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Coexpression cluster:C204: Difference between revisions

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|full_id=C204_Smooth_nasal_CD4_CD19_CD8_CD14_CD34
|full_id=C204_Smooth_nasal_CD4_CD19_CD8_CD14_CD34
|id=C204
|id=C204
|ontology_enrichment_celltype=CL:0002057!1.07e-18!42;CL:0000860!9.50e-18!45;CL:0002031!1.97e-17!124;CL:0000738!5.32e-16!140;CL:0002087!1.36e-15!119;CL:0000037!2.16e-14!172;CL:0000566!2.16e-14!172;CL:0002032!1.07e-13!165;CL:0000837!1.07e-13!165;CL:0000003!1.52e-13!722;CL:0000988!1.23e-12!182;CL:0000839!3.07e-09!70;CL:0000012!5.29e-09!682;CL:0000557!6.63e-09!71;CL:0002009!6.99e-09!65;CL:0002194!2.32e-08!63;CL:0000576!2.32e-08!63;CL:0000040!2.32e-08!63;CL:0000559!2.32e-08!63;CL:0000838!2.81e-08!52;CL:0000034!3.06e-08!444;CL:0000548!4.31e-08!679;CL:0000004!4.31e-08!679;CL:0000255!4.31e-08!679;CL:0000542!5.20e-08!53;CL:0000051!5.20e-08!53;CL:0000144!7.82e-08!625;CL:0000766!3.22e-07!76;CL:0000048!5.05e-07!430;CL:0000723!5.71e-07!436;CL:0000763!7.71e-07!112;CL:0000049!7.71e-07!112
|ontology_enrichment_celltype=CL:0002539!3.81e-21!10;CL:0000359!1.18e-07!32
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002371!3.31e-09!80;UBERON:0001474!1.90e-08!86;UBERON:0004765!5.33e-08!101;UBERON:0001434!5.33e-08!101;UBERON:0002390!4.08e-07!102;UBERON:0003061!4.08e-07!102
|ontology_enrichment_uberon=UBERON:0004237!3.81e-21!10;UBERON:0004695!3.81e-21!10;UBERON:0002111!3.81e-21!10;UBERON:0004178!3.81e-21!10;UBERON:0001135!1.22e-14!15;UBERON:0000947!6.74e-11!21;UBERON:0010191!6.74e-11!21;UBERON:0004573!1.82e-07!33;UBERON:0004571!1.82e-07!33
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649017,0.474745,0.994932,0.966524,0.800397,0.583603,0.671671,0.529758,0.951167,0.770534,0.643061,0.68704,0.770441,0.982484,0.944924,0.878329,0.910397,0.974096,0.901412,0.999121,0.937702,0.609626,0.956886,0.382929,0.994729,0.993412,0.596246,0.905874,0.853537,0.903942,0.696395,0.986491,0.975551,0.716325,0.731049,0.997785,0.884457,0.619252,0.578231,0.972067,0.974377,0.999644,0.999858,0.402623,0.93426,0.385394,0.494041,0.870153,0.470626,0.768398,0.0628442,0.865202,0.968536,0.999993,0.996788,0.952615,0.993136,0.841463,0.974716,0.993875,0.970891,0.45602,0.718544,0.989117,0.485609,0.876333,0.999055,0.572978,0.989566,0.943172,0.610163,0.969494,0.560317,1,0.999892,0.982831,0.953669,0.797785,0.836805,0.949879,0.379325,0.486514,0.713428,0.33505,0.703276,0.80619,0.849615,0.961958,0.929921,0.631725,0.714434,0.33637,0.763304,0.822718,0.920868,0.868504,0.944016,0.63312,0.783583,0.821558,0.871864,0.992629,0.802413,0.919779,0.953758,0.527162,0.991704,0.957436,0.994457,0.926577,0.814155,0.474785,0.78736,0.997554,0.987773,0.577439,0.714022,0.801174,0.98261,0.795615,0.497482,0.987472,0.862484,0.657286,0.895761,0.903204,0.942034,0.873923,0.962933,0.897513,0.992685,0.818337,0.816333,0.783257,0.734215,0.925046,0.956824,0.999417,0.903735,0.934969,0.983224,0.541327,0.818029,0.489872,0.991597,0.706687,0.990388,0.950242,0.971947,0.889996,0.899637,0.987938,0.996511,0.998093,0.212444,0.859489,0.749902,0.881157,0.99155,0.992764,0.999999,0.615403,0.984076,0.974099,0.685023,0.975986,0.986451,