FFCP PHASE1:Hg19::chr22:40342907..40342976,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9402|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4563|TSSclassifier=S|UniProt=|association_with_transcript=51bp_to_uc003ayj.1_5end|coexpression_cluster_id=C14|description=CAGE_peak_3_at_GRAP2_5end|id=chr22:40342907..40342976,+|ontology_enrichment_celltype=CL:0000037!9.93e-26!172;CL:0000566!9.93e-26!172;CL:0000988!6.68e-23!182;CL:0002032!1.01e-22!165;CL:0000837!1.01e-22!165;CL:0000763!4.54e-19!112;CL:0000049!4.54e-19!112;CL:0000738!6.77e-19!140;CL:0002057!1.53e-17!42;CL:0000860!1.01e-15!45;CL:0002087!3.80e-15!119;CL:0000766!3.93e-15!76;CL:0002031!1.10e-13!124;CL:0000094!2.41e-11!8;CL:0000839!1.17e-10!70;CL:0002194!5.58e-10!63;CL:0000576!5.58e-10!63;CL:0000040!5.58e-10!63;CL:0000559!5.58e-10!63;CL:0002009!2.10e-09!65;CL:0000557!1.46e-08!71;CL:0000236!1.07e-07!14;CL:0000081!1.26e-07!11;CL:0000625!5.81e-07!11|ontology_enrichment_celltype_v019=CL:0000094;2.06e-24;8!CL:0000081;2.41e-17;11!CL:0000775;1.37e-10;3!CL:0000226;3.35e-10;3!CL:0000842;3.35e-10;3!CL:0000767;4.29e-10;3!CL:0000236;6.18e-10;13!CL:0000764;3.17e-07;2!CL:0000558;3.17e-07;2!CL:0000771;3.76e-07;2|ontology_enrichment_celltype_v019_2=CL:0000094,2.14e-24,8;CL:0000037,2.17e-19,168;CL:0000988,6.87e-18,177;CL:0000081,2.47e-17,11;CL:0002032,8.11e-17,161;CL:0000837,8.11e-17,161;CL:0000763,2.43e-14,108;CL:0000049,2.43e-14,108;CL:0000775,1.38e-10,3;CL:0000738,1.51e-10,136;CL:0000226,3.41e-10,3;CL:0000842,3.41e-10,3;CL:0000767,4.50e-10,3;CL:0000236,2.86e-09,14;CL:0000764,3.08e-07,2;CL:0000765,3.08e-07,2;CL:0000050,3.08e-07,2;CL:0000038,3.08e-07,2;CL:0000558,3.08e-07,2;CL:0000547,3.08e-07,2;CL:0000549,3.08e-07,2;CL:0000550,3.08e-07,2;CL:0000552,3.08e-07,2;CL:0000771,3.70e-07,2|ontology_enrichment_development_v019=UBERON:0004872;6.79e-07;7|ontology_enrichment_disease=DOID:1036!2.35e-08!8|ontology_enrichment_disease_v019=DOID:1036;5.61e-14;8!DOID:8692;8.66e-08;31|ontology_enrichment_disease_v019_2=DOID:1036,5.69e-14,8;DOID:8692,4.19e-08,31|ontology_enrichment_uberon=UBERON:0007023!6.70e-18!115;UBERON:0002390!3.12e-15!102;UBERON:0003061!3.12e-15!102;UBERON:0002193!7.54e-14!112;UBERON:0000178!7.85e-13!15;UBERON:0000179!7.85e-13!15;UBERON:0000463!7.85e-13!15;UBERON:0002371!2.75e-07!80|ontology_enrichment_uberon_v019=UBERON:0000178;9.23e-30;15!UBERON:0000179;9.23e-30;15!UBERON:0000463;9.23e-30;15!UBERON:0002390;3.39e-16;32!UBERON:0002193;1.41e-08;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.39e-30,15;UBERON:0000179,9.39e-30,15;UBERON:0000463,9.39e-30,15;UBERON:0002390,2.12e-09,98;UBERON:0003061,2.12e-09,98;UBERON:0002193,4.62e-08,108|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9952208877831,11.5148819429164,2.16742572642506,0,0,0,0,0,0.587200878669695,1.10799081706375,1.00272223735071,0.434021741431704,0,0,0,0.581592955118259,0.755751887377619,0.485168122375632,0.697287110717054,0,0,0.28769239232215,1.0246428261164,0.47296445977717,1.03423704220986,0,0,0.941211697713023,0,0.224723484445085,0.918251677112708,1.60464513538047,0.639337125799041,0.659702600373432,0.598390972864896,0,0.870627715885752,0.56738522469114,0,0.251248665256743,1.5644487552606,0.434377689410233,1.81619850790011,0.736555271975129,0.316462387440884,0,0.212604299965044,0,0,0.150176892841506,0.16072558669708,0.285012743741249,0,0.182664153764634,1.75996244461323,3.27683166757279,1.77901850772711,0.853460445133014,1.20118796110804,19.5415829584524,1.98313461835459,0.954053754535364,1.1384259382189,0,0.382273228125229,14.5388461436928,14.0127140745384,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,1.27426165729639,0.651083453856419,0,0.301150238155546,0.383959833463255,1.24930726552346,2.13099526839615,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.458426764241994,0,0,0,0,0,1.19245312152671,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0,10.5424333948851,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0.288239906833923,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0.773288812777695,0,0,12.7331194071021,38.8909896965232,38.1262272361153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1279060375852,13.3742804507542,5.65656056358255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.98965494248332,8.10449898177192,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,379.063364096431,365.496585014055,305.330892325351,198.685300731796,183.467573796443,308.024822816541,308.897982100202,356.906329332422,0.1068240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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9402 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=51bp_to_uc003ayj.1_5end | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_3_at_GRAP2_5end | |||
