FFCP PHASE1:Hg19::chr2:182756867..182756886,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6744|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11319|TSSclassifier=S|UniProt=E7END2,F2Z295|association_with_transcript=-36bp_to_ENST00000428267,ENST00000440623,ENST00000454579_5end|description=CAGE_peak_8_at_SSFA2_5end|id=chr2:182756867..182756886,+|ontology_enrichment_celltype=CL:0000557!3.47e-23!71;CL:0000860!2.26e-22!45;CL:0002057!3.69e-21!42;CL:0002009!6.20e-21!65;CL:0000766!3.67e-20!76;CL:0000839!6.46e-20!70;CL:0002194!1.02e-19!63;CL:0000576!1.02e-19!63;CL:0000040!1.02e-19!63;CL:0000559!1.02e-19!63;CL:0000763!5.92e-17!112;CL:0000049!5.92e-17!112|ontology_enrichment_celltype_v019=CL:0000860;1.58e-22;33!CL:0002057;1.58e-22;33!CL:0000473;3.56e-18;39!CL:0000234;3.56e-18;39!CL:0000576;3.05e-14;48!CL:0000766;2.96e-11;69|ontology_enrichment_celltype_v019_2=CL:0000860,2.22e-27,42;CL:0002057,2.22e-27,42;CL:0000473,4.58e-26,48;CL:0000234,4.58e-26,48;CL:0000557,4.88e-26,67;CL:0002009,1.13e-23,61;CL:0000766,1.33e-23,72;CL:0000839,2.74e-22,66;CL:0002194,4.81e-22,59;CL:0000576,4.81e-22,59;CL:0000040,4.81e-22,59;CL:0000559,4.81e-22,59;CL:0000763,2.94e-16,108;CL:0000049,2.94e-16,108|ontology_enrichment_development_v019=CL:0002057;1.07e-19;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.26e-18!80;UBERON:0001474!1.27e-16!86;UBERON:0004765!8.06e-16!101;UBERON:0001434!8.06e-16!101;UBERON:0002390!2.00e-13!102;UBERON:0003061!2.00e-13!102;UBERON:0000062!5.97e-13!511;UBERON:0000467!7.23e-13!625;UBERON:0000480!9.67e-13!626;UBERON:0002193!2.45e-12!112;UBERON:0003081!7.72e-11!216;UBERON:0002405!2.66e-10!115;UBERON:0000468!2.90e-10!659;UBERON:0002050!8.77e-10!605;UBERON:0005423!8.77e-10!605;UBERON:0000923!1.08e-09!604;UBERON:0005291!1.08e-09!604;UBERON:0006598!1.08e-09!604;UBERON:0002532!1.08e-09!604;UBERON:0000926!1.25e-09!448;UBERON:0004120!1.25e-09!448;UBERON:0006603!1.25e-09!448;UBERON:0000922!4.93e-09!612;UBERON:0002204!9.37e-09!167|ontology_enrichment_uberon_v019=UBERON:0005631;5.82e-09;10!UBERON:0000158;5.82e-09;10!UBERON:0001737;7.86e-07;9!UBERON:0001557;7.86e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.29e-22,76;UBERON:0001474,2.27e-20,82;UBERON:0004765,2.12e-19,90;UBERON:0002405,1.64e-16,93;UBERON:0001434,1.99e-16,100;UBERON:0002390,3.41e-15,98;UBERON:0003061,3.41e-15,98;UBERON:0002193,6.04e-14,108;UBERON:0003081,5.10e-11,203;UBERON:0002204,4.10e-09,167;UBERON:0005631,8.97e-08,14;UBERON:0000158,8.97e-08,14;UBERON:0002050,1.52e-07,564;UBERON:0001737,5.06e-07,9;UBERON:0000923,6.53e-07,560;UBERON:0010316,6.53e-07,560;UBERON:0005291,6.53e-07,560;UBERON:0006598,6.53e-07,560;UBERON:0010317,6.53e-07,560;UBERON:0002532,6.53e-07,560|phase1_expression=0.726713517082227,1.2846031433459,0.563817616383885,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0.491467873003018,0,2.83973783769224,1.31883489114227,0.247532705920093,0.662794751455832,2.6893005858071,1.20538905604795,3.65155045193687,1.46379839637152,0.246242116153576,0,0,0.286235987131057,0.821246550437305,0.753255837568817,0,0,0.0787107813136792,1.18009283054671,1.15148819429164,1.54816123316