FFCP PHASE1:Hg19::chr13:52733546..52733564,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4752|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7746|TSSclassifier=S|UniProt=P51956|association_with_transcript=-36bp_to_ENST00000378101,uc001vgi.2_5end|description=CAGE_peak_3_at_NEK3_5end|id=chr13:52733546..52733564,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000511;2.98e-08;1!CL:0002625;2.98e-08;1!CL:0000222;2.98e-08;1!CL:0000216;2.98e-08;1!CL:0002591;2.98e-08;1|ontology_enrichment_celltype_v019_2=CL:0000511,1.52e-08,1;CL:0002625,1.52e-08,1;CL:0000216,1.52e-08,1;CL:0002591,4.11e-08,1|ontology_enrichment_development_v019=UBERON:0000358;1.09e-08;1!UBERON:0005425;2.98e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.06e-07!94;UBERON:0001016!2.06e-07!94|ontology_enrichment_uberon_v019=UBERON:0000473;1.18e-08;8!UBERON:0005795;2.98e-08;1!UBERON:0001136;2.98e-08;1!UBERON:0000941;2.98e-08;1!UBERON:0001343;2.98e-08;1!UBERON:0001785;2.98e-08;1!UBERON:0002464;2.98e-08;1!UBERON:0004904;2.98e-08;1!UBERON:0002426;2.98e-08;1!UBERON:0003831;2.98e-08;1!UBERON:0003898;2.98e-08;1!UBERON:0004830;2.98e-08;1!UBERON:0001021;2.98e-08;1!UBERON:0003830;2.98e-08;1!UBERON:0005175;2.98e-08;1!UBERON:0001774;2.98e-08;1!UBERON:0004910;2.98e-08;1!UBERON:0004813;2.98e-08;1!UBERON:0001103;2.98e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.17e-09,8;UBERON:0001136,1.52e-08,1;UBERON:0001343,1.52e-08,1;UBERON:0004910,1.52e-08,1;UBERON:0005154,1.52e-08,1;UBERON:0005295,1.52e-08,1;UBERON:0004813,1.52e-08,1;UBERON:0005297,1.52e-08,1;UBERON:0005294,1.52e-08,1;UBERON:0010141,1.52e-08,1;UBERON:0005891,1.52e-08,1;UBERON:0002426,1.63e-08,1;UBERON:0003831,1.63e-08,1;UBERON:0003898,1.63e-08,1;UBERON:0004830,1.63e-08,1;UBERON:0003830,1.63e-08,1;UBERON:0005175,1.63e-08,1;UBERON:0001774,1.63e-08,1;UBERON:0001103,1.63e-08,1;UBERON:0010084,1.63e-08,1;UBERON:0000941,2.17e-08,1;UBERON:0001785,2.17e-08,1;UBERON:0002464,2.17e-08,1;UBERON:0004904,2.17e-08,1;UBERON:0001021,2.17e-08,1;UBERON:0003902,2.17e-08,1;UBERON:0005425,2.17e-08,1|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434377689410233,0,0,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0.150176892841506,0.16072558669708,0.570025487482497,0.79566670879636,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0.473447805734733,0,0.111410456885174,0,0,0.270803863765016,0,0.260118695119756,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0.795285947051099,0,0,0.443458794925128,0.263504357079378,1.0478326039817,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0.56530794192401,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.529636723252875,0,0,0,0,0,0.311211035399766,0.269421344139376,0.326923806226917,0,0,0,0,0,0.448346041655403,0.117434498643765,0.485618833104395,0,0.204154171254893,0,0,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0.30648779579902,0,0,1.07633781413317,0.213557388818567,0.211931901159562,0.900273288253207,0,0,0,0.337552664482532,0.292311015483596,0.252433774244115,0.0920498986422993,0.646584227275248,0.710019185033229,0.302256294682921,0.169560592310488,0,0,0.286804595389004,0,0.265059536642971,0.464775771478074,0.518305275076852,0.252320850875628,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.245976877086227,0,0.329250856225877,0,0.201057944823262,0.185176890317059,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0.207328115540772,0,0.25248486685276,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0,0.112131084345361,0,0.1466765716419,0.258543431515556,0,0.845302752556,0.26593811658487,0,0,1.41849132023278,0,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0.199945982364114,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0.215627574859517,0,1.01637849688985,0,1.54657762555539,0.502548796003046,0,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0.664225598535437,0.184369168541703,0.347534457872331,0,0.686286847621712,0,0,0,0,1.66435439510497,0,0,0.306923946576125,0,0,0,0,0,0.462629081407967,0,0.164254312027618,0.519254429183621,0,0.725156697549733,0.200506470303285,0,0,0.182091168006717,0.131124414959424,0,0,0,1.46139224653261,0.527758144464379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0.574265537996172,0.650060246036521,1.6068392984416,0.290012154876366,0.154048617114644,0.3070073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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4752 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7746 | |||
