FFCP PHASE1:Hg19::chr12:20522891..20522907,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5139|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8778|TSSclassifier=S|UniProt=|association_with_transcript=-151bp_to_ENST00000542675_5end|coexpression_cluster_id=C1012|description=CAGE_peak_8_at_PDE3A_5end|id=chr12:20522891..20522907,+|ontology_enrichment_celltype=CL:0002274!1.30e-08!5;CL:0000457!1.30e-08!5;CL:0002191!1.30e-08!5;CL:0000097!1.30e-08!5;CL:0000831!1.30e-08!5;CL:0002028!1.30e-08!5;CL:0002150!8.11e-07!3;CL:0000861!8.11e-07!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0008947;1.88e-20;29!UBERON:0010227;3.13e-07;1!UBERON:0010226;3.72e-07;1!UBERON:0004874;8.51e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;9.67e-13;2!DOID:178;3.72e-07;1!DOID:326;3.72e-07;1!DOID:3978;3.72e-07;1!DOID:3394;3.72e-07;1!DOID:5844;3.72e-07;1!DOID:1287;9.01e-07;4|ontology_enrichment_disease_v019_2=DOID:114,9.68e-13,2;DOID:305,1.80e-08,106;DOID:178,3.73e-07,1;DOID:326,3.73e-07,1;DOID:3978,3.73e-07,1;DOID:3394,3.73e-07,1;DOID:5844,3.73e-07,1;DOID:1287,9.02e-07,4|ontology_enrichment_uberon=UBERON:0001737!1.96e-16!9;UBERON:0007023!3.55e-14!115;UBERON:0008947!3.05e-08!38;UBERON:0003258!3.05e-08!38;UBERON:0001557!5.74e-08!19;UBERON:0000468!1.76e-07!659|ontology_enrichment_uberon_v019=UBERON:0001737;1.33e-47;9!UBERON:0001557;1.33e-47;9!UBERON:0000072;1.80e-14;37!UBERON:0007100;2.02e-13;25!UBERON:0000065;2.06e-11;44!UBERON:0002108;3.29e-10;4!UBERON:0000160;3.57e-10;17!UBERON:0004151;9.34e-09;3!UBERON:0003978;1.38e-08;3!UBERON:0000946;1.38e-08;3!UBERON:0005409;7.70e-08;22!UBERON:0002079;3.13e-07;1!UBERON:0002084;3.72e-07;1!UBERON:0002082;3.72e-07;1!UBERON:0002146;4.43e-07;1!UBERON:0005623;4.43e-07;1!UBERON:0002135;4.82e-07;1!UBERON:0000989;8.51e-07;1!UBERON:0008811;8.51e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.10e-47,9;UBERON:0001557,8.22e-22,19;UBERON:0008947,3.97e-15,38;UBERON:0003258,3.97e-15,38;UBERON:0004921,1.03e-13,118;UBERON:0007100,2.56e-12,27;UBERON:0000072,7.84e-12,47;UBERON:0001007,2.17e-10,145;UBERON:0001555,2.17e-10,145;UBERON:0007026,2.17e-10,145;UBERON:0000160,3.52e-10,17;UBERON:0002108,3.99e-10,4;UBERON:0000065,4.95e-10,54;UBERON:0001041,2.90e-09,87;UBERON:0004119,4.96e-09,160;UBERON:0000925,4.96e-09,160;UBERON:0006595,4.96e-09,160;UBERON:0004151,9.00e-09,3;UBERON:0003978,1.41e-08,3;UBERON:0009751,1.41e-08,3;UBERON:0000946,1.41e-08,3;UBERON:0002523,1.41e-08,3;UBERON:0005983,1.41e-08,3;UBERON:0002165,1.41e-08,3;UBERON:0002062,1.41e-08,3;UBERON:0007280,1.41e-08,3;UBERON:0001048,3.38e-08,160;UBERON:0001004,3.77e-08,74;UBERON:0002079,3.13e-07,1;UBERON:0002084,3.52e-07,1;UBERON:0002082,3.52e-07,1;UBERON:0010226,3.52e-07,1;UBERON:0002146,4.43e-07,1;UBERON:0005623,4.43e-07,1;UBERON:0002135,4.97e-07,1;UBERON:0005409,7.10e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.189069634328136,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,2.60274960087657,3.03452442140583,2.6511213287183,2.75734931830985,2.61455332910887,2.60997681022206,2.96628877952362,3.33576490713088,1.53898862778556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47798971368783,0.880484340132261,0.621984346622316,0.144119953416961,0.75745460055828,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37064843820784,0.858749320451947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31535265576129,0,0,0.202910376962704,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,2.78947183551498,0,0,0,0,0,0,10.0251857818341,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.438770794307945,1.0893846351899,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,1.415321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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5139 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-151bp_to_ENST00000542675_5end | |||
|coexpression_cluster_id=C1012 | |||
|description=CAGE_peak_8_at_PDE3A_5end | |||
|id=chr12:20522891..20522907,+ | |||
