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MCL coexpression mm9:137: Difference between revisions

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|ontology_enrichment_disease=DOID:0060100!2.34e-07!3;DOID:4045!2.34e-07!3
|ontology_enrichment_disease=DOID:0060100!2.34e-07!3;DOID:4045!2.34e-07!3
|ontology_enrichment_uberon=UBERON:0002384!6.30e-12!46;UBERON:0000485!2.91e-09!11;UBERON:0003350!5.57e-09!9;UBERON:0004808!5.57e-09!9;UBERON:0001277!5.57e-09!9
|ontology_enrichment_uberon=UBERON:0002384!6.30e-12!46;UBERON:0000485!2.91e-09!11;UBERON:0003350!5.57e-09!9;UBERON:0004808!5.57e-09!9;UBERON:0001277!5.57e-09!9
|tfbs_overrepresentation_for_novel_motifs=0.33588,0.241475,0.851122,0.278262,0.0756143,0.168795,0.316102,0.0244883,1.65662,0.146249,0.113816,0.293966,0.413772,0.569278,0.270545,0,0.794651,0.12299,0.918204,0.160103,1.14742,1.22169,0.0643812,0.842161,0.65252,0.0176116,0.208161,0.356131,0.233725,0.132074,1.04893,0.651782,0.197757,0.295535,1.49992,0.0287324,0.175394,0.287466,0.128761,0.917079,0.129773,0.535364,0.263237,0.173402,0.623766,0.63062,0.323702,0.616821,0.821158,0.371166,0.747588,0.238593,1.35619,0.166029,0.175998,0.35339,0.158174,0.71913,0.349948,0.349381,0.293192,0.472796,0.400818,1.10482,0.0745926,0.478358,0.262143,0.533111,0.601895,0.411902,0.22913,0.748434,0.131766,0.195869,0.0353808,0.73995,0.056882,0.560933,0.274118,0.0517778,0.45256,0.488631,0.101493,0.503486,0.411198,0.132765,0.00645678,1.26107,0.942416,0.675001,0.836989,0.417657,0.678177,0.00510981,0.121045,0.230773,0.680823,0.684014,0.138547,1.52662,0.10432,0.315815,0.921824,0.192237,0.425415,0.533954,0.911206,0.872022,0.210633,0.195957,1.2452,1.48139,0.329103,1.67362,0.848501,0.126639,0.0765899,0.464685,0.798199,0.524416,0.199153,0.162973,0.206133,0.128881,0.356589,0.584476,0.331531,0.0979203,2.8637,0.248221,0.147133,0.140568,0.241295,0.380739,0.332187,0.0167863,0.213016,0.338852,0.803703,1.01733,0.646575,0.265361,0.423704,0.328423,0.729167,0.784992,0.328546,0.979551,0.364383,0.22863,0.37387,0.0484124,0.166915,0.831661,0.194476,0.215846,0.239945,0.828245,0.0406734,1.34902,0.819083,0.814387,0.987074,0.182313,0.182306,0.363932,0.538171,0.143162,2.14074
}}
}}

Revision as of 17:51, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:67000133..67000144,-p@chr10:67000133..67000144
-
Mm9::chr10:79538327..79538350,+p@chr10:79538327..79538350
+
Mm9::chr10:94407469..94407496,-p1@Plxnc1
Mm9::chr10:94407499..94407525,-p3@Plxnc1
Mm9::chr11:115138735..115138743,+p@chr11:115138735..115138743
+
Mm9::chr11:30671660..30671679,-p@chr11:30671660..30671679
-
Mm9::chr11:68666797..68666842,+p@chr11:68666797..68666842
+
Mm9::chr11:68667555..68667558,-p@chr11:68667555..68667558
-
Mm9::chr11:68911233..68911246,+p@chr11:68911233..68911246
+
Mm9::chr11:69223272..69223281,+p@chr11:69223272..69223281
+
