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MCL coexpression mm9:698: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000838!2.72e-11!12;CL:0002031!2.32e-10!25;CL:0000084!2.80e-10!11;CL:0000827!2.80e-10!11;CL:0000542!4.16e-10!13;CL:0000051!4.16e-10!13;CL:0000988!9.07e-10!32;CL:0002032!9.07e-10!32;CL:0000037!9.07e-10!32;CL:0000566!9.07e-10!32;CL:0000837!9.07e-10!32;CL:0000791!1.59e-09!9;CL:0000789!1.59e-09!9;CL:0002420!1.59e-09!9;CL:0002419!1.59e-09!9;CL:0000790!1.59e-09!9;CL:0000624!1.75e-08!8;CL:0000738!3.75e-08!17;CL:0002087!3.75e-08!17;CL:0002242!1.77e-07!16
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!2.68e-20!48;UBERON:0002405!2.68e-20!48;UBERON:0004177!3.26e-19!29;UBERON:0005057!3.26e-19!29;UBERON:0002390!5.51e-18!45;UBERON:0003061!5.51e-18!45;UBERON:0000077!2.51e-15!35;UBERON:0003408!2.59e-15!24;UBERON:0006562!1.09e-14!24;UBERON:0001557!1.09e-14!24;UBERON:0001042!1.09e-14!24;UBERON:0008814!1.09e-14!24;UBERON:0009145!1.09e-14!24;UBERON:0002370!1.77e-14!23;UBERON:0000974!1.77e-14!23;UBERON:0004807!1.77e-14!23;UBERON:0005058!1.77e-14!23;UBERON:0003351!1.77e-14!23;UBERON:0009113!1.77e-14!23;UBERON:0003295!1.77e-14!23;UBERON:0009722!1.77e-14!23;UBERON:0005562!1.77e-14!23;UBERON:0007690!1.77e-14!23;UBERON:0001004!3.98e-14!42;UBERON:0000065!2.23e-13!41;UBERON:0000072!3.21e-12!27;UBERON:0001041!6.29e-10!80;UBERON:0003081!4.55e-09!87;UBERON:0000063!7.04e-09!35;UBERON:0007811!1.83e-08!36;UBERON:0001007!3.35e-07!116;UBERON:0001555!3.35e-07!116;UBERON:0007026!3.35e-07!116;UBERON:0005911!6.43e-07!69;UBERON:0004119!7.45e-07!118;UBERON:0000925!7.45e-07!118;UBERON:0006595!7.45e-07!118
}}
}}

Revision as of 21:06, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:106611963..106611974,-p6@Pecam1
Mm9::chr1:175560944..175560965,+p2@Pyhin1
Mm9::chr1:36518841..36518852,+p@chr1:36518841..36518852
+
Mm9::chr1:87546602..87546617,+p2@Sp100
Mm9::chr1:87546619..87546627,+p3@Sp100
Mm9::chr4:134708909..134708939,+p3@Runx3
Mm9::chr5:64879091..64879112,+p@chr5:64879091..64879112
+
Mm9::chr6:48641353..48641381,+p@chr6:48641353..48641381
+
Mm9::chr7:113584594..113584612,-p1@Gm4759
Mm9::chr7:113584617..113584626,-p2@Gm4759


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.68e-2048
immune system2.68e-2048
hemopoietic organ3.26e-1929
immune organ3.26e-1929
hematopoietic system5.51e-1845
blood island5.51e-1845
mixed endoderm/mesoderm-derived structure2.51e-1535
gland of gut2.59e-1524
pharynx1.09e-1424
upper respiratory tract1.09e-1424
chordate pharynx1.09e-1424
pharyngeal arch system1.09e-1424
pharyngeal region of foregut1.09e-1424
thymus1.77e-1423
neck1.77e-1423
respiratory system epithelium1.77e-1423
hemolymphoid system gland1.77e-1423
pharyngeal epithelium1.77e-1423
thymic region1.77e-1423
pharyngeal gland1.77e-1423
entire pharyngeal arch endoderm1.77e-1423
thymus primordium1.77e-1423
early pharyngeal endoderm1.77e-1423
respiratory system3.98e-1442
respiratory tract2.23e-1341
segment of respiratory tract3.21e-1227
foregut6.29e-1080
lateral plate mesoderm4.55e-0987
organ segment7.04e-0935
craniocervical region1.83e-0836
digestive system3.35e-07116
digestive tract3.35e-07116
primitive gut3.35e-07116
endo-epithelium6.43e-0769
endoderm-derived structure7.45e-07118
endoderm7.45e-07118
presumptive endoderm7.45e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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