|ontology_enrichment_celltype=CL:0002274!1.30e-08!5;CL:0000457!1.30e-08!5;CL:0002191!1.30e-08!5;CL:0000097!1.30e-08!5;CL:0000831!1.30e-08!5;CL:0002028!1.30e-08!5;CL:0002150!8.11e-07!3;CL:0000861!8.11e-07!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.88e-20;29!UBERON:0010227;3.13e-07;1!UBERON:0010226;3.72e-07;1!UBERON:0004874;8.51e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;9.67e-13;2!DOID:178;3.72e-07;1!DOID:326;3.72e-07;1!DOID:3978;3.72e-07;1!DOID:3394;3.72e-07;1!DOID:5844;3.72e-07;1!DOID:1287;9.01e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,9.68e-13,2;DOID:305,1.80e-08,106;DOID:178,3.73e-07,1;DOID:326,3.73e-07,1;DOID:3978,3.73e-07,1;DOID:3394,3.73e-07,1;DOID:5844,3.73e-07,1;DOID:1287,9.02e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.96e-16!9;UBERON:0007023!3.55e-14!115;UBERON:0008947!3.05e-08!38;UBERON:0003258!3.05e-08!38;UBERON:0001557!5.74e-08!19;UBERON:0000468!1.76e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.33e-47;9!UBERON:0001557;1.33e-47;9!UBERON:0000072;1.80e-14;37!UBERON:0007100;2.02e-13;25!UBERON:0000065;2.06e-11;44!UBERON:0002108;3.29e-10;4!UBERON:0000160;3.57e-10;17!UBERON:0004151;9.34e-09;3!UBERON:0003978;1.38e-08;3!UBERON:0000946;1.38e-08;3!UBERON:0005409;7.70e-08;22!UBERON:0002079;3.13e-07;1!UBERON:0002084;3.72e-07;1!UBERON:0002082;3.72e-07;1!UBERON:0002146;4.43e-07;1!UBERON:0005623;4.43e-07;1!UBERON:0002135;4.82e-07;1!UBERON:0000989;8.51e-07;1!UBERON:0008811;8.51e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.10e-47,9;UBERON:0001557,8.22e-22,19;UBERON:0008947,3.97e-15,38;UBERON:0003258,3.97e-15,38;UBERON:0004921,1.03e-13,118;UBERON:0007100,2.56e-12,27;UBERON:0000072,7.84e-12,47;UBERON:0001007,2.17e-10,145;UBERON:0001555,2.17e-10,145;UBERON:0007026,2.17e-10,145;UBERON:0000160,3.52e-10,17;UBERON:0002108,3.99e-10,4;UBERON:0000065,4.95e-10,54;UBERON:0001041,2.90e-09,87;UBERON:0004119,4.96e-09,160;UBERON:0000925,4.96e-09,160;UBERON:0006595,4.96e-09,160;UBERON:0004151,9.00e-09,3;UBERON:0003978,1.41e-08,3;UBERON:0009751,1.41e-08,3;UBERON:0000946,1.41e-08,3;UBERON:0002523,1.41e-08,3;UBERON:0005983,1.41e-08,3;UBERON:0002165,1.41e-08,3;UBERON:0002062,1.41e-08,3;UBERON:0007280,1.41e-08,3;UBERON:0001048,3.38e-08,160;UBERON:0001004,3.77e-08,74;UBERON:0002079,3.13e-07,1;UBERON:0002084,3.52e-07,1;UBERON:0002082,3.52e-07,1;UBERON:0010226,3.52e-07,1;UBERON:0002146,4.43e-07,1;UBERON:0005623,4.43e-07,1;UBERON:0002135,4.97e-07,1;UBERON:0005409,7.10e-07,25 | |||
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|short_description=p8@PDE3A | |||
}} |
Revision as of 22:05, 10 September 2013
Short description: | p8@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | -151bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 1.10e-47 | 9 |
upper respiratory tract | 8.22e-22 | 19 |
respiratory primordium | 3.97e-15 | 38 |
endoderm of foregut | 3.97e-15 | 38 |
subdivision of digestive tract | 1.03e-13 | 118 |
primary circulatory organ | 2.56e-12 | 27 |
segment of respiratory tract | 7.84e-12 | 47 |
digestive system | 2.17e-10 | 145 |
digestive tract | 2.17e-10 | 145 |
primitive gut | 2.17e-10 | 145 |
intestine | 3.52e-10 | 17 |
small intestine | 3.99e-10 | 4 |
respiratory tract | 4.95e-10 | 54 |
foregut | 2.90e-09 | 87 |
endoderm-derived structure | 4.96e-09 | 160 |
endoderm | 4.96e-09 | 160 |
presumptive endoderm | 4.96e-09 | 160 |
cardiac chamber | 9.00e-09 | 3 |
valve | 1.41e-08 | 3 |
cardiac mesenchyme | 1.41e-08 | 3 |
cardial valve | 1.41e-08 | 3 |
tunica intima | 1.41e-08 | 3 |
heart layer | 1.41e-08 | 3 |
endocardium | 1.41e-08 | 3 |
endocardial cushion | 1.41e-08 | 3 |
presumptive endocardium | 1.41e-08 | 3 |
primordium | 3.38e-08 | 160 |
respiratory system | 3.77e-08 | 74 |
left cardiac atrium | 3.13e-07 | 1 |
heart left ventricle | 3.52e-07 | 1 |
cardiac ventricle | 3.52e-07 | 1 |
future cardiac ventricle | 3.52e-07 | 1 |
pulmonary valve | 4.43e-07 | 1 |
semi-lunar valve | 4.43e-07 | 1 |
mitral valve | 4.97e-07 | 1 |
gastrointestinal system | 7.10e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
heart disease | 9.68e-13 | 2 |
carcinoma | 1.80e-08 | 106 |
vascular disease | 3.73e-07 | 1 |
ischemia | 3.73e-07 | 1 |
extrinsic cardiomyopathy | 3.73e-07 | 1 |
myocardial ischemia | 3.73e-07 | 1 |
myocardial infarction | 3.73e-07 | 1 |
cardiovascular system disease | 9.02e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.