0.953738,0.944763,0.492924,0.991643,0.996188,0.999178,0.845979,0.975287,0.971012,0.675732,0.976319,0.821588,0.959476,0.796563,0.994431,0.970692,0.956476,0.999863,0.988299,0.995794,0.985046,0.99761,0.999562,1,0.999974,0.90106,0.965436,0.999417,0.995372,0.765381,0.999135,0.998801,0.999783,0.993088,0.990566,0.996371,0.873411,0.998691,0.99781,0.906153,0.982653,0.65725,0.985575,0.994148,0.999996,0.988494,0.999997,0.999565,0.671464,0.999991,0.999825,0.999629,0.999998,0.981613,0.999999,0.972062,0.999999,0.999988,0.999998,0.703144,0.979722,0.847339,0.81856,0.982746,0.682658,0.867344,0.803669,0.282262,0.756166,0.964802,0.927801,0.857783,0.801022,0.990457,0.522392,0.964219,0.973699,0.999194,0.857761,0.419898,0.859482,0.999992,0.998509,0.993,0.990606,0.990479,0.94762,0.911906,0.999693,0.93807,0.861451,0.999505,0.997965,0.331337,0.938305,0.985748,0.998758,0.999974,0.99891,0.547672,0.987747,0.744911,0.999959,0.852435,0.924911,0.896042,0.988815,0.98765,0.876016,0.950375,0.997975,0.996737,0.997697,0.991428,0.959083,0.972384,0.946916,0.699197,0.703442,0.91649,0.920973,0.969376,0.685274,0.997836,0.999998,0.985066,0.974021,0.913566,0.985375,0.907119,0.996731,0.885944,0.997826,0.623644,0.966727,0.989505,0.999734,0.955926,0.994751,0.820326,0.974047,0.999657,0.999844,0.995993,0.990046,0.862502,0.99923,0.984662,0.850853,0.989125,0.952479,0.989666,0.998587,0.994219,0.989774,0.957563,0.924868,0.999663,0.96966,0.823045,0.993476,0.816665,0.999289,0.982322,0.567458,0.8786,0.997939,0.982265,0.590032,0.972703,0.951149,0.971651,0.577669,0.90042,0.838717,0.973707,0.990226,0.998405,0.940804,0.914065,0.265262,0.991115,0.871937,0.998267,0.879963,0.997636,0.969819,0.754222,0.975482,0.887471,0.892174,0.915871,0.986886,0.764202,0.926254,0.783892,0.446461,0.979138,0.577481,0.921673,0.668593,0.756222,0.962616,0.969785,0.410726,0.974119,0.983733,0.994848,0.890743,0.836735,0.983779,0.959297,0.818123,0.584739,0.964944,0.943695,0.964523,0.991814,0.639636,0.831028,0.751885,0.702449,0.961396,0.694906,0.967095,0.812115,0.964187,0.751535,0.798599,0.797424,0.756057,0.824858,0.956022,0.920284,0.264856,0.984126,0.985869,0.965188,0.989215,0.996177,0.985706,0.952432,0.667849,0.994993,0.900491,0.858015,0.162512,0.996671,0.934595,0.870128,0.940163,0.90679,0.996213,0.938824,0.829443,0.998657,0.994611,0.992842,0.929288,0.901985,0.820779,0.925809,0.934987,0.303743,0.507644,0.782243,0.956483,0.961486,0.929417,0.980628,0.996353,0.971419,0.953634,0.892603,0.372657,0.790896,0.761285,0.057999,0.985879,0.623439,0.293997,0.175283,0.871379,0.999625,0.86355,0.99551,0.913871,0.794257,0.88968,0.931776,0.249036,0.965961,0.82022,0.781012,0.265185,0.34016,0.872635,0.801698,0.690539,0.537688,0.912918,0.254448,0.890023,0.98181,0.994326,0.998501,0.98571,0.906477,0.999644,0.778386,0.830544,0.963194,0.951813,0.769495,0.574421,0.93296,0.996938,0.974613,0.832359,0.938267,0.517878,0.871023,0.97069,0.940956,0.959253,0.880729,0.786005,0.826776,0.494771,0.64414,0.971976,0.861877,0.94,0.947171,0.894998,0.723704,0.581449,0.990122,0.563304,0.736548,0.903284,0.968951,0.866432,0.988863,0.828764,0.853087,0.826744,0.523099,0.958373,0.960608,0.820597,0.874938,0.943775,0.997511,0.990387
}}
}}