Mm9::chr11:69223300..69223314,+p@chr11:69223300..69223314
+
Mm9::chr11:69223898..69223934,-p@chr11:69223898..69223934
-
Mm9::chr11:69224053..69224084,+p@chr11:69224053..69224084
+
Mm9::chr11:87031216..87031260,-p@chr11:87031216..87031260
-
Mm9::chr11:93856674..93856698,+p@chr11:93856674..93856698
+
Mm9::chr11:93857095..93857128,-p@chr11:93857095..93857128
-
Mm9::chr12:70784685..70784698,-p@chr12:70784685..70784698
-
Mm9::chr12:80397424..80397437,+p@chr12:80397424..80397437
+
Mm9::chr12:8506807..8506823,-p1@Rhob
Mm9::chr12:86814833..86814846,+p1@Fos
Mm9::chr12:86818215..86818223,-p@chr12:86818215..86818223
-
Mm9::chr12:86826741..86826757,-p@chr12:86826741..86826757
-
Mm9::chr12:86826930..86826944,-p@chr12:86826930..86826944
-
Mm9::chr12:86827179..86827199,+p@chr12:86827179..86827199
+
Mm9::chr13:111328639..111328642,+p@chr13:111328639..111328642
+
Mm9::chr13:114660879..114660896,+p@chr13:114660879..114660896
+
Mm9::chr13:60839512..60839523,+p@chr13:60839512..60839523
+
Mm9::chr14:47441705..47441736,-p@chr14:47441705..47441736
-
Mm9::chr14:76234296..76234319,+p@chr14:76234296..76234319
+
Mm9::chr15:102235935..102235952,-p@chr15:102235935..102235952
-
Mm9::chr15:78279810..78279816,+p@chr15:78279810..78279816
+
Mm9::chr16:35939947..35939958,+p@chr16:35939947..35939958
+
Mm9::chr17:17975421..17975439,+p@chr17:17975421..17975439
+
Mm9::chr17:27962982..27962989,-p@chr17:27962982..27962989
-
Mm9::chr17:35188770..35188792,-p@chr17:35188770..35188792
-
Mm9::chr18:4353059..4353070,+p1@4833419F23Rik
Mm9::chr18:4353606..4353629,+p1@uc008dyg.1
Mm9::chr19:5802809..5802814,+p@chr19:5802809..5802814
+
Mm9::chr19:5846865..5846886,+p@chr19:5846865..5846886
+
Mm9::chr19:5846964..5846989,+p@chr19:5846964..5846989
+
Mm9::chr19:60657149..60657166,+p@chr19:60657149..60657166
+
Mm9::chr1:135996014..135996060,+p@chr1:135996014..135996060
+
Mm9::chr1:155596836..155596876,+p@chr1:155596836..155596876
+
Mm9::chr1:156992980..156992985,+p@chr1:156992980..156992985
+
Mm9::chr1:157884525..157884544,-p@chr1:157884525..157884544
-
Mm9::chr1:182333874..182333879,-p@chr1:182333874..182333879
-
Mm9::chr1:186556663..186556683,+p@chr1:186556663..186556683
+
Mm9::chr1:193048790..193048848,-p@chr1:193048790..193048848
-
Mm9::chr1:36365112..36365126,+p@chr1:36365112..36365126
+
Mm9::chr1:66862781..66862793,+p@chr1:66862781..66862793
+
Mm9::chr2:154483708..154483724,-p@chr2:154483708..154483724
-
Mm9::chr2:167415048..167415059,+p@chr2:167415048..167415059
+
Mm9::chr2:29682546..29682564,-p@chr2:29682546..29682564
-
Mm9::chr4:100964854..100964883,+p@chr4:100964854..100964883
+
Mm9::chr4:135432842..135432855,+p@chr4:135432842..135432855
+
Mm9::chr4:143002905..143002917,+p2@Pramef8
Mm9::chr4:151236286..151236328,+p@chr4:151236286..151236328
+
Mm9::chr4:94719548..94719564,+p3@ENSMUST00000125917
Mm9::chr5:115950651..115950658,+p@chr5:115950651..115950658
