FFCP PHASE1:Hg19::chr2:160143158..160143235,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=151525|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26697|TSSclassifier=S|UniProt=B8ZZF2,D3DPA6,Q8N9V3|association_with_transcript=0bp_to_ENST00000358147,ENST00000409124,NM_001128212,uc002ual.3,uc002uam.3,uc010foo.2_5end|description=CAGE_peak_1_at_WDSUB1_5end|id=chr2:160143158..160143235,-|ontology_enrichment_celltype=CL:0000037!3.83e-11!172;CL:0000566!3.83e-11!172;CL:0002032!5.97e-10!165;CL:0000837!5.97e-10!165;CL:0000988!1.40e-08!182;CL:0000738!3.25e-07!140;CL:0000236!4.79e-07!14;CL:0002031!4.84e-07!124;CL:0000763!9.88e-07!112;CL:0000049!9.88e-07!112|ontology_enrichment_celltype_v019=CL:0000236;2.79e-07;13|ontology_enrichment_celltype_v019_2=CL:0000037,2.07e-11,168;CL:0002032,3.35e-10,161;CL:0000837,3.35e-10,161;CL:0000988,4.92e-09,177;CL:0000738,1.99e-07,136;CL:0002031,2.85e-07,120;CL:0000236,4.79e-07,14;CL:0000763,5.56e-07,108;CL:0000049,5.56e-07,108;CL:0002087,8.97e-07,115|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.29e-15!115;UBERON:0001049!4.54e-11!57;UBERON:0005068!4.54e-11!57;UBERON:0006241!4.54e-11!57;UBERON:0007135!4.54e-11!57;UBERON:0000073!3.03e-10!94;UBERON:0001016!3.03e-10!94;UBERON:0003080!9.64e-10!42;UBERON:0005743!1.87e-09!86;UBERON:0002616!2.45e-09!59;UBERON:0002780!2.89e-09!41;UBERON:0001890!2.89e-09!41;UBERON:0006240!2.89e-09!41;UBERON:0001017!7.87e-09!82;UBERON:0002346!1.31e-08!90;UBERON:0000955!3.45e-08!69;UBERON:0006238!3.45e-08!69;UBERON:0002020!3.69e-08!34;UBERON:0003528!3.69e-08!34;UBERON:0001893!5.24e-08!34;UBERON:0002791!8.29e-08!33;UBERON:0003075!1.91e-07!86;UBERON:0007284!1.91e-07!86;UBERON:0001869!2.73e-07!32|ontology_enrichment_uberon_v019=UBERON:0003528;6.76e-07;34!UBERON:0002020;6.76e-07;34!UBERON:0002780;7.75e-07;41!UBERON:0001890;7.75e-07;41!UBERON:0002791;8.89e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.32e-14,114;UBERON:0001049,1.31e-10,56;UBERON:0005068,1.31e-10,56;UBERON:0006241,1.31e-10,56;UBERON:0007135,1.31e-10,56;UBERON:0000073,6.68e-10,53;UBERON:0002616,6.68e-10,53;UBERON:0002780,2.89e-09,41;UBERON:0001890,2.89e-09,41;UBERON:0003080,2.89e-09,41;UBERON:0006240,2.89e-09,41;UBERON:0001016,3.11e-09,89;UBERON:0002346,7.10e-09,86;UBERON:0001017,1.87e-08,81;UBERON:0003528,3.69e-08,34;UBERON:0002020,3.69e-08,34;UBERON:0001893,5.24e-08,34;UBERON:0000955,8.32e-08,68;UBERON:0006238,8.32e-08,68;UBERON:0003075,1.11e-07,82;UBERON:0007284,1.11e-07,82;UBERON:0002791,1.53e-07,32;UBERON:0001869,2.73e-07,32|phase1_expression=5.63202975738726,5.99481466894753,6.20199378022273,1.0007329835313,6.70441641640932,3.48935409640147,2.53299878168311,2.52687949370732,6.52964070499596,0.982935746006035,1.39560233594486,4.15038607047327,3.9565046734268,8.41611200128317,4.63956326019082,4.03395087871065,2.41077811209591,2.19093027116212,2.43966399395253,1.72369481307503,2.24400760368678,3.44800193625897,4.00730381983479,7.11747010378998,4.6450776650077,3.89708369314551,4.43343183029707,2.91229890860613,7.08055698328027,8.06041736004147,5.57338043937874,3.67768489791571,1.8072355126695,2.9580320813343,4.33816323249689,6.82412315939623,14.9736224060772,3.32397245119126,6.01633342410425,5.20826089718044,15.6740831967947,14.8991086368731,20.6060454107349,13.2312397289404,19.2716731281293,13.5847074265177,6.0431549595478,13.9797081927421,9.91060386864331,4.02769349251011,7.42866048934392,5.67557351732605,4.13694816883942,5.80936215225443,2.70852973188684,9.97684399575805,18.0118059038178,10.562003768919,3.67300670845083,5.45579346029359,3.19668562899521,5.93732340336089,12.3667467725412,6.39337125799041,2.32167390902867,1.70215567407342,1.86846674698672,5.52747063564835,9.38669253156363,3.47502151528187,3.02699751316684,5.52416453981347,3.16462387440884,6.5489138756702,7.01594189884644,10.063614984402,8.98629049171961,8.71025978480737,6.10757229448904,9.9754460309437,7.75775041076451,8.03722276564389,24.