FFCP PHASE1:Hg19::chr17:41622731..41622764,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2118|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3493|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc002idy.1_5end|coexpression_cluster_id=C55|description=CAGE_peak_5_at_ETV4_5end|id=chr17:41622731..41622764,-|ontology_enrichment_celltype=CL:0000066!5.16e-26!254;CL:0002321!3.10e-24!248;CL:0000220!2.59e-23!246;CL:0000548!1.18e-15!679;CL:0000004!1.18e-15!679;CL:0000255!1.18e-15!679;CL:0000012!4.88e-15!682;CL:0000222!4.96e-10!119;CL:0000393!8.20e-10!60;CL:0000211!8.20e-10!60;CL:0000183!2.37e-09!59;CL:0000003!7.10e-09!722;CL:0000055!1.38e-08!180;CL:0000187!1.63e-08!54;CL:0000680!1.97e-08!57;CL:0000056!1.97e-08!57;CL:0000355!1.97e-08!57;CL:0000223!2.81e-08!59;CL:0000192!1.84e-07!42;CL:0000514!1.84e-07!42;CL:0000359!2.63e-07!32;CL:0000144!3.80e-07!625|ontology_enrichment_celltype_v019=CL:0000359;9.51e-09;32|ontology_enrichment_celltype_v019_2=CL:0000066,5.27e-16,253;CL:0002321,1.14e-14,250;CL:0000359,7.30e-09,32;CL:0000393,9.15e-09,61;CL:0000211,9.15e-09,61;CL:0000187,3.27e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.80e-11!106;DOID:0050687!6.16e-10!143;DOID:162!1.46e-08!235;DOID:14566!2.13e-08!239|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,2.19e-09,106;DOID:0050687,2.01e-08,143|ontology_enrichment_uberon=UBERON:0005256!1.50e-13!143;UBERON:0000119!4.85e-13!312;UBERON:0000486!5.07e-13!82;UBERON:0000490!5.59e-13!138;UBERON:0003104!8.44e-13!238;UBERON:0009142!8.44e-13!238;UBERON:0000483!1.49e-12!309;UBERON:0003914!2.03e-11!118;UBERON:0000481!2.45e-11!347;UBERON:0002100!4.34e-10!216;UBERON:0000914!6.37e-10!83;UBERON:0002329!6.37e-10!83;UBERON:0003077!6.37e-10!83;UBERON:0003059!6.37e-10!83;UBERON:0007282!6.37e-10!83;UBERON:0009618!6.37e-10!83;UBERON:0007285!6.37e-10!83;UBERON:0004290!9.25e-10!70;UBERON:0004119!2.13e-09!169;UBERON:0000925!2.13e-09!169;UBERON:0006595!2.13e-09!169;UBERON:0001637!3.15e-09!42;UBERON:0003509!3.15e-09!42;UBERON:0004572!3.15e-09!42;UBERON:0002049!4.30e-09!79;UBERON:0007798!4.30e-09!79;UBERON:0001981!1.20e-08!60;UBERON:0007500!1.20e-08!60;UBERON:0004537!1.20e-08!60;UBERON:0006965!1.20e-08!60;UBERON:0000055!2.25e-08!69;UBERON:0001048!3.67e-08!168;UBERON:0005911!1.26e-07!82;UBERON:0001007!1.93e-07!155;UBERON:0001555!1.93e-07!155;UBERON:0007026!1.93e-07!155;UBERON:0000922!3.04e-07!612;UBERON:0000466!4.15e-07!126;UBERON:0000475!4.47e-07!365;UBERON:0004573!5.77e-07!33;UBERON:0004571!5.77e-07!33;UBERON:0001134!6.60e-07!61;UBERON:0002036!6.60e-07!61;UBERON:0003082!6.60e-07!61|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000490,2.36e-12,148;UBERON:0000486,4.68e-11,83;UBERON:0005256,7.08e-11,122;UBERON:0003914,2.94e-10,117;UBERON:0007503,7.94e-09,78;UBERON:0000119,8.67e-09,309;UBERON:0002329,1.15e-08,71;UBERON:0003059,1.15e-08,71;UBERON:0007282,1.15e-08,71;UBERON:0004290,1.15e-08,71;UBERON:0009618,1.15e-08,71;UBERON:0001637,1.89e-08,42;UBERON:0003509,1.89e-08,42;UBERON:0004572,1.89e-08,42;UBERON:0003077,2.07e-08,72;UBERON:0007285,2.07e-08,72;UBERON:0003104,2.41e-08,160;UBERON:0009142,2.41e-08,160;UBERON:0000483,3.46e-08,306;UBERON:0002100,3.47e-08,199;UBERON:0007524,3.66e-08,73;UBERON:0007500,8.26e-08,59;UBERON:0001981,8.26e-08,59;UBERON:0004537,8.26e-08,59;UBERON:0006965,8.26e-08,59;UBERON:0002049,1.21e-07,78;UBERON:0007798,1.21e-