FFCP PHASE1:Hg19::chr7:142028105..142028159,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000791!1.10e-24!18;CL:0000789!1.10e-24!18;CL:0002420!1.10e-24!18;CL:0002419!1.10e-24!18;CL:0000790!1.10e-24!18;CL:0000625!1.27e-17!11;CL:0000084!3.97e-16!25;CL:0000827!3.97e-16!25;CL:0000738!2.00e-14!140;CL:0002087!2.19e-12!119;CL:0000624!1.72e-10!6;CL:0000838!1.74e-09!52;CL:0000542!3.48e-09!53;CL:0000051!3.48e-09!53;CL:0000037!3.69e-09!172;CL:0000566!3.69e-09!172;CL:0002031!3.94e-09!124;CL:0000988!5.92e-08!182;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165 | |ontology_enrichment_celltype=CL:0000791!1.10e-24!18;CL:0000789!1.10e-24!18;CL:0002420!1.10e-24!18;CL:0002419!1.10e-24!18;CL:0000790!1.10e-24!18;CL:0000625!1.27e-17!11;CL:0000084!3.97e-16!25;CL:0000827!3.97e-16!25;CL:0000738!2.00e-14!140;CL:0002087!2.19e-12!119;CL:0000624!1.72e-10!6;CL:0000838!1.74e-09!52;CL:0000542!3.48e-09!53;CL:0000051!3.48e-09!53;CL:0000037!3.69e-09!172;CL:0000566!3.69e-09!172;CL:0002031!3.94e-09!124;CL:0000988!5.92e-08!182;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.45e-42;18!CL:0000789;1.45e-42;18!CL:0002419;1.45e-42;18!CL:0000625;9.76e-30;11!CL:0000084;2.76e-29;25!CL:0000624;3.44e-17;6!CL:0000898;6.11e-10;3!CL:0000542;1.31e-08;53!CL:0000226;1.43e-08;3!CL:0000842;1.43e-08;3!CL:0000623;1.70e-08;3!CL:0000815;3.04e-07;2!CL:0000792;3.04e-07;2!CL:0002677;3.04e-07;2 | |ontology_enrichment_celltype_v019=CL:0000791;1.45e-42;18!CL:0000789;1.45e-42;18!CL:0002419;1.45e-42;18!CL:0000625;9.76e-30;11!CL:0000084;2.76e-29;25!CL:0000624;3.44e-17;6!CL:0000898;6.11e-10;3!CL:0000542;1.31e-08;53!CL:0000226;1.43e-08;3!CL:0000842;1.43e-08;3!CL:0000623;1.70e-08;3!CL:0000815;3.04e-07;2!CL:0000792;3.04e-07;2!CL:0002677;3.04e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.47e-42,18;CL:0000789,1.47e-42,18;CL:0002420,1.47e-42,18;CL:0002419,1.47e-42,18;CL:0000790,1.47e-42,18;CL:0000625,1.00e-29,11;CL:0000084,2.78e-29,25;CL:0000827,2.78e-29,25;CL:0000624,3.39e-17,6;CL:0000838,1.35e-16,52;CL:0000542,3.51e-16,53;CL:0000051,3.51e-16,53;CL:0000898,6.12e-10,3;CL:0002087,3.22e-09,115;CL:0000738,4.09e-09,136;CL:0000226,1.49e-08,3;CL:0000842,1.49e-08,3;CL:0000623,1.79e-08,3;CL:0000825,1.79e-08,3;CL:0000815,3.04e-07,2;CL:0000792,3.04e-07,2;CL:0002677,3.04e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.45e-42;18!CL:0000051;1.31e-08;53 | |ontology_enrichment_development_v019=CL:0000790;1.45e-42;18!CL:0000051;1.31e-08;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.56e-15!115;UBERON:0000178!2.22e-13!15;UBERON:0000179!2.22e-13!15;UBERON:0000463!2.22e-13!15;UBERON:0002390!5.74e-09!102;UBERON:0003061!5.74e-09!102;UBERON:0002193!1.06e-08!112 | |ontology_enrichment_uberon=UBERON:0007023!2.56e-15!115;UBERON:0000178!2.22e-13!15;UBERON:0000179!2.22e-13!15;UBERON:0000463!2.22e-13!15;UBERON:0002390!5.74e-09!102;UBERON:0003061!5.74e-09!102;UBERON:0002193!1.06e-08!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.33e-23;15!UBERON:0000179;3.33e-23;15!UBERON:0000463;3.33e-23;15!UBERON:0002390;3.63e-16;32!UBERON:0002193;2.78e-11;42!UBERON:0004177;3.17e-09;5!UBERON:0005057;3.17e-09;5!UBERON:0002370;2.33e-07;2!UBERON:0005058;2.33e-07;2!UBERON:0009113;2.33e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000178;3.33e-23;15!UBERON:0000179;3.33e-23;15!UBERON:0000463;3.33e-23;15!UBERON:0002390;3.63e-16;32!UBERON:0002193;2.78e-11;42!UBERON:0004177;3.17e-09;5!UBERON:0005057;3.17e-09;5!UBERON:0002370;2.33e-07;2!UBERON:0005058;2.33e-07;2!UBERON:0009113;2.33e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.33e-23,15;UBERON:0