|TSSclassifier=S | |||
|UniProt=P51956 | |||
|association_with_transcript=-36bp_to_ENST00000378101,uc001vgi.2_5end | |||
|description=CAGE_peak_3_at_NEK3_5end | |||
|id=chr13:52733546..52733564,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000511;2.98e-08;1!CL:0002625;2.98e-08;1!CL:0000222;2.98e-08;1!CL:0000216;2.98e-08;1!CL:0002591;2.98e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.52e-08,1;CL:0002625,1.52e-08,1;CL:0000216,1.52e-08,1;CL:0002591,4.11e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.09e-08;1!UBERON:0005425;2.98e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.06e-07!94;UBERON:0001016!2.06e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.18e-08;8!UBERON:0005795;2.98e-08;1!UBERON:0001136;2.98e-08;1!UBERON:0000941;2.98e-08;1!UBERON:0001343;2.98e-08;1!UBERON:0001785;2.98e-08;1!UBERON:0002464;2.98e-08;1!UBERON:0004904;2.98e-08;1!UBERON:0002426;2.98e-08;1!UBERON:0003831;2.98e-08;1!UBERON:0003898;2.98e-08;1!UBERON:0004830;2.98e-08;1!UBERON:0001021;2.98e-08;1!UBERON:0003830;2.98e-08;1!UBERON:0005175;2.98e-08;1!UBERON:0001774;2.98e-08;1!UBERON:0004910;2.98e-08;1!UBERON:0004813;2.98e-08;1!UBERON:0001103;2.98e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.17e-09,8;UBERON:0001136,1.52e-08,1;UBERON:0001343,1.52e-08,1;UBERON:0004910,1.52e-08,1;UBERON:0005154,1.52e-08,1;UBERON:0005295,1.52e-08,1;UBERON:0004813,1.52e-08,1;UBERON:0005297,1.52e-08,1;UBERON:0005294,1.52e-08,1;UBERON:0010141,1.52e-08,1;UBERON:0005891,1.52e-08,1;UBERON:0002426,1.63e-08,1;UBERON:0003831,1.63e-08,1;UBERON:0003898,1.63e-08,1;UBERON:0004830,1.63e-08,1;UBERON:0003830,1.63e-08,1;UBERON:0005175,1.63e-08,1;UBERON:0001774,1.63e-08,1;UBERON:0001103,1.63e-08,1;UBERON:0010084,1.63e-08,1;UBERON:0000941,2.17e-08,1;UBERON:0001785,2.17e-08,1;UBERON:0002464,2.17e-08,1;UBERON:0004904,2.17e-08,1;UBERON:0001021,2.17e-08,1;UBERON:0003902,2.17e-08,1;UBERON:0005425,2.17e-08,1 | |||
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| |||
|short_description=p3@NEK3 | |||
}} |
Revision as of 02:36, 11 September 2013
Short description: | p3@NEK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NEK3_5end |
Coexpression cluster: | NA |
Association with transcript: | -36bp_to_ENST00000378101, uc001vgi.2_5end |
EntrezGene: | NEK3 |
HGNC: | 7746 |
UniProt: | P51956 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.52e-08 | 1 |
seminiferous tubule epithelial cell | 1.52e-08 | 1 |
Sertoli cell | 1.52e-08 | 1 |
smooth muscle cell of the pulmonary artery | 4.11e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 9.17e-09 | 8 |
mesothelium | 1.52e-08 | 1 |
seminiferous tubule of testis | 1.52e-08 | 1 |
epithelium of male gonad | 1.52e-08 | 1 |
epithelial cord | 1.52e-08 | 1 |
sex cord | 1.52e-08 | 1 |
seminiferous tubule epithelium | 1.52e-08 | 1 |
testis sex cord | 1.52e-08 | 1 |
genital ridge | 1.52e-08 | 1 |
primitive sex cord of indifferent gonad | 1.52e-08 | 1 |
coelomic epithelium | 1.52e-08 | 1 |
chest muscle | 1.63e-08 | 1 |
respiratory system muscle | 1.63e-08 | 1 |
skeletal muscle of trunk | 1.63e-08 | 1 |
respiratory system skeletal muscle | 1.63e-08 | 1 |
thoracic segment muscle | 1.63e-08 | 1 |
chest organ | 1.63e-08 | 1 |
muscle of trunk | 1.63e-08 | 1 |
diaphragm | 1.63e-08 | 1 |
future diaphragm | 1.63e-08 | 1 |
cranial nerve II | 2.17e-08 | 1 |
cranial nerve | 2.17e-08 | 1 |
nerve trunk | 2.17e-08 | 1 |
nerve connecting eye with brain | 2.17e-08 | 1 |
nerve | 2.17e-08 | 1 |
retinal neural layer | 2.17e-08 | 1 |
presumptive neural retina | 2.17e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.