07,78;UBERON:0000055,5.21e-07,68;UBERON:0004573,7.04e-07,33;UBERON:0004571,7.04e-07,33|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.982935746006035,0.697801167972428,1.52908960491121,1.31883489114227,0.123766352960047,0,3.36162573225888,3.61616716814386,2.92124036154949,1.46379839637152,0.738726348460727,0.816002764977012,0,0,0.821246550437305,0.251085279189606,0.534893840235659,0.328402357799783,0.236132343941038,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0.486634870302636,0.189069634328136,0.886917589850256,0.263504357079378,0.0654895377488563,3.64295288292542,1.48313777113772,0,0,0,0,0,0,2.38514888840046,1.72046919021225,1.38856200643038,0,0.419499436209906,1.6507082516404,1.8809546988313,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0.24406205754817,0.367663080345869,0.81014194788176,0.357198913136319,1.57170560838319,0.225222960966644,4.5994991239765,1.89853131913626,1.64881569537367,0,0,0.436094052142534,0,0.25326102332916,0.397227542439656,0,0.354668382198357,0,1.06748995729705,0.49333509683432,0,0.134710672069688,0.326923806226917,2.57307626996383,0,3.28050004567315,1.24864030732128,2.85235910772225,1.94283284717341,2.3486899728753,2.42809416552197,3.23036855415172,2.24569588380383,7.98423062526492,0.929932030581889,0,0.247266929278557,8.19145225744224,1.43723628363248,3.70339450698946,4.37914819551875,0.554128230968366,0,0,0.6009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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2118 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3493 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002idy.1_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_5_at_ETV4_5end | |||
|id=chr17:41622731..41622764,- | |||
|ontology_enrichment_celltype=CL:0000066!5.16e-26!254;CL:0002321!3.10e-24!248;CL:0000220!2.59e-23!246;CL:0000548!1.18e-15!679;CL:0000004!1.18e-15!679;CL:0000255!1.18e-15!679;CL:0000012!4.88e-15!682;CL:0000222!4.96e-10!119;CL:0000393!8.20e-10!60;CL:0000211!8.20e-10!60;CL:0000183!2.37e-09!59;CL:0000003!7.10e-09!722;CL:0000055!1.38e-08!180;CL:0000187!1.63e-08!54;CL:0000680!1.97e-08!57;CL:0000056!1.97e-08!57;CL:0000355!1.97e-08!57;CL:0000223!2.81e-08!59;CL:0000192!1.84e-07!42;CL:0000514!1.84e-07!42;CL:0000359!2.63e-07!32;CL:0000144!3.80e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.51e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.27e-16,253;CL:0002321,1.14e-14,250;CL:0000359,7.30e-09,32;CL:0000393,9.15e-09,61;CL:0000211,9.15e-09,61;CL:0000187,3.27e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.80e-11!106;DOID:0050687!6.16e-10!143;DOID:162!1.46e-08!235;DOID:14566!2.13e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.19e-09,106;DOID:0050687,2.01e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0005256!1.50e-13!143;UBERON:0000119!4.85e-13!312;UBERON:0000486!5.07e-13!82;UBERON:0000490!5.59e-13!138;UBERON:0003104!8.44e-13!238;UBERON:0009142!8.44e-13!238;UBERON:0000483!1.49e-12!309;UBERON:0003914!2.03e-11!118;UBERON:0000481!2.45e-11!347;UBERON:0002100!4.34e-10!216;UBERON:0000914!6.37e-10!83;UBERON:0002329!6.37e-10!83;UBERON:0003077!6.37e-10!83;UBERON:0003059!6.37e-10!83;UBERON:0007282!6.37e-10!83;UBERON:0009618!6.37e-10!83;UBERON:0007285!6.37e-10!83;UBERON:0004290!9.25e-10!70;UBERON:0004119!2.13e-09!169;UBERON:0000925!2.13e-09!169;UBERON:0006595!2.13e-09!169