FFCP PHASE1:Hg19::chr12:68383219..68383284,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000538665,ENST00000541715,uc001stv.1_5end|coexpression_cluster_id=C3320|description=CAGE_peak_1_at_ENST00000538665_5end,CAGE_peak_1_at_ENST00000541715_5end,CAGE_peak_1_at_uc001stv.1_5end|id=chr12:68383219..68383284,+|ontology_enrichment_celltype=CL:0000542!4.32e-41!53;CL:0000051!4.32e-41!53;CL:0000838!4.97e-40!52;CL:0000738!3.79e-25!140;CL:0000945!1.60e-23!24;CL:0000826!1.60e-23!24;CL:0002087!2.05e-23!119;CL:0000791!6.45e-21!18;CL:0000789!6.45e-21!18;CL:0002420!6.45e-21!18;CL:0002419!6.45e-21!18;CL:0000790!6.45e-21!18;CL:0002031!2.35e-18!124;CL:0000037!2.68e-17!172;CL:0000566!2.68e-17!172;CL:0000236!5.64e-17!14;CL:0000625!9.10e-16!11;CL:0002032!1.47e-15!165;CL:0000837!1.47e-15!165;CL:0000988!3.11e-15!182;CL:0000084!9.05e-15!25;CL:0000827!9.05e-15!25;CL:0000624!2.19e-08!6|ontology_enrichment_celltype_v019=CL:0000945;1.60e-35;24!CL:0000542;1.12e-34;53!CL:0000791;6.52e-31;18!CL:0000789;6.52e-31;18!CL:0002419;6.52e-31;18!CL:0000236;1.48e-23;13!CL:0000625;5.28e-23;11!CL:0000084;8.45e-21;25!CL:0002087;1.05e-11;104!CL:0000624;1.10e-11;6!CL:0000226;8.16e-07;3!CL:0000842;8.16e-07;3|ontology_enrichment_celltype_v019_2=CL:0000542,2.10e-61,53;CL:0000051,2.10e-61,53;CL:0000838,8.55e-60,52;CL:0000945,1.55e-35,24;CL:0000826,1.55e-35,24;CL:0002087,7.52e-32,115;CL:0000738,4.31e-31,136;CL:0000791,4.43e-31,18;CL:0000789,4.43e-31,18;CL:0002420,4.43e-31,18;CL:0002419,4.43e-31,18;CL:0000790,4.43e-31,18;CL:0000236,4.08e-25,14;CL:0002031,3.09e-24,120;CL:0000625,5.31e-23,11;CL:0000037,3.36e-22,168;CL:0000084,6.47e-21,25;CL:0000827,6.47e-21,25;CL:0002032,2.15e-20,161;CL:0000837,2.15e-20,161;CL:0000988,2.71e-20,177;CL:0000624,7.39e-12,6;CL:0000226,7.62e-07,3;CL:0000842,7.62e-07,3|ontology_enrichment_development_v019=CL:0000051;1.12e-34;53!CL:0000790;6.52e-31;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.93e-26!115;UBERON:0000178!9.01e-12!15;UBERON:0000179!9.01e-12!15;UBERON:0000463!9.01e-12!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.19e-17;15!UBERON:0000179;1.19e-17;15!UBERON:0000463;1.19e-17;15!UBERON:0002390;2.05e-11;32!UBERON:0002193;5.58e-08;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.21e-17,15;UBERON:0000179,1.21e-17,15;UBERON:0000463,1.21e-17,15;UBERON:0007023,5.41e-07,114;UBERON:0004177,5.85e-07,7;UBERON:0005057,5.85e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05653622991805,3.20192298854788,3.22714203386085,1.18009283054671,1.53531759238885,0.309632246632152,0,0,0,54.9242452114339,26.7278157076352,0.880801318004542,1.10799081706375,2.60707781711184,0.868043482863407,0.447830948479849,7.12566065241755,1.03030227053675,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,2.42159801053347,0.736555271975129,0,0,0,0,0,0,0,0,0,0,61.5986855614629,58.4368314050481,60.4866292627217,60.595691604444,39.2388067295292,49.4287098360856,45.6120962221555,55.3351177630511,41.5525467449897,41.6938404453367,35.9336834437715,2.64342657158052,1.68152568894461,0,8.85193965512249,8.25322601773246,6.99045096598331,0.334372990781356,1.95553359980154,1.89379122293893,1.94826728407911,2.33961959458865,2.94605907474837,1.32920336750173,8.39491977671548,1.66518715643378,1.95089021339817,0.164437904603676,0,0,2.96573126324121,5.35081656179426,3.1360657141493,1.47302145506836,24.526111590523,70.0999988784565,107.280349416269,35.0421955756506,47.5290921315186,29.4640133778996,17.918439170255,29.1809473432074,44.9750615588445,37.4108058229547,28.7394798922366,14.314078768956,18.1859333132785,9.99288386791313,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0.324547393654683,0.870648686496336,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.69904584686553,4.9594342217689,2.82354679815446,0,0,0,0,0,0.749007023947182,0,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5451693322673,3.23571301227925,7.79111171965144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,8.62660935694688,14.5281069357051,7.40541343326411,16.1997607311297,18.0999400157925,9.07862635669804,13.5007859309529,7.13812658664843,0,0,0,2.78704762688578,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.19924798825107,12.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000538665,ENST00000541715,uc001stv.1_5end | |||
