FFCP PHASE1:Hg19::chr13:111805980..111806050,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8874|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15607|TSSclassifier=S|UniProt=E7EUY6,E7EU80,C9JAD7,B7Z6D9,Q5W9H1|association_with_transcript=0bp_to_ENST00000466143,ENST00000469877,ENST00000491775,ENST00000544132,uc001vru.1,uc001vrv.3,uc010tjn.1_5end|description=CAGE_peak_1_at_ARHGEF7_5end|id=chr13:111805980..111806050,+|ontology_enrichment_celltype=CL:0000542!9.77e-14!53;CL:0000051!9.77e-14!53;CL:0000838!2.81e-13!52;CL:0000738!2.82e-10!140;CL:0000037!9.48e-10!172;CL:0000566!9.48e-10!172;CL:0000988!1.50e-08!182;CL:0002032!2.58e-08!165;CL:0000837!2.58e-08!165;CL:0000945!1.99e-07!24;CL:0000826!1.99e-07!24|ontology_enrichment_celltype_v019=CL:0000542;1.37e-08;53!CL:0000945;2.10e-07;24|ontology_enrichment_celltype_v019_2=CL:0000542,9.77e-14,53;CL:0000051,9.77e-14,53;CL:0000838,2.81e-13,52;CL:0000738,5.58e-11,136;CL:0000037,2.43e-10,168;CL:0000988,2.54e-09,177;CL:0002032,7.43e-09,161;CL:0000837,7.43e-09,161;CL:0000945,1.99e-07,24;CL:0000826,1.99e-07,24;CL:0002031,4.54e-07,120;CL:0002087,5.28e-07,115|ontology_enrichment_development_v019=CL:0000051;1.37e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.01e-15!57;UBERON:0005068!4.01e-15!57;UBERON:0006241!4.01e-15!57;UBERON:0007135!4.01e-15!57;UBERON:0001893!2.47e-12!34;UBERON:0002619!3.63e-12!22;UBERON:0001869!3.77e-12!32;UBERON:0007023!3.80e-12!115;UBERON:0003080!4.27e-12!42;UBERON:0002780!4.80e-12!41;UBERON:0001890!4.80e-12!41;UBERON:0006240!4.80e-12!41;UBERON:0002020!5.26e-12!34;UBERON:0003528!5.26e-12!34;UBERON:0002616!6.52e-12!59;UBERON:0002791!6.75e-12!33;UBERON:0000955!2.27e-11!69;UBERON:0006238!2.27e-11!69;UBERON:0001950!2.85e-11!20;UBERON:0000956!2.41e-10!25;UBERON:0000203!2.41e-10!25;UBERON:0001017!3.78e-10!82;UBERON:0000073!2.05e-09!94;UBERON:0001016!2.05e-09!94;UBERON:0005743!7.32e-09!86;UBERON:0002346!7.49e-08!90;UBERON:0003075!9.04e-08!86;UBERON:0007284!9.04e-08!86|ontology_enrichment_uberon_v019=UBERON:0002619;4.10e-12;22!UBERON:0001950;3.07e-11;20!UBERON:0001869;5.26e-11;32!UBERON:0002791;1.15e-10;32!UBERON:0001893;1.40e-10;34!UBERON:0003528;2.18e-10;34!UBERON:0002020;2.18e-10;34!UBERON:0000956;2.74e-10;25!UBERON:0000203;2.74e-10;25!UBERON:0002780;3.93e-09;41!UBERON:0001890;3.93e-09;41!UBERON:0000073;3.69e-08;53!UBERON:0002616;3.69e-08;53|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.62e-15,56;UBERON:0005068,4.62e-15,56;UBERON:0006241,4.62e-15,56;UBERON:0007135,4.62e-15,56;UBERON:0000073,2.23e-14,53;UBERON:0002616,2.23e-14,53;UBERON:0001893,2.47e-12,34;UBERON:0002619,3.63e-12,22;UBERON:0001869,3.77e-12,32;UBERON:0002780,4.80e-12,41;UBERON:0001890,4.80e-12,41;UBERON:0003080,4.80e-12,41;UBERON:0006240,4.80e-12,41;UBERON:0003528,5.26e-12,34;UBERON:0002020,5.26e-12,34;UBERON:0002791,8.35e-12,32;UBERON:0007023,8.95e-12,114;UBERON:0000955,2.79e-11,68;UBERON:0006238,2.79e-11,68;UBERON:0001950,2.85e-11,20;UBERON:0001016,1.41e-10,89;UBERON:0000956,2.41e-10,25;UBERON:0000203,2.41e-10,25;UBERON:0001017,4.71e-10,81;UBERON:0002346,1.35e-07,86;UBERON:0003075,1.61e-07,82;UBERON:0007284,1.61e-07,82|phase1_expression=6.54042165374004