FFCP PHASE1:Hg19::chr14:60194347..60194365,-: Difference between revisions
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001893!3.21e-50!34;UBERON:0002020!3.67e-50!34;UBERON:0003528!3.67e-50!34;UBERON:0002780!3.18e-48!41;UBERON:0001890!3.18e-48!41;UBERON:0006240!3.18e-48!41;UBERON:0001049!9.32e-48!57;UBERON:0005068!9.32e-48!57;UBERON:0006241!9.32e-48!57;UBERON:0007135!9.32e-48!57;UBERON:0002791!1.69e-47!33;UBERON:0003080!6.17e-47!42;UBERON:0002616!6.90e-46!59;UBERON:0001869!3.78e-45!32;UBERON:0002619!8.21e-45!22;UBERON:0000955!5.51e-43!69;UBERON:0006238!5.51e-43!69;UBERON:0001017!1.13e-42!82;UBERON:0005743!2.63e-40!86;UBERON:0000956!4.49e-39!25;UBERON:0000203!4.49e-39!25;UBERON:0001950!1.37e-38!20;UBERON:0000073!6.55e-38!94;UBERON:0001016!6.55e-38!94;UBERON:0007023!2.28e-34!115;UBERON:0003075!1.68e-33!86;UBERON:0007284!1.68e-33!86;UBERON:0002346!1.20e-31!90;UBERON:0003056!2.23e-30!61;UBERON:0000033!6.52e-24!123;UBERON:0000153!2.09e-22!129;UBERON:0007811!2.09e-22!129;UBERON:0000200!7.25e-20!6;UBERON:0004121!1.64e-18!169;UBERON:0000349!4.53e-18!5;UBERON:0000924!7.09e-18!173;UBERON:0006601!7.09e-18!173;UBERON:0001871!3.47e-15!7;UBERON:0002420!3.44e-13!9;UBERON:0007245!3.44e-13!9;UBERON:0010009!3.44e-13!9;UBERON:0010011!3.44e-13!9;UBERON:0000454!3.44e-13!9;UBERON:0002308!2.27e-12!9;UBERON:0000125!2.27e-12!9;UBERON:0000025!2.79e-12!194;UBERON:0001872!3.59e-11!5;UBERON:0002771!1.52e-10!3;UBERON:0006331!6.30e-10!3;UBERON:0002298!2.20e-09!8;UBERON:0004111!5.13e-09!241;UBERON:0001876!2.00e-08!2;UBERON:0001870!2.22e-08!2;UBERON:0001954!2.94e-08!2;UBERON:0003022!2.94e-08!2;UBERON:0002421!2.94e-08!2;UBERON:0002600!2.94e-08!2;UBERON:0009663!1.06e-07!7;UBERON:0000477!1.49e-07!286;UBERON:0002360!1.83e-07!2;UBERON:0000094!1.83e-07!2;UBERON:0007645!1.83e-07!2;UBERON:0002148!4.00e-07!2;UBERON:0009662!4.00e-07!2;UBERON:0000064!5.82e-07!219 | |ontology_enrichment_uberon=UBERON:0001893!3.21e-50!34;UBERON:0002020!3.67e-50!34;UBERON:0003528!3.67e-50!34;UBERON:0002780!3.18e-48!41;UBERON:0001890!3.18e-48!41;UBERON:0006240!3.18e-48!41;UBERON:0001049!9.32e-48!57;UBERON:0005068!9.32e-48!57;UBERON:0006241!9.32e-48!57;UBERON:0007135!9.32e-48!57;UBERON:0002791!1.69e-47!33;UBERON:0003080!6.17e-47!42;UBERON:0002616!6.90e-46!59;UBERON:0001869!3.78e-45!32;UBERON:0002619!8.21e-45!22;UBERON:0000955!5.51e-43!69;UBERON:0006238!5.51e-43!69;UBERON:0001017!1.13e-42!82;UBERON:0005743!2.63e-40!86;UBERON:0000956!4.49e-39!25;UBERON:0000203!4.49e-39!25;UBERON:0001950!1.37e-38!20;UBERON:0000073!6.55e-38!94;UBERON:0001016!6.55e-38!94;UBERON:0007023!2.28e-34!115;UBERON:0003075!1.68e-33!86;UBERON:0007284!1.68e-33!86;UBERON:0002346!1.20e-31!90;UBERON:0003056!2.23e-30!61;UBERON:0000033!6.52e-24!123;UBERON:0000153!2.09e-22!129;UBERON:0007811!2.09e-22!129;UBERON:0000200!7.25e-20!6;UBERON:0004121!1.64e-18!169;UBERON:0000349!4.53e-18!5;UBERON:0000924!7.09e-18!173;UBERON:0006601!7.09e-18!173;UBERON:0001871!3.47e-15!7;UBERON:0002420!3.44e-13!9;UBERON:0007245!3.44e-13!9;UBERON:0010009!3.44e-13!9;UBERON:0010011!3.44e-13!9;UBERON:0000454!3.44e-13!9;UBERON:0002308!2.27e-12!9;UBERON:0000125!2.27e-12!9;UBERON:0000025!2.79e-12!194;UBERON:0001872!3.59e-11!5;UBERON:0002771!1.52e-10!3;UBERON:0006331!6.30e-10!3;UBERON:0002298!2.20e-09!8;UBERON:0004111!5.13e-09!241;UBERON:0001876!2.00e-08!2;UBERON:0001870!2.22e-08!2;UBERON:0001954!2.94e-08!2;UBERON:0003022!2.94e-08!2;UBERON:0002421!2.94e-08!2;UBERON:0002600!2.94e-08!2;UBERON:0009663!1.06e-07!7;UBERON:0000477!1.49e-07!286;UBERON:0002360!1.83e-07!2;UBERON:0000094!1.83e-07!2;UBERON:0007645!1.83e-07!2;UBERON:0002148!4.00e-07!2;UBERON:0009662!4.00e-07!2;UBERON:0000064!5.82e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.31e-30;20!UBERON:0002619;5.02e-28;22!UBERON:0000200;2.72e-27;6!UBERON:0000956;6.80e-25;25!UBERON:0000203;6.80e-25;25!UBERON:0001871;1.80e-23;6!UBERON:0002702;3.81e-21;2!UBERON:0002771;5.69e-21;2!UBERON:0001876;5.69e-21;2!UBERON:0002791;8.68e-21;32!UBERON:0001869;8.68e-21;32!UBERON:0001893;1.94e-17;34!UBERON:0003528;1.21e-15;34!UBERON:0002020;1.21e-15;34!UBERON:0001870;1.40e-14;3!UBERON:0002780;6.46e-12;41!UBERON:0001890;6.46e-12;41!UBERON:0002021;3.22e-09;5!UBERON:0000349;3.22e-09;5!UBERON:0000073;1.04e-08;53!UBERON:0002616;1.04e-08;53 | |ontology_enrichment_uberon_v019=UBERON:0001950;1.31e-30;20!UBERON:0002619;5.02e-28;22!UBERON:0000200;2.72e-27;6!UBERON:0000956;6.80e-25;25!UBERON:0000203;6.80e-25;25!UBERON:0001871;1.80e-23;6!UBERON:0002702;3.81e-21;2!UBERON:0002771;5.69e-21;2!UBERON:0001876;5.69e-21;2!UBERON:0002791;8.68e-21;32!UBERON:0001869;8.68e-21;32!UBERON:0001893;1.94e-17;34!UBERON:0003528;1.21e-15;34!UBERON:0002020;1.21e-15;34!UBERON:0001870;1.40e-14;3!UBERON:0002780;6.46e-12;41!UBERON:0001890;6.46e-12;41!UBERON:0002021;3.22e-09;5!UBERON:0000349;3.22e-09;5!UBERON:0000073;1.04e-08;53!UBERON:0002616;1.04e-08;53 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.31e-30,20;UBERON:0002619,5.02e-28,22;UBERON:0000200,2.38e-27,6;UBERON:0000956,6.80e-25,25;UBERON:0000203,6.80e-25,25;UBERON:0001871,1.61e-23,6;UBERON:0002702,3.81e-21,2;UBERON:0002771,4.66e-21,2;UBERON:0001876,5.70e-21,2;UBERON:0002791,8.59e-20,32;UBERON:0001869,8.59e-20,32;UBERON:0003528,1.04e-18,34;UBERON:0002020,1.04e-18,34;UBERON:0001893,1.04e-18,34;UBERON:0002780,1.01e-15,41;UBERON:0001890,1.01e-15,41;UBERON:0003080,1.01e-15,41;UBERON:0006240,1.01e-15,41;UBERON:0001870,1.40e-14,3;UBERON:0000073,2.17e-12,53;UBERON:0002616,2.17e-12,53;UBERON:0001049,8.95e-12,56;UBERON:0005068,8.95e-12,56;UBERON:0006241,8.95e-12,56;UBERON:0007135,8.95e-12,56;UBERON:0003056,7.02e-11,61;UBERON:0000955,1.03e-09,68;UBERON:0006238,1.03e-09,68;UBERON:0000349,3.22e-09,5;UBERON:0002021,3.49e-09,5;UBERON:0001017,2.75e-08,81;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0002346,6.20e-08,86;UBERON:0001016,1.56e-07,89 | |||
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|short_description=p17@RTN1 | |short_description=p17@RTN1 | ||
}} | }} |
Revision as of 13:13, 17 November 2012
Short description: | p17@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_RTN1_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 65bp_to_ENST00000432103, uc001xem.1_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q16799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.31e-30 | 20 |
regional part of cerebral cortex | 5.02e-28 | 22 |
gyrus | 2.38e-27 | 6 |
cerebral cortex | 6.80e-25 | 25 |
pallium | 6.80e-25 | 25 |
temporal lobe | 1.61e-23 | 6 |
middle frontal gyrus | 3.81e-21 | 2 |
middle temporal gyrus | 4.66e-21 | 2 |
amygdala | 5.70e-21 | 2 |
regional part of telencephalon | 8.59e-20 | 32 |
cerebral hemisphere | 8.59e-20 | 32 |
brain grey matter | 1.04e-18 | 34 |
gray matter | 1.04e-18 | 34 |
telencephalon | 1.04e-18 | 34 |
regional part of forebrain | 1.01e-15 | 41 |
forebrain | 1.01e-15 | 41 |
anterior neural tube | 1.01e-15 | 41 |
future forebrain | 1.01e-15 | 41 |
frontal cortex | 1.40e-14 | 3 |
regional part of nervous system | 2.17e-12 | 53 |
regional part of brain | 2.17e-12 | 53 |
neural tube | 8.95e-12 | 56 |
neural rod | 8.95e-12 | 56 |
future spinal cord | 8.95e-12 | 56 |
neural keel | 8.95e-12 | 56 |
pre-chordal neural plate | 7.02e-11 | 61 |
brain | 1.03e-09 | 68 |
future brain | 1.03e-09 | 68 |
limbic system | 3.22e-09 | 5 |
occipital lobe | 3.49e-09 | 5 |
central nervous system | 2.75e-08 | 81 |
neural plate | 2.75e-08 | 82 |
presumptive neural plate | 2.75e-08 | 82 |
neurectoderm | 6.20e-08 | 86 |
nervous system | 1.56e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.