NonredundantMotifs:13: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=PO;A;C;G;T!1;1045;1873;1726;1227!2;2413;957;1339;1162!3;904;1327;634;3006!4;6;6;6;5853!5;6;6;6;5853!6;816;4943;6;106!7;70;4192;6;1603!8;1820;1092;1115;1844!9;1568;6;4162;135!10;141;6;4926;798!11;5853;6;6;6!12;5853;6;6;6!13;2983;634;1362;892!14;1121;1303;1016;2431 | |PWM=PO;A;C;G;T!1;1045;1873;1726;1227!2;2413;957;1339;1162!3;904;1327;634;3006!4;6;6;6;5853!5;6;6;6;5853!6;816;4943;6;106!7;70;4192;6;1603!8;1820;1092;1115;1844!9;1568;6;4162;135!10;141;6;4926;798!11;5853;6;6;6!12;5853;6;6;6!13;2983;634;1362;892!14;1121;1303;1016;2431 | ||
|entrez_gene_id=6772 | |entrez_gene_id=6772 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:STAT1_f2~STAT6_do~STA5B_f1~STA5A_do~BCL6_f1~STAT3_si~STAT4_si /HOMER:STAT6_Macrophage-Stat6-ChIP-Seq~STAT6_CD4-Stat6-ChIP-Seq~STAT3_mES-Stat3-ChIP-Seq~STAT1_HelaS3-STAT1-ChIP-Seq~STAT3_CD4-Stat3-ChIP-Seq~STAT4_CD4-Stat4-ChIP-Seq~BCL6_Liver-Bcl6-ChIP-Seq(GSE31578)~STAT5_mCD4+-Stat5a|b-ChIP-Seq /JASPAR:MA0144.1;Stat3~MA0137.2;STAT1 /SWISSREGULON:STAT2,4,6.p2~STAT1,3.p3~STAT5(A,B).p2 /UNIPROBE:Bcl6b_primary;SCI09 | ||
|name= | |name=non-redundant13 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=STAT1_HelaS3-STAT1-ChIP-Seq | |representative_motif_id=STAT1_HelaS3-STAT1-ChIP-Seq | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:46, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant13
- db :HOMER
- Id :STAT1_HelaS3-STAT1-ChIP-Seq
- name :
- score :0.14724825034947067
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