6394742245852,22.3916830617474,22.2377313465889,19.2028600154928,18.8186113906926,22.4153451582248,18.5092564379761,16.2189138271012,14.7995371968457,7.04684627245127,9.93910393125595,22.4691258584344,8.40762844472304,12.3790519844286,2.16380747125216,3.14408610199332,1.85041349099558,1.67186495390678,6.51844533267181,2.36723902867367,7.79306913631645,2.45103005147382,3.24066498222321,1.99380505125259,1.89562704635511,1.28091319725675,1.43065282315866,2.79544437826249,2.21080014228679,3.76744011455568,7.41432815810302,6.68852070224283,5.22677619024884,2.71942422474159,11.1133943144557,4.46715679127419,3.03623630423403,7.00843911513013,11.7195021694155,11.4054245333805,6.17357988218868,5.75939750194883,7.49584359314075,5.6826540490564,7.39015197228942,7.05623601286563,6.15112450302067,3.91025890483557,9.75227465255847,5.36560687762909,2.81297636055767,2.89151321907653,5.51471701699479,8.98048417557107,3.1811437882044,5.35298357332899,5.57755421268,3.99112915432615,4.47957407034943,7.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1.86623178009892,6.77840167909354,7.43991198637104,4.87524419753279,6.98941684428889,11.2023469769657,8.92814664427068,8.92337502664816,8.37967376959866,4.13405655849444,17.6650308802807,15.2108442174239,11.2856301981019,3.9811912055916,9.50592531427601,7.08482881627925,14.0477795970293,7.17907274842643,18.9053772166289,8.09139853831349,7.589355344697,5.71077681036618,8.14626063558513,6.01645589073476,0.733714394086716,4.15892398141218,5.33934933654034,6.21323933454091,5.96748666348824,9.92776334210196,3.63069123666336,10.9411961572633,8.64292091788694,5.2407013603231,5.76638736246476,8.10451015420736,7.81078098613847,9.92096623205684,9.44895571889212,9.84554656232795,2.19303106742873,9.42801238939659,19.1699656351986,5.87707167142138,5.89272019466115,21.5221582220047,6.67662164660295,11.8384339502675,5.41084457992097,6.79880526579098,13.0330887172438,7.27276142852099,8.15582392179329,2.71845834033127,3.22571065487001,10.0471158848658,10.5267445243721,2.80272163313789,9.13158720509496,11.8760175170242,24.3653360822396,16.439605160631,6.00451724584361,4.64965701472501,4.69417335216964,4.00855682365126,3.31545862660859,4.4386804044427,6.22133695632683,5.16272830584333,12.0698640745177,12.3559436900779,4.65725755210022,4.35303050233695,10.5470171125869,2.8666168169323,6.59947047606975,5.98716425052982,2.8041122745922,1.29485767437579,5.64645437709359,8.11870101936739,5.82853191670967,3.50909195193158,4.3769170535501,4.1622031772149,2.2589216407792,11.6536947750155,11.4731761110672,4.39892701215285,5.68254857310289,6.1141248526998,9.31563622664841,8.72003224276016,9.61911488863232,9.50548481046675,6.7624916413344,5.26774055532232,7.33074560242858,10.7644672915874,6.19635166734559,4.46384846514144,1.05868461514708,3.5306201343234,8.76403665895821,5.50475140085449,13.1872416499335,4.1020606170228,7.4110724308097,7.41796173578642,10.0515099697926,4.83593523616777,11.5543907157855,3.46101249699031,10.8503125358168,8.52271461316825,8.86889507080059,8.77103935781043,8.28373956323238,12.2220216381344,4.51273570726275,7.95676331291514,7.23503151421682,9.12086383404657,10.6535985737752,7.24995538463335,6.42773964952099,6.26512425409259,7.32481628691123,6.39151616709497,9.48342658344657,7.88257036937055,5.87835219321796,8.89806582821731,6.19638887734205,5.66605422602143,8.64916927019635,3.8259536247158,12.380372121815,0,8.17409339169941,4.69281884806909,11.2462128648237,6.91723503136755,15.9781625804523,7.648404156459,7.05250683067112|short_description=p1@WDSUB1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=151525 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26697 | |||
|TSSclassifier=S | |||
|UniProt=B8ZZF2,D3DPA6,Q8N9V3 | |||
|association_with_transcript=0bp_to_ENST00000358147,ENST00000409124,NM_001128212,uc002ual.3,uc002uam.3,uc010foo.2_5end | |||
|description=CAGE_peak_1_at_WDSUB1_5end | |||