Revision as of 12:00, 19 October 2012


Full id: C204_Smooth_nasal_CD4_CD19_CD8_CD14_CD34



Phase1 CAGE Peaks

Hg19::chr10:101875066..101875070,-p1@ENST00000436100
Hg19::chr10:104417630..104417634,+p24@TRIM8
Hg19::chr10:130274151..130274153,-p@chr10:130274151..130274153
-
Hg19::chr10:34953040..34953066,-p1@ENST00000411602
Hg19::chr10:44227705..44227736,+p1@UQCRHP3
Hg19::chr10:79742483..79742488,+p@chr10:79742483..79742488
+
Hg19::chr10:89603559..89603565,+p4@CFL1P1
Hg19::chr11:103342483..103342485,+p@chr11:103342483..103342485
+
Hg19::chr11:111333549..111333552,+p@chr11:111333549..111333552
+
Hg19::chr11:133725042..133725053,-p@chr11:133725042..133725053
-
Hg19::chr11:16632557..16632558,-p@chr11:16632557..16632558
-
Hg19::chr12:104680968..104680975,-p@chr12:104680968..104680975
-
Hg19::chr12:116030828..116030830,-p1@UBA52P7
Hg19::chr12:125420425..125420437,-p1@RPL22P19
Hg19::chr12:131245413..131245416,+p@chr12:131245413..131245416
+
Hg19::chr12:49161116..49161125,+p@chr12:49161116..49161125
+
Hg19::chr12:55852818..55852819,+p@chr12:55852818..55852819
+
Hg19::chr12:6379598..6379608,-p1@ENST00000537967
p1@ENST00000539998
Hg19::chr12:69078351..69078356,+p1@ENST00000481005
Hg19::chr13:110279492..110279493,+p@chr13:110279492..110279493
+
Hg19::chr13:28552375..28552395,-p@chr13:28552375..28552395
-
Hg19::chr13:32728128..32728129,+p@chr13:32728128..32728129
+
Hg19::chr13:45965544..45965564,-p4@RCN1P2
Hg19::chr13:85097171..85097193,+p@chr13:85097171..85097193
+
Hg19::chr13:92000895..92000896,+p@chr13:92000895..92000896
+
Hg19::chr14:100842679..100842681,+p12@WDR25
Hg19::chr14:104583053..104583055,-p@chr14:104583053..104583055
-
Hg19::chr14:55044887..55044888,+p@chr14:55044887..55044888
+
Hg19::chr15:40773537..40773544,-p1@ENST00000489027
Hg19::chr16:69373815..69373823,-p9@COG8
Hg19::chr18:21290255..21290263,-p1@ENST00000487872
Hg19::chr18:34964447..34964448,-p@chr18:34964447..34964448
-
Hg19::chr18:59541901..59541917,-p@chr18:59541901..59541917
-
Hg19::chr18:72057577..72057600,-p1@ENST00000474180
Hg19::chr1:120139867..120139873,-p1@GAPDHP33
Hg19::chr1:149114642..149114653,+p3@PFN1P12
Hg19::chr1:212225387..212225388,-p1@ENST00000327274
Hg19::chr1:247611515..247611534,-p@chr1:247611515..247611534
-
Hg19::chr1:25894569..25894574,+p@chr1:25894569..25894574
+
Hg19::chr1:55838358..55838367,-p1@ENST00000497619
Hg19::chr1:58515044..58515045,-p1@HNRNPA1P6
Hg19::chr1:91172633..91172644,-p@chr1:91172633..91172644
-