|id=chr22:40342907..40342976,+ | |||
|ontology_enrichment_celltype=CL:0000037!9.93e-26!172;CL:0000566!9.93e-26!172;CL:0000988!6.68e-23!182;CL:0002032!1.01e-22!165;CL:0000837!1.01e-22!165;CL:0000763!4.54e-19!112;CL:0000049!4.54e-19!112;CL:0000738!6.77e-19!140;CL:0002057!1.53e-17!42;CL:0000860!1.01e-15!45;CL:0002087!3.80e-15!119;CL:0000766!3.93e-15!76;CL:0002031!1.10e-13!124;CL:0000094!2.41e-11!8;CL:0000839!1.17e-10!70;CL:0002194!5.58e-10!63;CL:0000576!5.58e-10!63;CL:0000040!5.58e-10!63;CL:0000559!5.58e-10!63;CL:0002009!2.10e-09!65;CL:0000557!1.46e-08!71;CL:0000236!1.07e-07!14;CL:0000081!1.26e-07!11;CL:0000625!5.81e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000094;2.06e-24;8!CL:0000081;2.41e-17;11!CL:0000775;1.37e-10;3!CL:0000226;3.35e-10;3!CL:0000842;3.35e-10;3!CL:0000767;4.29e-10;3!CL:0000236;6.18e-10;13!CL:0000764;3.17e-07;2!CL:0000558;3.17e-07;2!CL:0000771;3.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,2.14e-24,8;CL:0000037,2.17e-19,168;CL:0000988,6.87e-18,177;CL:0000081,2.47e-17,11;CL:0002032,8.11e-17,161;CL:0000837,8.11e-17,161;CL:0000763,2.43e-14,108;CL:0000049,2.43e-14,108;CL:0000775,1.38e-10,3;CL:0000738,1.51e-10,136;CL:0000226,3.41e-10,3;CL:0000842,3.41e-10,3;CL:0000767,4.50e-10,3;CL:0000236,2.86e-09,14;CL:0000764,3.08e-07,2;CL:0000765,3.08e-07,2;CL:0000050,3.08e-07,2;CL:0000038,3.08e-07,2;CL:0000558,3.08e-07,2;CL:0000547,3.08e-07,2;CL:0000549,3.08e-07,2;CL:0000550,3.08e-07,2;CL:0000552,3.08e-07,2;CL:0000771,3.70e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004872;6.79e-07;7 | |||
|ontology_enrichment_disease=DOID:1036!2.35e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:1036;5.61e-14;8!DOID:8692;8.66e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,5.69e-14,8;DOID:8692,4.19e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.70e-18!115;UBERON:0002390!3.12e-15!102;UBERON:0003061!3.12e-15!102;UBERON:0002193!7.54e-14!112;UBERON:0000178!7.85e-13!15;UBERON:0000179!7.85e-13!15;UBERON:0000463!7.85e-13!15;UBERON:0002371!2.75e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.23e-30;15!UBERON:0000179;9.23e-30;15!UBERON:0000463;9.23e-30;15!UBERON:0002390;3.39e-16;32!UBERON:0002193;1.41e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.39e-30,15;UBERON:0000179,9.39e-30,15;UBERON:0000463,9.39e-30,15;UBERON:0002390,2.12e-09,98;UBERON:0003061,2.12e-09,98;UBERON:0002193,4.62e-08,108 | |||
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|short_description=p3@GRAP2 | |||
}} |
Revision as of 12:05, 12 September 2013
Short description: | p3@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GRAP2_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 51bp_to_uc003ayj.1_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 2.14e-24 | 8 |
hematopoietic stem cell | 2.17e-19 | 168 |
hematopoietic cell | 6.87e-18 | 177 |
blood cell | 2.47e-17 | 11 |
hematopoietic oligopotent progenitor cell | 8.11e-17 | 161 |
hematopoietic multipotent progenitor cell | 8.11e-17 | 161 |
myeloid cell | 2.43e-14 | 108 |
common myeloid progenitor | 2.43e-14 | 108 |
neutrophil | 1.38e-10 | 3 |
leukocyte | 1.51e-10 | 136 |
single nucleate cell | 3.41e-10 | 3 |
mononuclear cell | 3.41e-10 | 3 |
basophil | 4.50e-10 | 3 |
B cell | 2.86e-09 | 14 |
erythroid lineage cell | 3.08e-07 | 2 |
erythroblast | 3.08e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 3.08e-07 | 2 |
erythroid progenitor cell | 3.08e-07 | 2 |
reticulocyte | 3.08e-07 | 2 |
proerythroblast | 3.08e-07 | 2 |
basophilic erythroblast | 3.08e-07 | 2 |
polychromatophilic erythroblast | 3.08e-07 | 2 |
orthochromatic erythroblast | 3.08e-07 | 2 |
eosinophil | 3.70e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 9.39e-30 | 15 |
haemolymphatic fluid | 9.39e-30 | 15 |
organism substance | 9.39e-30 | 15 |
hematopoietic system | 2.12e-09 | 98 |
blood island | 2.12e-09 | 98 |
hemolymphoid system | 4.62e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 5.69e-14 | 8 |
myeloid leukemia | 4.19e-08 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.