+
Mm9::chr5:125873365..125873385,-p@chr5:125873365..125873385
-
Mm9::chr5:139960635..139960675,+p@chr5:139960635..139960675
+
Mm9::chr5:24083536..24083578,+p@chr5:24083536..24083578
+
Mm9::chr6:134741498..134741518,+p@chr6:134741498..134741518
+
Mm9::chr6:28371527..28371542,-p3@Gcc1
Mm9::chr6:28371564..28371592,-p2@Gcc1
Mm9::chr6:29222492..29222506,-p@chr6:29222492..29222506
-
Mm9::chr7:108599890..108599904,+p4@Pde2a
Mm9::chr7:20401962..20401980,+p2@ENSMUST00000137373
Mm9::chr7:20403066..20403081,+p@chr7:20403066..20403081
+
Mm9::chr7:29157949..29157990,+p@chr7:29157949..29157990
+
Mm9::chr7:29166311..29166316,-p@chr7:29166311..29166316
-
Mm9::chr8:11476989..11477002,+p@chr8:11476989..11477002
+
Mm9::chr8:11477004..11477016,+p@chr8:11477004..11477016
+
Mm9::chr8:11477018..11477030,+p@chr8:11477018..11477030
+
Mm9::chr8:73134289..73134311,+p@chr8:73134289..73134311
+
Mm9::chr8:73197637..73197658,+p@chr8:73197637..73197658
+
Mm9::chr8:74792504..74792517,+p@chr8:74792504..74792517
+
Mm9::chr8:86721574..86721579,-p@chr8:86721574..86721579
-
Mm9::chr8:86725665..86725692,+p@chr8:86725665..86725692
+
Mm9::chr8:87500645..87500656,+p@chr8:87500645..87500656
+
Mm9::chr9:121223398..121223435,+p@chr9:121223398..121223435
+
Mm9::chr9:121627976..121628010,-p@chr9:121627976..121628010
-
Mm9::chr9:65427027..65427038,+p@chr9:65427027..65427038
+
Mm9::chrX:163527091..163527099,+p@chrX:163527091..163527099
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell4.98e-1532
hematopoietic oligopotent progenitor cell4.98e-1532
hematopoietic stem cell4.98e-1532
angioblastic mesenchymal cell4.98e-1532
hematopoietic multipotent progenitor cell4.98e-1532
connective tissue cell6.30e-1246
mesenchymal cell6.30e-1246
stem cell7.63e-1297
lymphoid lineage restricted progenitor cell1.35e-1112
lymphocyte1.48e-1013
common lymphoid progenitor1.48e-1013
motile cell1.95e-1054
T cell4.79e-1011
pro-T cell4.79e-1011
somatic stem cell9.02e-1091
multi fate stem cell9.02e-1091
somatic cell1.31e-09118
intestinal epithelial cell5.57e-099
epithelial cell of alimentary canal5.57e-099
nucleate cell3.15e-0816
hematopoietic lineage restricted progenitor cell3.17e-0825
leukocyte1.23e-0717
nongranular leukocyte1.23e-0717
animal cell2.44e-07115
eukaryotic cell2.44e-07115
mature alpha-beta T cell2.64e-079
alpha-beta T cell2.64e-079
immature T cell2.64e-079
mature T cell2.64e-079
immature alpha-beta T cell2.64e-079

Uber Anatomy
Ontology termp-valuen
connective tissue6.30e-1246
simple columnar epithelium2.91e-0911
epithelium of mucosa5.57e-099
gastrointestinal system epithelium5.57e-099
intestinal epithelium5.57e-099

Disease
Ontology termp-valuen
musculoskeletal system cancer2.34e-073
muscle cancer2.34e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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