,7.92171938396638,7.75249222527841,5.00366491765652,7.59833860526389,13.0850778615055,7.59899634504932,6.31719873426831,7.57438321779532,9.09215565055583,9.76921635161399,10.9220686065086,9.75937819445278,7.1784484716827,11.930305526205,6.05092631806598,7.23233433628772,6.57279081348636,5.85519358548608,13.5433163884467,15.5040525345632,12.5381888591235,10.5907315238491,12.0449494064138,13.9352329950231,23.0768485358813,18.3084314473379,18.654455171342,19.2748495655963,25.332740274416,26.1639248404168,12.871897142705,13.8554722637995,13.3111443660044,14.5638337090967,23.4579233604246,13.2120197700681,34.9017107375083,20.8566225368947,20.6160327180059,15.4501677225548,11.9840656427022,18.5454408696614,14.2490274003973,15.87078963493,18.436388650274,9.29716147622739,12.3350366406548,12.6979612066992,8.91846416198666,13.0641960329841,11.5876292645407,12.7555901872549,14.2006630388442,9.47985406160392,12.9887214284397,12.5536829026609,14.1575795200403,11.0190201253525,6.73950956859797,17.2621023965741,11.5447955065351,11.369428484433,14.0654167675789,7.83564944297177,9.07816359505824,10.5879782329248,14.5724225848911,8.86520961314342,14.5516525952428,15.7403870684676,12.1531619875896,13.2914202725171,13.9428488965882,11.6932364980774,9.64429769338529,14.1534075244584,11.263266963113,15.2689307362226,15.6757009057687,10.5425838915518,12.0558341484658,26.3994366691984,28.945346396893,22.2377313465889,22.1899715734584,28.0277190925209,22.9900975981793,23.1365705474702,25.7594513724548,38.137268930333,29.3618594685469,37.4627763562724,25.1125524300149,39.7961079716891,11.8522838148785,22.6216235630908,16.5064520354649,23.027367887945,20.3967524376627,33.8959157298934,22.2520468695325,21.4309401248702,19.274009041135,20.3278076157638,14.621237042519,17.331447280961,17.54851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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8874 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15607 | |||
|TSSclassifier=S | |||
|UniProt=E7EUY6,E7EU80,C9JAD7,B7Z6D9,Q5W9H1 | |||
|association_with_transcript=0bp_to_ENST00000466143,ENST00000469877,ENST00000491775,ENST00000544132,uc001vru.1,uc001vrv.3,uc010tjn.1_5end | |||
|description=CAGE_peak_1_at_ARHGEF7_5end | |||
|id=chr13:111805980..111806050,+ | |||
|ontology_enrichment_celltype=CL:0000542!9.77e-14!53;CL:0000051!9.77e-14!53;CL:0000838!2.81e-13!52;CL:0000738!2.82e-10!140;CL:0000037!9.48e-10!172;CL:0000566!9.48e-10!172;CL:0000988!1.50e-08!182;CL:0002032!2.58e-08!165;CL:0000837!2.58e-08!165;CL:0000945!1.99e-07!24;CL:0000826!1.99e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.37e-08;53!CL:0000945;2.10e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.77e-14,53;CL:0000051,9.77e-14,53;CL:0000838,2.81e-13,52;CL:0000738,5.58e-11,136;CL:0000037,2.43e-10,168;CL:0000988,2.54e-09,177;CL:0002032,7.43e-09,161;CL:0000837,7.43e-09,161;CL:0000945,1.99e-07,24;CL:0000826,1.99e-07,24;CL:0002031,4.54e-07,120;CL:0002087,5.28e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000051;1.37e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.01e-15!57;UBERON:0005068!4.01e-15!57;UBERON:0006241!4.01e-15!57;UBERON:0007135