FFCP PHASE1:Hg19::chr2:129079621..129079634,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C692|description=CAGE_peak_at_chr2:129079621..129079634,+|id=chr2:129079621..129079634,+|ontology_enrichment_celltype=CL:0002057!1.62e-14!42;CL:0000766!9.60e-14!76;CL:0000860!9.78e-13!45;CL:0000839!2.78e-10!70;CL:0000557!5.98e-10!71;CL:0000738!2.32e-09!140;CL:0000763!4.90e-09!112;CL:0000049!4.90e-09!112;CL:0002194!5.26e-09!63;CL:0000576!5.26e-09!63;CL:0000040!5.26e-09!63;CL:0000559!5.26e-09!63;CL:0002009!2.24e-08!65;CL:0002393!4.62e-08!9;CL:0002397!4.62e-08!9;CL:0000988!3.04e-07!182;CL:0000037!8.83e-07!172;CL:0000566!8.83e-07!172|ontology_enrichment_celltype_v019=CL:0000771;2.33e-17;2!CL:0000097;1.08e-15;5!CL:0002393;1.83e-12;6!CL:0002397;1.83e-12;6!CL:0000094;1.12e-09;8!CL:0000766;2.16e-09;69!CL:0000163;6.07e-09;9!CL:0000081;3.65e-07;11|ontology_enrichment_celltype_v019_2=CL:0000766,4.80e-19,72;CL:0000771,1.91e-17,2;CL:0000097,1.08e-15,5;CL:0002028,1.08e-15,5;CL:0000839,1.17e-12,66;CL:0000557,1.92e-12,67;CL:0000763,6.29e-12,108;CL:0000049,6.29e-12,108;CL:0000738,1.80e-10,136;CL:0000094,1.16e-09,8;CL:0000473,1.63e-09,48;CL:0000234,1.63e-09,48;CL:0000163,6.08e-09,9;CL:0000860,1.67e-08,42;CL:0002057,1.67e-08,42;CL:0002393,2.09e-08,9;CL:0002397,2.09e-08,9;CL:0000037,5.65e-08,168;CL:0000988,1.96e-07,177;CL:0002194,2.11e-07,59;CL:0000576,2.11e-07,59;CL:0000040,2.11e-07,59;CL:0000559,2.11e-07,59;CL:0002032,3.31e-07,161;CL:0000837,3.31e-07,161;CL:0000081,3.73e-07,11;CL:0002009,3.95e-07,61|ontology_enrichment_development_v019=CL:0002057;7.63e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001474!3.66e-08!86;UBERON:0002371!5.60e-08!80;UBERON:0004765!9.28e-08!101;UBERON:0001434!9.28e-08!101;UBERON:0002390!7.06e-07!102;UBERON:0003061!7.06e-07!102|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.44e-11,98;UBERON:0003061,2.44e-11,98;UBERON:0002371,8.95e-11,76;UBERON:0002193,4.35e-10,108;UBERON:0001474,7.30e-10,82;UBERON:0004765,7.79e-09,90;UBERON:0002405,1.70e-08,93;UBERON:0001434,8.84e-08,100;UBERON:0003081,3.76e-07,203|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0.522371256399677,0,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0.408001382488506,0.626909442956176,0,0.410623275218653,0.125542639594803,0,0.0821005894499457,0.0787107813136792,1.18009283054671,0.767658796194425,0.77408061658038,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,1.10799081706375,1.00272223735071,1.95309783644267,0.223915474239924,0,0.257575567634187,0.145398238779565,0,0,0.929716147622738,0.411167888021826,0.309706370895104,1.1507695692886,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.564727018627814,0.818718450173537,0.449446968890169,0.612167784741805,0,0.639337125799041,0,0,0.426224750532694,2.32167390902867,2.8369261234557,1.24564449799115,0,0,0.217188844705117,0.605399502633369,0.736555271975129,0,0.422510572623884,0.850417199860174,0.419317291016752,0.44931452458598,0.450530678524519,0.16072558669708,0.285012743741249,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0,0,0,1.12101712596307,0,0.196709770113833,0.786021525498329,0,0,0,0,0,0,0,0,0,0.25618263945135,0.390178042679635,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0,0.267440195783507,0.434473211648397,0,0.670700859703636,0,0,0,0.144846518960824,0,0.973269740605272,0,0,0,0,0.364295288292542,0,0,0,0.132957960518865,0.476981248610684,0,0.74291500265913,0.198762407366705,0.860234595106124,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,1.62028389576352,0,0,0,1.53316637465883,0,0.183201743930407,1.31780417436063,7.75560528296651,0,0,0,0,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0,0,0.570471821544449,0,0.117434498643765,0.161872944368132,0,0,0,0.103325781175765,0,0,0,0,0,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.226864366320042,0.358779271377724,0.427114777637135,0.211931901159562,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,1.26216887122057,0,0.484938170456436,0.355009592516614,0,0.339121184620975,0.193260853163297,0,0.286804595389004,0.243947412259191,0.132529768321485,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0.977424915930974,0,0,0.231860809950154,0.117408694235822,0.144366447761074,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0,0,0,0.616339038092582,5.59785911960085,6.19715799692934,5.6809095041871,0.063497894292169,0.381988425558278,0,1.71072446022705,0.205654985406647,0,0,0.112131084345361,0.87192013766656,0.07333828582095,0.129271715757778,0,0,0.5318762331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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C692 | |||
