,0.21009215978786,0.191227927226075,0.101922223066577,0.192581357801385,0.139701709789308,0.187025740993159,0.138695809379923,0.164463586132653,0.201892055615148,0.12054757339686,-0.00345284367438087,0.179557069751747,0.0845974897776737,0.0263076106262555,-0.0055232696915356
|coexpression_dpi_cluster_scores_median=-0.047390219691193,-0.318575668227108,-0.318575668227108,-0.22507833543842,-0.318575668227108,-0.272446183732686,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,0.236096902422152,-0.298731481074837,-0.318575668227108,-0.275388981795999,-0.250147646792807,-0.142775407853949,-0.318575668227108,-0.318575668227108,-0.199950307524862,-0.220960888049956,-0.231600248443713,0.209174179927762,0.227321655824911,-0.318575668227108,-0.121008441369486,-0.142859820320818,-0.19113701679983,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.318575668227108,0.153444472145617,0.0270966081540718,0.134049008870706,-0.0888410696925432,-0.161406012323857,-0.121008441369486,-0.119015282490203,0.0862325093958777,0.0471050591596612,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.0215835375792335,-0.143096946864699,0.0874560521255435,-0.121008441369486,-0.121008441369486,-0.105368428946654,0.183597020543675,-0.121008441369486,-0.318575668227108,-0.318575668227108,-0.318575668227108,-0.121008441369486,-0.00686971888594612,-0.0815783371150685,-0.0509152469141791,-0.0534511515310399,-0.121008441369486,-0.159689599445217,-0.132356801272219,-0.148540738670298,-0.318575668227108,-0.0173852556345043,-0.121008441369486,-0.223497753881345,-0.067205642690265,-0.103622332131889,-0.121008441369486,-0.0543367401471589,-0.124682656288114,-0.0360012495596773,-0.00886324933455447,-0.0632010128907509,-0.125674305191829,0.174940729006549,0.224730014865803,0.549305219153628,0.116128573124976,-0.318575668227108,-0.131138658207082,-0.318575668227108,-0.318575668227108,-0.124956456222398,-0.0126695441722152,0.060712843803108,-0.0259729664756451,0.229836054498633,-0.121008441369486,0.664043982697373,-0.318575668227108,0.149894857469174,0.0828523068373413,0.0609654564510367,0.253777753794675,-0.137339440663979,0.372500772128024,0.0609654097530622,0.224926061588359,0.2300312075541,0.279789165945049,0.192499887532572,0.0907347714995946,0.309561758820953,0.07720792310384,-0.318575668227108,0.0993389785847082,-0.121008441369486,-0.121008441369486,-0.318575668227108,-0.121008441369486,-0.0384217050475792,-0.241042272560735,-0.24655196897526,-0.135750554436833,-0.287893156650546,-0.0603896726930141,-0.0576750824439173,-0.0745643742555084,-0.121008441369486,-0.0338779146774846,-0.108159721715836,-0.0606077444123909,0.329120806575154,0.0324606747780534,0.123756589544863,-0.0380645086195219,0.275357680152023,0.199809417675707,0.184007342164461,-0.00659442343189184,0.143185849366263,-0.0686555601593902,0.0453791268041413,0.128461445549367,0.465602336809327,0.310669625610028,0.363178487818458,0.133315947084884,0.37370594085337,0.395672422917282,0.139808849715763,0.321269408997777,-0.318575668227108,-0.318575668227108,-0.231223812644928,0.168740593674488,0.291940933254134,0.197132635529066,0.244593030089708,0.186646445347728,0.136452829748405,0.238841749863734,0.248461052900141,0.109591704190847,0.17726790627997,0.0754392529733307,0.0722249936557729,0.100182851734714,-0.034808789776593,-0.0231083953584433,0.0744780054668039,0.0287088844810457,-0.215855766502536,-0.237942278777031,0.283335224846663,0.333710023683945,0.234985670499834,0.160975925141308,-0.0966051252426107,-0.17855459319057,-0.149922331729905,0.00264655011700247,-0.095813152031956,-0.04220502498914,-0.0894591821874862,-0.121008441369486,-0.121008441369486,-0.0641327110748836,0.143324704051852,0.317374681592604,0.571423938687774,0.398962513898587,0.492118456651313,0.759391635460887,0.728454434341706,0.770532740797795,0.647404727587742,0.763415708420927,-0.00825178927339083,0.00404652232670338,-0.0430743254484472,-0.0399481567982654,-0.121008441369486,-0.318575668227108,-0.139813993492869,-0.0111950483747172,-0.121008441369486,-0.0156476751098057,0.0684013938832785,0.0163902834492364,-0.121008441369486,-0.140993647417633,-0.0836562527666481,-0.147597511774264,0.257915165580913,0.265661588139832,0.392553997845516,0.407032619442131,0.466191664768557,0.549