FFCP PHASE1:Hg19::chr10:17270313..17270321,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7431|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12692|TSSclassifier=S|UniProt=P08670|association_with_transcript=55bp_to_ENST00000478317,ENST00000544301,NM_003380,uc001iou.2_5end|coexpression_cluster_id=C168|description=CAGE_peak_17_at_VIM_5end|id=chr10:17270313..17270321,+|ontology_enrichment_celltype=CL:0002057!1.42e-57!42;CL:0000860!5.42e-53!45;CL:0000557!3.29e-50!71;CL:0000766!5.66e-46!76;CL:0000839!4.20e-43!70;CL:0002009!1.10e-39!65;CL:0000738!1.83e-39!140;CL:0002031!2.92e-37!124;CL:0002194!3.23e-36!63;CL:0000576!3.23e-36!63;CL:0000040!3.23e-36!63;CL:0000559!3.23e-36!63;CL:0000763!8.11e-34!112;CL:0000049!8.11e-34!112;CL:0000037!3.21e-33!172;CL:0000566!3.21e-33!172;CL:0002032!4.27e-31!165;CL:0000837!4.27e-31!165;CL:0000988!1.78e-30!182;CL:0002087!9.92e-29!119;CL:0002320!1.58e-17!365;CL:0000134!1.70e-17!358;CL:0000219!5.41e-15!390;CL:0002274!6.12e-12!5;CL:0000457!6.12e-12!5;CL:0002191!6.12e-12!5;CL:0000097!6.12e-12!5;CL:0000831!6.12e-12!5;CL:0002028!6.12e-12!5;CL:0000048!2.03e-11!430;CL:0002393!4.17e-11!9;CL:0002397!4.17e-11!9;CL:0000723!5.24e-11!436;CL:0000034!1.77e-10!444;CL:0000767!5.96e-08!3;CL:0000623!3.16e-07!3;CL:0000825!3.16e-07!3;CL:0000875!3.37e-07!3;CL:0002396!3.37e-07!3;CL:0000063!7.42e-07!578|ontology_enrichment_celltype_v019=CL:0000860;4.31e-29;33!CL:0002057;4.31e-29;33!CL:0000473;5.87e-20;39!CL:0000234;5.87e-20;39!CL:0000766;2.55e-18;69!CL:0001014;2.03e-16;2!CL:0001016;2.03e-16;2!CL:0000097;3.41e-15;5!CL:0000576;4.26e-15;48!CL:0000767;3.69e-11;3!CL:0000763;8.38e-10;100!CL:0002087;4.02e-09;104!CL:0002032;7.55e-09;1!CL:0000557;7.55e-09;1!CL:0000163;1.17e-08;9!CL:0000453;4.29e-07;5|ontology_enrichment_celltype_v019_2=CL:0000557,9.13e-38,67;CL:0000766,3.33e-31,72;CL:0000860,9.63e-29,42;CL:0002057,9.63e-29,42;CL:0000763,1.08e-27,108;CL:0000049,1.08e-27,108;CL:0000839,8.13e-27,66;CL:0000738,5.15e-26,136;CL:0002009,3.06e-25,61;CL:0000473,7.31e-25,48;CL:0000234,7.31e-25,48;CL:0002031,1.54e-24,120;CL:0002032,1.45e-23,161;CL:0000837,1.45e-23,161;CL:0000037,1.99e-22,168;CL:0000988,4.28e-21,177;CL:0002194,1.99e-19,59;CL:0000576,1.99e-19,59;CL:0000040,1.99e-19,59;CL:0000559,1.99e-19,59;CL:0001014,2.37e-16,2;CL:0001016,2.37e-16,2;CL:0000097,3.41e-15,5;CL:0002028,3.41e-15,5;CL:0002087,5.28e-14,115;CL:0000767,3.79e-11,3;CL:0000134,1.13e-10,354;CL:0002320,2.20e-10,361;CL:0000219,2.28e-09,386;CL:0000163,1.17e-08,9;CL:0000048,4.01e-08,427;CL:0000723,5.96e-08,433;CL:0000034,9.95e-08,441;CL:0000453,4.56e-07,5|ontology_enrichment_development_v019=CL:0002057;2.93e-20;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.00e-49!80;UBERON:0001474!2.58e-45!86;UBERON:0002390!7.36e-38!102;UBERON:0003061!7.36e-38!102;UBERON:0004765!1.40e-36!101;UBERON:0001434!1.40e-36!101;UBERON:0002193!2.96e-33!112;UBERON:0002405!1.72e-30!115;UBERON:0002204!6.51e-18!167;UBERON:0002384!2.69e-17!375;UBERON:0003081!8.89e-15!