Hg19::chr20:13792868..13792873,-p@chr20:13792868..13792873
-
Hg19::chr20:17749112..17749114,+p@chr20:17749112..17749114
+
Hg19::chr20:43954844..43954850,-p@chr20:43954844..43954850
-
Hg19::chr20:47894852..47894860,-p25@ZNFX1
Hg19::chr22:19466669..19466670,+p5@CDC45
Hg19::chr22:31050822..31050824,-p1@ENST00000510957
Hg19::chr22:36571642..36571657,+p1@ENST00000439552
Hg19::chr22:41471250..41471272,-p1@ENST00000423293
Hg19::chr2:106870291..106870293,-p1@ENST00000436597
Hg19::chr2:47387602..47387612,-p@chr2:47387602..47387612
-
Hg19::chr2:71134479..71134487,+p@chr2:71134479..71134487
+
Hg19::chr3:140621021..140621025,+p1@ENST00000484754
Hg19::chr3:179370966..179370998,-p@chr3:179370966..179370998
-
Hg19::chr3:52227409..52227411,+p4@ALDOAP1
Hg19::chr3:89636109..89636112,-p@chr3:89636109..89636112
-
Hg19::chr4:155073946..155073948,-p@chr4:155073946..155073948
-
Hg19::chr4:84423781..84423782,+p1@ENST00000494923
Hg19::chr5:1037457..1037459,+p@chr5:1037457..1037459
+
Hg19::chr5:175843190..175843195,+p@chr5:175843190..175843195
+
Hg19::chr5:180100953..180100958,-p@chr5:180100953..180100958
-
Hg19::chr5:5807221..5807229,+p@chr5:5807221..5807229
+
Hg19::chr6:119590894..119590904,-p1@ENST00000406333
Hg19::chr7:133000192..133000196,-p1@ENST00000419509
Hg19::chr7:1906143..1906144,-p@chr7:1906143..1906144
-
Hg19::chr7:2700849..2700851,+p53@TTYH3
Hg19::chr7:33574446..33574447,+p@chr7:33574446..33574447
+
Hg19::chr7:4462090..4462094,+p@chr7:4462090..4462094
+
Hg19::chr7:49743079..49743080,-p@chr7:49743079..49743080
-
Hg19::chr7:63889330..63889331,-p@chr7:63889330..63889331
-
Hg19::chr8:30209368..30209381,+p2@TUBBP1
Hg19::chr9:130159593..130159600,+p9@SLC2A8
Hg19::chr9:37637329..37637363,-p3@RAB1C
Hg19::chr9:82591919..82591920,-p@chr9:82591919..82591920
-
Hg19::chrX:151214741..151214745,-p1@ENST00000415403
Hg19::chrX:25013587..25013595,+p@chrX:25013587..25013595
+
Hg19::chrX:6340807..6340814,-p1@ENST00000437297


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
aortic smooth muscle cell3.81e-2110
vascular associated smooth muscle cell1.18e-0732
Uber Anatomy
Ontology termp-valuen
blood vessel smooth muscle3.81e-2110
arterial system smooth muscle3.81e-2110
artery smooth muscle tissue3.81e-2110
aorta smooth muscle tissue3.81e-2110
smooth muscle tissue1.22e-1415
aorta6.74e-1121
aortic system6.74e-1121
systemic artery1.82e-0733
systemic arterial system1.82e-0733


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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