713914946215,0.516832484490664,0.376815171406954,0.513502888459454,0.525251544281049,0.537391575155358,0.274357124146491,0.407101164983103,0.375726595352184,-0.318575668227108,-0.318575668227108,0.0526917604432837,0.0579435733751743,-0.0255882185893387,-0.139524950781372,0.240487766154891,-0.121008441369486,0.228468335063007,0.275422913140797,0.214654810710953,0.220395214510204,0.516679388435171,0.353431574714133,0.384552884881175,0.0788870133264808,0.133852836163632,0.0403647513127399,0.0388752360231057,0.203344312176304,0.326908119827386,0.0833527731268806,-0.121008441369486,0.0508821277135365,-0.00628954504265741,0.0179917764125241,-0.117013656454271,-0.00458828538933669,0.0203972836362468,0.184015630040904,0.194855338888608,0.0150604919690704,-0.121008441369486,0.146261865027431,-0.0342093151337101,0.159943694233452,0.0419395194392292,0.186198711752036,0.111825333078169,0.157144404007848,0.0826620238817976,-0.00557602723997361,0.486525091419219,0.678042604084204,-0.0344605527616381,0.0989805948849007,0.173190194645471,0.182656906938838,0.145310978528122,0.2112252050999,-0.121008441369486,0.0159816863707276,-0.250066662863368,0.0835811472371826,0.0548799842943671,-0.145300552345062,-0.234883225943991,-0.318575668227108,-0.0932886912041065,-0.109457228948316,-0.189210504550058,-0.121008441369486,0.227047561631211,0.137455919544926,0.181126094456078,0.030721871401819,-0.0459335023011407,0.121267850662556,0.0772565563785769,-0.0881407559579632,-0.068078000955929,-0.121008441369486,-0.318575668227108,0.276090908659408,0.275038512112532,0.214791771107346,0.229805516747908,0.162504682994618,0.337345808536706,0.247248780375054,0.214403431441304,-0.0461862970020396,-0.229918153598975,-0.199316109035002,0.00579446302990416,-0.0115011253929211,-0.136822579563108,-0.105299826367093,-0.173266518866042,-0.184849559073415,-0.258751249565164,-0.276801583428283,-0.25042640504807,-0.260065286725586,-0.278187806751054,-0.318575668227108,-0.318575668227108,-0.121008441369486,0.398906193038668,0.0922530124195676,0.440943840009569,0.0208735888783265,0.0457458930414686,0.0145386595491721,-0.0496530378804724,-0.0381319185181575,-0.318575668227108,-0.121008441369486,-0.143144260525338,-0.13800266355847,0.0349344537250468,-0.318575668227108,-0.318575668227108,-0.178379937907459,-0.156267490676941,-0.158640941992702,0.165467368705387,0.322084334605298,0.338092860398809,0.253140548115962,0.0736449067112524,-0.121008441369486,0.155220507335565,0.249489963186085,0.0943219726137703,0.0566418615632049,0.183033169578505,0.123146259322561,0.132396069060062,0.093902008587137,0.121860007360634,0.318318834143246,0.263624211146663,0.0973010036004151,0.140057296666826,0.239571239822568,0.0564432504813843,0.176928384058647,0.0483345271298984,0.162609786896064,0.105460820860631,0.103717164445975,0.21009215978786,0.191227927226075,0.101922223066577,0.192581357801385,0.139701709789308,0.187025740993159,0.138695809379923,0.164463586132653,0.201892055615148,0.12054757339686,-0.00345284367438087,0.179557069751747,0.0845974897776737,0.0263076106262555,-0.0055232696915356
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!4.89e-09!14;UBERON:0000117!4.89e-09!14;UBERON:0000171!4.89e-09!14;UBERON:0000170!4.89e-09!14;UBERON:0005597!4.89e-09!14;UBERON:0000118!4.89e-09!14;UBERON:0005157!6.15e-09!20;UBERON:0005178!1.33e-08!17;UBERON:0005181!1.33e-08!17;UBERON:0002224!1.33e-08!17;UBERON:0000915!1.33e-08!17;UBERON:0008947!1.33e-08!17;UBERON:0003258!1.33e-08!17;UBERON:0005153!6.00e-08!17;UBERON:0006554!4.07e-07!18
}}
}}

Revision as of 20:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chrX:5977145..5977179,+p3@Shroom4
Mm9::chrX:5977194..5977227,+p4@Shroom4
Mm9::chrX:5977229..5977262,+p1@Shroom4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung4.89e-0914
respiratory tube4.89e-0914
respiration organ4.89e-0914
pair of lungs4.89e-0914
lung primordium4.89e-0914
lung bud4.89e-0914
epithelial fold6.15e-0920
thoracic cavity element1.33e-0817
thoracic segment organ1.33e-0817
thoracic cavity1.33e-0817
thoracic segment of trunk1.33e-0817
respiratory primordium1.33e-0817
endoderm of foregut1.33e-0817
epithelial bud6.00e-0817
urinary system structure4.07e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3757&oldid=2156129"