!4.01e-15!57;UBERON:0001893!2.47e-12!34;UBERON:0002619!3.63e-12!22;UBERON:0001869!3.77e-12!32;UBERON:0007023!3.80e-12!115;UBERON:0003080!4.27e-12!42;UBERON:0002780!4.80e-12!41;UBERON:0001890!4.80e-12!41;UBERON:0006240!4.80e-12!41;UBERON:0002020!5.26e-12!34;UBERON:0003528!5.26e-12!34;UBERON:0002616!6.52e-12!59;UBERON:0002791!6.75e-12!33;UBERON:0000955!2.27e-11!69;UBERON:0006238!2.27e-11!69;UBERON:0001950!2.85e-11!20;UBERON:0000956!2.41e-10!25;UBERON:0000203!2.41e-10!25;UBERON:0001017!3.78e-10!82;UBERON:0000073!2.05e-09!94;UBERON:0001016!2.05e-09!94;UBERON:0005743!7.32e-09!86;UBERON:0002346!7.49e-08!90;UBERON:0003075!9.04e-08!86;UBERON:0007284!9.04e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.10e-12;22!UBERON:0001950;3.07e-11;20!UBERON:0001869;5.26e-11;32!UBERON:0002791;1.15e-10;32!UBERON:0001893;1.40e-10;34!UBERON:0003528;2.18e-10;34!UBERON:0002020;2.18e-10;34!UBERON:0000956;2.74e-10;25!UBERON:0000203;2.74e-10;25!UBERON:0002780;3.93e-09;41!UBERON:0001890;3.93e-09;41!UBERON:0000073;3.69e-08;53!UBERON:0002616;3.69e-08;53 | |||
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| |||
|short_description=p1@ARHGEF7 | |||
}} |
Revision as of 01:31, 11 September 2013
Short description: | p1@ARHGEF7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ARHGEF7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000466143, ENST00000469877, ENST00000491775, ENST00000544132, uc001vru.1, uc001vrv.3, uc010tjn.1_5end |
EntrezGene: | ARHGEF7 |
HGNC: | 15607 |
UniProt: | E7EUY6E7EU80C9JAD7B7Z6D9Q5W9H1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.77e-14 | 53 |
common lymphoid progenitor | 9.77e-14 | 53 |
lymphoid lineage restricted progenitor cell | 2.81e-13 | 52 |
leukocyte | 5.58e-11 | 136 |
hematopoietic stem cell | 2.43e-10 | 168 |
hematopoietic cell | 2.54e-09 | 177 |
hematopoietic oligopotent progenitor cell | 7.43e-09 | 161 |
hematopoietic multipotent progenitor cell | 7.43e-09 | 161 |
lymphocyte of B lineage | 1.99e-07 | 24 |
pro-B cell | 1.99e-07 | 24 |
hematopoietic lineage restricted progenitor cell | 4.54e-07 | 120 |
nongranular leukocyte | 5.28e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
neural tube | 4.62e-15 | 56 |
neural rod | 4.62e-15 | 56 |
future spinal cord | 4.62e-15 | 56 |
neural keel | 4.62e-15 | 56 |
regional part of nervous system | 2.23e-14 | 53 |
regional part of brain | 2.23e-14 | 53 |
telencephalon | 2.47e-12 | 34 |
regional part of cerebral cortex | 3.63e-12 | 22 |
cerebral hemisphere | 3.77e-12 | 32 |
regional part of forebrain | 4.80e-12 | 41 |
forebrain | 4.80e-12 | 41 |
anterior neural tube | 4.80e-12 | 41 |
future forebrain | 4.80e-12 | 41 |
brain grey matter | 5.26e-12 | 34 |
gray matter | 5.26e-12 | 34 |
regional part of telencephalon | 8.35e-12 | 32 |
adult organism | 8.95e-12 | 114 |
brain | 2.79e-11 | 68 |
future brain | 2.79e-11 | 68 |
neocortex | 2.85e-11 | 20 |
nervous system | 1.41e-10 | 89 |
cerebral cortex | 2.41e-10 | 25 |
pallium | 2.41e-10 | 25 |
central nervous system | 4.71e-10 | 81 |
neurectoderm | 1.35e-07 | 86 |
neural plate | 1.61e-07 | 82 |
presumptive neural plate | 1.61e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.