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.84e-33,76;UBERON:0001474,2.47e-30,82;UBERON:0004765,2.27e-27,90;UBERON:0002405,2.18e-26,93;UBERON:0002390,6.97e-25,98;UBERON:0003061,6.97e-25,98;UBERON:0001434,2.53e-24,100;UBERON:0002193,2.75e-22,108;UBERON:0002204,3.05e-13,167;UBERON:0003081,2.76e-10,203;UBERON:0002384,5.43e-10,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,2.63187409637329,0,0,0,0,0,0.293600439334847,0,0.401088894940283,1.51907609501096,0,0,0,0.145398238779565,0,0.242584061187816,0.464858073811369,1.23350366406548,0.929119112685311,0.863077176966451,0.768482119587302,0.236482229888585,1.03423704220986,4.51839278508678,0,0.188242339542605,0.818718450173537,0.674170453335254,2.14258724659632,2.24650318953266,1.27867425159808,0,0.398927315243264,0,2.03146467040009,3.40431134814684,3.73693349397345,0.75374599577023,0.521482918420201,0.434377689410233,2.42159801053347,4.05105399586321,3.48108626184973,0,0.212604299965044,0.419317291016752,0,0.300353785683013,0.48217676009124,0.855038231223746,0.19891667719909,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983548850569165,0.786021525498329,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,1.00803371612366,0.802320587350522,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0,0,0.571994910780128,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0.675105328965065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.176096868026452,9.53709331487551,4.17947864909188,7.82703087243556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0.394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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |||
|TSSclassifier=S | |||
|UniProt=P08670 | |||
|association_with_transcript=55bp_to_ENST00000478317,ENST00000544301,NM_003380,uc001iou.2_5end | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_17_at_VIM_5end | |||
|id=chr10:17270313..17270321,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.42e-57!42;CL:0000860!5.42e-53!45;CL:0000557!3.29e-50!71;CL:0000766!5.66e-46!76;CL:0000839!4.20e-43!70;CL:0002009!1.10e-39!65;CL:0000738!1.83e-39!140;CL:0002031!2.92e-37!124;CL:0002194!3.23e-36!63;CL:0000576!3.23e-36!63;CL:0000040!3.23e-36!63;CL:0000559!3.23e-36!63;CL:0000763!8.11e-34!112;CL:0000049!8.11e-34!112;CL:0000037!3.21e-33!172;CL:0000566!3.21e-33!172;CL:0002032!4.27e-31!165;CL:0000837!4.27e-31!165;CL:0000988!1.78e-30!182;CL:0002087!9.92e-29!119;CL:0002320!1.58e-17!365;CL:0000134!1.70e-17!358;CL:0000219!5.41e-15!390;CL:0002274!6.12e-12!5;CL:0000457!6.12e-12!5;CL:0002191!6.12e-12!5;CL:0000097!6.12e-12!5;CL:0000831!6.12e-12!5;CL:0002028!6.12e-12!5;CL:0000048!2.03e-11!430;CL:0002393!4.17e-11!9;CL:0002397!4.17e-11!9;CL:0000723!5.24e-11!436;CL:0000034!1.77e-10!444;CL:0000767!5.96e-08!3;CL:0000623!3.16e-07!3;CL:0000825!3.16e-07!3;CL:0000875!3.37e-07