|id=chr2:160143158..160143235,- | |||
|ontology_enrichment_celltype=CL:0000037!3.83e-11!172;CL:0000566!3.83e-11!172;CL:0002032!5.97e-10!165;CL:0000837!5.97e-10!165;CL:0000988!1.40e-08!182;CL:0000738!3.25e-07!140;CL:0000236!4.79e-07!14;CL:0002031!4.84e-07!124;CL:0000763!9.88e-07!112;CL:0000049!9.88e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.79e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.07e-11,168;CL:0002032,3.35e-10,161;CL:0000837,3.35e-10,161;CL:0000988,4.92e-09,177;CL:0000738,1.99e-07,136;CL:0002031,2.85e-07,120;CL:0000236,4.79e-07,14;CL:0000763,5.56e-07,108;CL:0000049,5.56e-07,108;CL:0002087,8.97e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.29e-15!115;UBERON:0001049!4.54e-11!57;UBERON:0005068!4.54e-11!57;UBERON:0006241!4.54e-11!57;UBERON:0007135!4.54e-11!57;UBERON:0000073!3.03e-10!94;UBERON:0001016!3.03e-10!94;UBERON:0003080!9.64e-10!42;UBERON:0005743!1.87e-09!86;UBERON:0002616!2.45e-09!59;UBERON:0002780!2.89e-09!41;UBERON:0001890!2.89e-09!41;UBERON:0006240!2.89e-09!41;UBERON:0001017!7.87e-09!82;UBERON:0002346!1.31e-08!90;UBERON:0000955!3.45e-08!69;UBERON:0006238!3.45e-08!69;UBERON:0002020!3.69e-08!34;UBERON:0003528!3.69e-08!34;UBERON:0001893!5.24e-08!34;UBERON:0002791!8.29e-08!33;UBERON:0003075!1.91e-07!86;UBERON:0007284!1.91e-07!86;UBERON:0001869!2.73e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.76e-07;34!UBERON:0002020;6.76e-07;34!UBERON:0002780;7.75e-07;41!UBERON:0001890;7.75e-07;41!UBERON:0002791;8.89e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.32e-14,114;UBERON:0001049,1.31e-10,56;UBERON:0005068,1.31e-10,56;UBERON:0006241,1.31e-10,56;UBERON:0007135,1.31e-10,56;UBERON:0000073,6.68e-10,53;UBERON:0002616,6.68e-10,53;UBERON:0002780,2.89e-09,41;UBERON:0001890,2.89e-09,41;UBERON:0003080,2.89e-09,41;UBERON:0006240,2.89e-09,41;UBERON:0001016,3.11e-09,89;UBERON:0002346,7.10e-09,86;UBERON:0001017,1.87e-08,81;UBERON:0003528,3.69e-08,34;UBERON:0002020,3.69e-08,34;UBERON:0001893,5.24e-08,34;UBERON:0000955,8.32e-08,68;UBERON:0006238,8.32e-08,68;UBERON:0003075,1.11e-07,82;UBERON:0007284,1.11e-07,82;UBERON:0002791,1.53e-07,32;UBERON:0001869,2.73e-07,32 | |||
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| |||
|short_description=p1@WDSUB1 | |||
}} |
Revision as of 14:17, 12 September 2013
Short description: | p1@WDSUB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_WDSUB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000358147, ENST00000409124, NM_001128212, uc002ual.3, uc002uam.3, uc010foo.2_5end |
EntrezGene: | WDSUB1 |
HGNC: | 26697 |
UniProt: | B8ZZF2D3DPA6Q8N9V3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.07e-11 | 168 |
hematopoietic oligopotent progenitor cell | 3.35e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.35e-10 | 161 |
hematopoietic cell | 4.92e-09 | 177 |
leukocyte | 1.99e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 2.85e-07 | 120 |
B cell | 4.79e-07 | 14 |
myeloid cell | 5.56e-07 | 108 |
common myeloid progenitor | 5.56e-07 | 108 |
nongranular leukocyte | 8.97e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.32e-14 | 114 |
neural tube | 1.31e-10 | 56 |
neural rod | 1.31e-10 | 56 |
future spinal cord | 1.31e-10 | 56 |
neural keel | 1.31e-10 | 56 |
regional part of nervous system | 6.68e-10 | 53 |
regional part of brain | 6.68e-10 | 53 |
regional part of forebrain | 2.89e-09 | 41 |
forebrain | 2.89e-09 | 41 |
anterior neural tube | 2.89e-09 | 41 |
future forebrain | 2.89e-09 | 41 |
nervous system | 3.11e-09 | 89 |
neurectoderm | 7.10e-09 | 86 |
central nervous system | 1.87e-08 | 81 |
brain grey matter | 3.69e-08 | 34 |
gray matter | 3.69e-08 | 34 |
telencephalon | 5.24e-08 | 34 |
brain | 8.32e-08 | 68 |
future brain | 8.32e-08 | 68 |
neural plate | 1.11e-07 | 82 |
presumptive neural plate | 1.11e-07 | 82 |
regional part of telencephalon | 1.53e-07 | 32 |
cerebral hemisphere | 2.73e-07 | 32 |
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