|description=CAGE_peak_at_chr2:129079621..129079634,+ | |||
|id=chr2:129079621..129079634,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.62e-14!42;CL:0000766!9.60e-14!76;CL:0000860!9.78e-13!45;CL:0000839!2.78e-10!70;CL:0000557!5.98e-10!71;CL:0000738!2.32e-09!140;CL:0000763!4.90e-09!112;CL:0000049!4.90e-09!112;CL:0002194!5.26e-09!63;CL:0000576!5.26e-09!63;CL:0000040!5.26e-09!63;CL:0000559!5.26e-09!63;CL:0002009!2.24e-08!65;CL:0002393!4.62e-08!9;CL:0002397!4.62e-08!9;CL:0000988!3.04e-07!182;CL:0000037!8.83e-07!172;CL:0000566!8.83e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000771;2.33e-17;2!CL:0000097;1.08e-15;5!CL:0002393;1.83e-12;6!CL:0002397;1.83e-12;6!CL:0000094;1.12e-09;8!CL:0000766;2.16e-09;69!CL:0000163;6.07e-09;9!CL:0000081;3.65e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.80e-19,72;CL:0000771,1.91e-17,2;CL:0000097,1.08e-15,5;CL:0002028,1.08e-15,5;CL:0000839,1.17e-12,66;CL:0000557,1.92e-12,67;CL:0000763,6.29e-12,108;CL:0000049,6.29e-12,108;CL:0000738,1.80e-10,136;CL:0000094,1.16e-09,8;CL:0000473,1.63e-09,48;CL:0000234,1.63e-09,48;CL:0000163,6.08e-09,9;CL:0000860,1.67e-08,42;CL:0002057,1.67e-08,42;CL:0002393,2.09e-08,9;CL:0002397,2.09e-08,9;CL:0000037,5.65e-08,168;CL:0000988,1.96e-07,177;CL:0002194,2.11e-07,59;CL:0000576,2.11e-07,59;CL:0000040,2.11e-07,59;CL:0000559,2.11e-07,59;CL:0002032,3.31e-07,161;CL:0000837,3.31e-07,161;CL:0000081,3.73e-07,11;CL:0002009,3.95e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;7.63e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!3.66e-08!86;UBERON:0002371!5.60e-08!80;UBERON:0004765!9.28e-08!101;UBERON:0001434!9.28e-08!101;UBERON:0002390!7.06e-07!102;UBERON:0003061!7.06e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.44e-11,98;UBERON:0003061,2.44e-11,98;UBERON:0002371,8.95e-11,76;UBERON:0002193,4.35e-10,108;UBERON:0001474,7.30e-10,82;UBERON:0004765,7.79e-09,90;UBERON:0002405,1.70e-08,93;UBERON:0001434,8.84e-08,100;UBERON:0003081,3.76e-07,203 | |||
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| |||
|short_description=p@chr2:129079621..129079634,+ | |||
}} |
Revision as of 13:27, 12 September 2013
Short description: | p@chr2:129079621..129079634, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:129079621..129079634, + |
Coexpression cluster: | C692_Mast_Eosinophils_Neutrophils_Basophils_immature_CD4_CD19 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.80e-19 | 72 |
eosinophil | 1.91e-17 | 2 |
mast cell | 1.08e-15 | 5 |
basophil mast progenitor cell | 1.08e-15 | 5 |
myeloid lineage restricted progenitor cell | 1.17e-12 | 66 |
granulocyte monocyte progenitor cell | 1.92e-12 | 67 |
myeloid cell | 6.29e-12 | 108 |
common myeloid progenitor | 6.29e-12 | 108 |
leukocyte | 1.80e-10 | 136 |
granulocyte | 1.16e-09 | 8 |
defensive cell | 1.63e-09 | 48 |
phagocyte | 1.63e-09 | 48 |
endocrine cell | 6.08e-09 | 9 |
classical monocyte | 1.67e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.67e-08 | 42 |
intermediate monocyte | 2.09e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.09e-08 | 9 |
hematopoietic stem cell | 5.65e-08 | 168 |
hematopoietic cell | 1.96e-07 | 177 |
monopoietic cell | 2.11e-07 | 59 |
monocyte | 2.11e-07 | 59 |
monoblast | 2.11e-07 | 59 |
promonocyte | 2.11e-07 | 59 |
hematopoietic oligopotent progenitor cell | 3.31e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.31e-07 | 161 |
blood cell | 3.73e-07 | 11 |
macrophage dendritic cell progenitor | 3.95e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.44e-11 | 98 |
blood island | 2.44e-11 | 98 |
bone marrow | 8.95e-11 | 76 |
hemolymphoid system | 4.35e-10 | 108 |
bone element | 7.30e-10 | 82 |
skeletal element | 7.79e-09 | 90 |
immune system | 1.70e-08 | 93 |
skeletal system | 8.84e-08 | 100 |
lateral plate mesoderm | 3.76e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.