000179,3.33e-23,15;UBERON:0000463,3.33e-23,15;UBERON:0004177,4.75e-10,7;UBERON:0005057,4.75e-10,7;UBERON:0002370,1.31e-07,4;UBERON:0005058,1.31e-07,4;UBERON:0009113,1.31e-07,4;UBERON:0003295,1.31e-07,4;UBERON:0005562,1.31e-07,4;UBERON:0003408,7.83e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,2.30297638858328,0.619264493264304,0,0,0,0,0,0,2.76997704265939,1.00272223735071,0.868043482863407,0.223915474239924,3.88672399222775,0.77272670290256,0,0,0,0.232429036905685,0,0,0,0.768482119587302,0,0,0.645484683583826,0,0,0.818718450173537,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0.199463657621632,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,0,2.24203425192614,0,13.7696839079683,15.3274197472174,27.3449993669347,43.9700482877483,48.562417728405,39.7696156817176,40.9136129656614,43.8957200127584,61.572634662241,56.9342109079906,53.8899688892381,29.2048208974539,23.540741908338,46.8648028120477,54.9936535393838,66.6547097190621,40.3339451800804,34.2452259954833,33.4513676175926,34.5593495227577,42.5374747898133,40.891666012433,36.1818159587889,40.4578076191603,37.1117568698159,44.6712460890736,37.1920544122099,37.628063679399,43.7257542933211,33.6223697902504,38.5930158552892,41.9342025907443,6.41856469880418,9.41358625238193,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0.174129737299267,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3387068977696,6.253199670926,3.46526197955321,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4399216979877,5.60856922128404,8.11129439306177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,12.6861902308042,10.7049208999933,9.68400218196076,14.7703700783829,13.9863172849306,11.0240462902762,12.9607544937148,13.4831279970026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.97311047956066,0,0,0,0,0,0,0,0.690503839458535,11.974154617347,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.22206028986725,0,0,0,0.202203398942031,0,0,0,0,0,0,4.83962864194656,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.640724475406168,0.157204305099666,0.828478110694391,3.47316215268366,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,4.68334905806882,4.0577888011031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.398594520940089,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,2.19303106742873,0,0,0,0,0,0,0.227662191351298,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,2.05417695252545,0,0,0,0,0,0,1.72090943528111,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0.439762066981716,0,1.389134845943,0.218559560503957,0,0,0,0,0,0,0,2.53756578545605,3.48072595057317,0,0,0,0,0,0,0,0,0.0679914901909147,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,4.76128862927481,198.998431204735,133.336486307503,0,0,0,0.653150243690884,0,7.40872583160463,1.00411087549747,0,0,0,0,0,0,0.366724332548599,0,0,29.7885214514719,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,2.30297638858328,0.619264493264304,0,0,0,0,0,0,2.76997704265939,1.00272223735071,0.868043482863407,0.223915474239924,3.88672399222775,0.77272670290256,0,0,0,0.232429036905685,0,0,0,0.768482119587302,0,0,0.645484683583826,0,0,0.818718450173537,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0.199463657621632,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,0,2.24203425192614,0,13.7696839079683,15.3274197472174,27.3449993669347,43.9700482877483,48.562417728405,39.7696156817176,40.9136129656614,43.8957200127584,61.572634662241,56.9342109079906,53.8899688892381,29.2048208974539,23.540741908338,46.8648028120477,54.9936535393838,66.