;UBERON:0001637!3.15e-09!42;UBERON:0003509!3.15e-09!42;UBERON:0004572!3.15e-09!42;UBERON:0002049!4.30e-09!79;UBERON:0007798!4.30e-09!79;UBERON:0001981!1.20e-08!60;UBERON:0007500!1.20e-08!60;UBERON:0004537!1.20e-08!60;UBERON:0006965!1.20e-08!60;UBERON:0000055!2.25e-08!69;UBERON:0001048!3.67e-08!168;UBERON:0005911!1.26e-07!82;UBERON:0001007!1.93e-07!155;UBERON:0001555!1.93e-07!155;UBERON:0007026!1.93e-07!155;UBERON:0000922!3.04e-07!612;UBERON:0000466!4.15e-07!126;UBERON:0000475!4.47e-07!365;UBERON:0004573!5.77e-07!33;UBERON:0004571!5.77e-07!33;UBERON:0001134!6.60e-07!61;UBERON:0002036!6.60e-07!61;UBERON:0003082!6.60e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,2.36e-12,148;UBERON:0000486,4.68e-11,83;UBERON:0005256,7.08e-11,122;UBERON:0003914,2.94e-10,117;UBERON:0007503,7.94e-09,78;UBERON:0000119,8.67e-09,309;UBERON:0002329,1.15e-08,71;UBERON:0003059,1.15e-08,71;UBERON:0007282,1.15e-08,71;UBERON:0004290,1.15e-08,71;UBERON:0009618,1.15e-08,71;UBERON:0001637,1.89e-08,42;UBERON:0003509,1.89e-08,42;UBERON:0004572,1.89e-08,42;UBERON:0003077,2.07e-08,72;UBERON:0007285,2.07e-08,72;UBERON:0003104,2.41e-08,160;UBERON:0009142,2.41e-08,160;UBERON:0000483,3.46e-08,306;UBERON:0002100,3.47e-08,199;UBERON:0007524,3.66e-08,73;UBERON:0007500,8.26e-08,59;UBERON:0001981,8.26e-08,59;UBERON:0004537,8.26e-08,59;UBERON:0006965,8.26e-08,59;UBERON:0002049,1.21e-07,78;UBERON:0007798,1.21e-07,78;UBERON:0000055,5.21e-07,68;UBERON:0004573,7.04e-07,33;UBERON:0004571,7.04e-07,33 | |||
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| |||
|short_description=p5@ETV4 | |||
}} |
Revision as of 13:49, 11 September 2013
Short description: | p5@ETV4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ETV4_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 0bp_to_uc002idy.1_5end |
EntrezGene: | ETV4 |
HGNC: | 3493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.27e-16 | 253 |
embryonic cell | 1.14e-14 | 250 |
vascular associated smooth muscle cell | 7.30e-09 | 32 |
electrically responsive cell | 9.15e-09 | 61 |
electrically active cell | 9.15e-09 | 61 |
muscle cell | 3.27e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 2.36e-12 | 148 |
multilaminar epithelium | 4.68e-11 | 83 |
trunk mesenchyme | 7.08e-11 | 122 |
epithelial tube | 2.94e-10 | 117 |
epithelial vesicle | 7.94e-09 | 78 |
cell layer | 8.67e-09 | 309 |
somite | 1.15e-08 | 71 |
presomitic mesoderm | 1.15e-08 | 71 |
presumptive segmental plate | 1.15e-08 | 71 |
dermomyotome | 1.15e-08 | 71 |
trunk paraxial mesoderm | 1.15e-08 | 71 |
artery | 1.89e-08 | 42 |
arterial blood vessel | 1.89e-08 | 42 |
arterial system | 1.89e-08 | 42 |
paraxial mesoderm | 2.07e-08 | 72 |
presumptive paraxial mesoderm | 2.07e-08 | 72 |
mesenchyme | 2.41e-08 | 160 |
entire embryonic mesenchyme | 2.41e-08 | 160 |
epithelium | 3.46e-08 | 306 |
trunk | 3.47e-08 | 199 |
dense mesenchyme tissue | 3.66e-08 | 73 |
epithelial tube open at both ends | 8.26e-08 | 59 |
blood vessel | 8.26e-08 | 59 |
blood vasculature | 8.26e-08 | 59 |
vascular cord | 8.26e-08 | 59 |
vasculature | 1.21e-07 | 78 |
vascular system | 1.21e-07 | 78 |
vessel | 5.21e-07 | 68 |
systemic artery | 7.04e-07 | 33 |
systemic arterial system | 7.04e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.19e-09 | 106 |
cell type cancer | 2.01e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.