!3;CL:0002396!3.37e-07!3;CL:0000063!7.42e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.31e-29;33!CL:0002057;4.31e-29;33!CL:0000473;5.87e-20;39!CL:0000234;5.87e-20;39!CL:0000766;2.55e-18;69!CL:0001014;2.03e-16;2!CL:0001016;2.03e-16;2!CL:0000097;3.41e-15;5!CL:0000576;4.26e-15;48!CL:0000767;3.69e-11;3!CL:0000763;8.38e-10;100!CL:0002087;4.02e-09;104!CL:0002032;7.55e-09;1!CL:0000557;7.55e-09;1!CL:0000163;1.17e-08;9!CL:0000453;4.29e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,9.13e-38,67;CL:0000766,3.33e-31,72;CL:0000860,9.63e-29,42;CL:0002057,9.63e-29,42;CL:0000763,1.08e-27,108;CL:0000049,1.08e-27,108;CL:0000839,8.13e-27,66;CL:0000738,5.15e-26,136;CL:0002009,3.06e-25,61;CL:0000473,7.31e-25,48;CL:0000234,7.31e-25,48;CL:0002031,1.54e-24,120;CL:0002032,1.45e-23,161;CL:0000837,1.45e-23,161;CL:0000037,1.99e-22,168;CL:0000988,4.28e-21,177;CL:0002194,1.99e-19,59;CL:0000576,1.99e-19,59;CL:0000040,1.99e-19,59;CL:0000559,1.99e-19,59;CL:0001014,2.37e-16,2;CL:0001016,2.37e-16,2;CL:0000097,3.41e-15,5;CL:0002028,3.41e-15,5;CL:0002087,5.28e-14,115;CL:0000767,3.79e-11,3;CL:0000134,1.13e-10,354;CL:0002320,2.20e-10,361;CL:0000219,2.28e-09,386;CL:0000163,1.17e-08,9;CL:0000048,4.01e-08,427;CL:0000723,5.96e-08,433;CL:0000034,9.95e-08,441;CL:0000453,4.56e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;2.93e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.00e-49!80;UBERON:0001474!2.58e-45!86;UBERON:0002390!7.36e-38!102;UBERON:0003061!7.36e-38!102;UBERON:0004765!1.40e-36!101;UBERON:0001434!1.40e-36!101;UBERON:0002193!2.96e-33!112;UBERON:0002405!1.72e-30!115;UBERON:0002204!6.51e-18!167;UBERON:0002384!2.69e-17!375;UBERON:0003081!8.89e-15!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.84e-33,76;UBERON:0001474,2.47e-30,82;UBERON:0004765,2.27e-27,90;UBERON:0002405,2.18e-26,93;UBERON:0002390,6.97e-25,98;UBERON:0003061,6.97e-25,98;UBERON:0001434,2.53e-24,100;UBERON:0002193,2.75e-22,108;UBERON:0002204,3.05e-13,167;UBERON:0003081,2.76e-10,203;UBERON:0002384,5.43e-10,371 | |||
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|short_description=p17@VIM | |||
}} |
Revision as of 12:40, 10 September 2013
Short description: | p17@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_VIM_5end |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | 55bp_to_ENST00000478317, ENST00000544301, NM_003380, uc001iou.2_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | P08670 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.84e-33 | 76 |
bone element | 2.47e-30 | 82 |
skeletal element | 2.27e-27 | 90 |
immune system | 2.18e-26 | 93 |
hematopoietic system | 6.97e-25 | 98 |
blood island | 6.97e-25 | 98 |
skeletal system | 2.53e-24 | 100 |
hemolymphoid system | 2.75e-22 | 108 |
musculoskeletal system | 3.05e-13 | 167 |
lateral plate mesoderm | 2.76e-10 | 203 |
connective tissue | 5.43e-10 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.