6547097190621,40.3339451800804,34.2452259954833,33.4513676175926,34.5593495227577,42.5374747898133,40.891666012433,36.1818159587889,40.4578076191603,37.1117568698159,44.6712460890736,37.1920544122099,37.628063679399,43.7257542933211,33.6223697902504,38.5930158552892,41.9342025907443,6.41856469880418,9.41358625238193,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0.174129737299267,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3387068977696,6.253199670926,3.46526197955321,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4399216979877,5.60856922128404,8.11129439306177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,12.6861902308042,10.7049208999933,9.68400218196076,14.7703700783829,13.9863172849306,11.0240462902762,12.9607544937148,13.4831279970026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.97311047956066,0,0,0,0,0,0,0,0.690503839458535,11.974154617347,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.22206028986725,0,0,0,0.202203398942031,0,0,0,0,0,0,4.83962864194656,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.640724475406168,0.157204305099666,0.828478110694391,3.47316215268366,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,4.68334905806882,4.0577888011031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.398594520940089,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,2.19303106742873,0,0,0,0,0,0,0.227662191351298,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,2.05417695252545,0,0,0,0,0,0,1.72090943528111,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0.439762066981716,0,1.389134845943,0.218559560503957,0,0,0,0,0,0,0,2.53756578545605,3.48072595057317,0,0,0,0,0,0,0,0,0.0679914901909147,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,4.76128862927481,198.998431204735,133.336486307503,0,0,0,0.653150243690884,0,7.40872583160463,1.00411087549747,0,0,0,0,0,0,0.366724332548599,0,0,29.7885214514719,0 | ||
|short_description=p1@TRBV6-1 | |short_description=p1@TRBV6-1 | ||
}} | }} |
Revision as of 10:43, 18 November 2012
Short description: | p1@TRBV6-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRBV6-1_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 0bp_to_ENST00000390353_5end |
EntrezGene: | NA |
HGNC: | 12226 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.47e-42 | 18 |
alpha-beta T cell | 1.47e-42 | 18 |
immature T cell | 1.47e-42 | 18 |
mature T cell | 1.47e-42 | 18 |
immature alpha-beta T cell | 1.47e-42 | 18 |
CD8-positive, alpha-beta T cell | 1.00e-29 | 11 |
T cell | 2.78e-29 | 25 |
pro-T cell | 2.78e-29 | 25 |
CD4-positive, alpha-beta T cell | 3.39e-17 | 6 |
lymphoid lineage restricted progenitor cell | 1.35e-16 | 52 |
lymphocyte | 3.51e-16 | 53 |
common lymphoid progenitor | 3.51e-16 | 53 |
naive T cell | 6.12e-10 | 3 |
nongranular leukocyte | 3.22e-09 | 115 |
leukocyte | 4.09e-09 | 136 |
single nucleate cell | 1.49e-08 | 3 |
mononuclear cell | 1.49e-08 | 3 |
natural killer cell | 1.79e-08 | 3 |
pro-NK cell | 1.79e-08 | 3 |
regulatory T cell | 3.04e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.04e-07 | 2 |
naive regulatory T cell | 3.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 3.33e-23 | 15 |
haemolymphatic fluid | 3.33e-23 | 15 |
organism substance | 3.33e-23 | 15 |
hemopoietic organ | 4.75e-10 | 7 |
immune organ | 4.75e-10 | 7 |
thymus | 1.31e-07 | 4 |
hemolymphoid system gland | 1.31e-07 | 4 |
thymic region | 1.31e-07 | 4 |
pharyngeal gland | 1.31e-07 | 4 |
thymus primordium | 1.31e-07 | 4 |
gland of gut | 7.83e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.