|coexpression_cluster_id=C3320 | |||
|description=CAGE_peak_1_at_ENST00000538665_5end,CAGE_peak_1_at_ENST00000541715_5end,CAGE_peak_1_at_uc001stv.1_5end | |||
|id=chr12:68383219..68383284,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.32e-41!53;CL:0000051!4.32e-41!53;CL:0000838!4.97e-40!52;CL:0000738!3.79e-25!140;CL:0000945!1.60e-23!24;CL:0000826!1.60e-23!24;CL:0002087!2.05e-23!119;CL:0000791!6.45e-21!18;CL:0000789!6.45e-21!18;CL:0002420!6.45e-21!18;CL:0002419!6.45e-21!18;CL:0000790!6.45e-21!18;CL:0002031!2.35e-18!124;CL:0000037!2.68e-17!172;CL:0000566!2.68e-17!172;CL:0000236!5.64e-17!14;CL:0000625!9.10e-16!11;CL:0002032!1.47e-15!165;CL:0000837!1.47e-15!165;CL:0000988!3.11e-15!182;CL:0000084!9.05e-15!25;CL:0000827!9.05e-15!25;CL:0000624!2.19e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.60e-35;24!CL:0000542;1.12e-34;53!CL:0000791;6.52e-31;18!CL:0000789;6.52e-31;18!CL:0002419;6.52e-31;18!CL:0000236;1.48e-23;13!CL:0000625;5.28e-23;11!CL:0000084;8.45e-21;25!CL:0002087;1.05e-11;104!CL:0000624;1.10e-11;6!CL:0000226;8.16e-07;3!CL:0000842;8.16e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.10e-61,53;CL:0000051,2.10e-61,53;CL:0000838,8.55e-60,52;CL:0000945,1.55e-35,24;CL:0000826,1.55e-35,24;CL:0002087,7.52e-32,115;CL:0000738,4.31e-31,136;CL:0000791,4.43e-31,18;CL:0000789,4.43e-31,18;CL:0002420,4.43e-31,18;CL:0002419,4.43e-31,18;CL:0000790,4.43e-31,18;CL:0000236,4.08e-25,14;CL:0002031,3.09e-24,120;CL:0000625,5.31e-23,11;CL:0000037,3.36e-22,168;CL:0000084,6.47e-21,25;CL:0000827,6.47e-21,25;CL:0002032,2.15e-20,161;CL:0000837,2.15e-20,161;CL:0000988,2.71e-20,177;CL:0000624,7.39e-12,6;CL:0000226,7.62e-07,3;CL:0000842,7.62e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.12e-34;53!CL:0000790;6.52e-31;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.93e-26!115;UBERON:0000178!9.01e-12!15;UBERON:0000179!9.01e-12!15;UBERON:0000463!9.01e-12!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.19e-17;15!UBERON:0000179;1.19e-17;15!UBERON:0000463;1.19e-17;15!UBERON:0002390;2.05e-11;32!UBERON:0002193;5.58e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.21e-17,15;UBERON:0000179,1.21e-17,15;UBERON:0000463,1.21e-17,15;UBERON:0007023,5.41e-07,114;UBERON:0004177,5.85e-07,7;UBERON:0005057,5.85e-07,7 | |||
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|short_description=p1@ENST00000538665,p1@ENST00000541715,p1@uc001stv.1 | |||
}} |
Revision as of 00:04, 11 September 2013
Short description: | p1@ENST00000538665, p1@ENST00000541715, p1@uc001stv.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000538665_5end, CAGE_peak_1_at_ENST00000541715_5end, CAGE_peak_1_at_uc001stv.1_5end |
Coexpression cluster: | C3320_lymphoma_CD19_CD4_myeloma_Burkitt_CD8_hereditary |
Association with transcript: | 0bp_to_ENST00000538665, ENST00000541715, uc001stv.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.10e-61 | 53 |
common lymphoid progenitor | 2.10e-61 | 53 |
lymphoid lineage restricted progenitor cell | 8.55e-60 | 52 |
lymphocyte of B lineage | 1.55e-35 | 24 |
pro-B cell | 1.55e-35 | 24 |
nongranular leukocyte | 7.52e-32 | 115 |
leukocyte | 4.31e-31 | 136 |
mature alpha-beta T cell | 4.43e-31 | 18 |
alpha-beta T cell | 4.43e-31 | 18 |
immature T cell | 4.43e-31 | 18 |
mature T cell | 4.43e-31 | 18 |
immature alpha-beta T cell | 4.43e-31 | 18 |
B cell | 4.08e-25 | 14 |
hematopoietic lineage restricted progenitor cell | 3.09e-24 | 120 |
CD8-positive, alpha-beta T cell | 5.31e-23 | 11 |
hematopoietic stem cell | 3.36e-22 | 168 |
T cell | 6.47e-21 | 25 |
pro-T cell | 6.47e-21 | 25 |
hematopoietic oligopotent progenitor cell | 2.15e-20 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-20 | 161 |
hematopoietic cell | 2.71e-20 | 177 |
CD4-positive, alpha-beta T cell | 7.39e-12 | 6 |
single nucleate cell | 7.62e-07 | 3 |
mononuclear cell | 7.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.21e-17 | 15 |
haemolymphatic fluid | 1.21e-17 | 15 |
organism substance | 1.21e-17 | 15 |
adult organism | 5.41e-07 | 114 |
hemopoietic organ | 5.85e-07 | 7 |
immune organ | 5.85e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.