076,0,0.30120591877825,0,0.0774672005803016,0,1.17440175733939,3.32397245119126,3.00816671205213,1.30206522429511,0.671746422719773,0.647787332037959,0.515151135268373,2.03557534291391,5.29026321164333,6.30718559088322,3.0215774797739,6.57868620834921,5.57471467611186,2.8769239232215,5.12321413058201,6.85798466676897,3.44745680736619,4.51839278508678,8.12558919566051,2.82363509313907,4.63940455098338,5.61808711112712,3.97909060082173,8.98601275813062,5.75403413219137,4.28806690242731,6.58230070151385,8.52449501065388,3.19230162491442,10.2129340444405,3.73693349397345,3.76872997885115,3.65038042894141,6.08128765174327,1.21079900526674,6.99727508376373,6.0127853613768,1.69004229049553,2.97646019951061,2.09658645508376,0.786300418025466,1.50176892841506,2.25015821375912,0.855038231223746,1.59133341759272,1.46131323011707,0,0,0,0,0,0,0,0,0,1.17447437874188,0.382273228125229,0,1.12101712596307,1.31692042387539,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0,0,4.02420515822182,0.255725123687061,2.53007406669196,0,1.88300474649071,0.795285947051099,0.486634870302636,3.49778823507051,3.32594096193846,3.86473057049755,0.196468613246569,0,0.370784442784429,4.21911611751088,4.17911369518241,2.6591592103773,0.476981248610684,0,0,0.993812036833525,1.72046919021225,1.38856200643038,1.13061588384802,0.419499436209906,1.10047216776027,0.835979866147242,2.58416759169329,0.71153252537342,2.34304428935269,0.805658634218294,0,0.976248230192678,2.20597848207521,0,1.7859945656816,1.12264686313085,1.23872628531654,1.53316637465883,0,1.46561395144326,0,0,0.436094052142534,1.49091585508596,0.886413581652058,0.662045904066094,0.573673241497627,0.709336764396714,0.5606776001423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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6744 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11319 | |||
|TSSclassifier=S | |||
|UniProt=E7END2,F2Z295 | |||
|association_with_transcript=-36bp_to_ENST00000428267,ENST00000440623,ENST00000454579_5end | |||
|description=CAGE_peak_8_at_SSFA2_5end | |||
|id=chr2:182756867..182756886,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.47e-23!71;CL:0000860!2.26e-22!45;CL:0002057!3.69e-21!42;CL:0002009!6.20e-21!65;CL:0000766!3.67e-20!76;CL:0000839!6.46e-20!70;CL:0002194!1.02e-19!63;CL:0000576!1.02e-19!63;CL:0000040!1.02e-19!63;CL:0000559!1.02e-19!63;CL:0000763!5.92e-17!112;CL:0000049!5.92e-17!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.58e-22;33!CL:0002057;1.58e-22;33!CL:0000473;3.56e-18;39!CL:0000234;3.56e-18;39!CL:0000576;3.05e-14;48!CL:0000766;2.96e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.22e-27,42;CL:0002057,2.22e-27,42;CL:0000473,4.58e-26,48;CL:0000234,4.58e-26,48;CL:0000557,4.88e-26,67;CL:0002009,1.13e-23,61;CL:0000766,1.33e-23,72;CL:0000839,2.74e-22,66;CL:0002194,4.81e-22,59;CL:0000576,4.81e-22,59;CL:0000040,4.81e-22,59;CL:0000559,4.81e-22,59;CL:0000763,2.94e-16,108;CL:0000049,2.94e-16,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.07e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.26e-18!80;UBERON:0001474!1.27e-16!86;UBERON:0004765!8.06e-16!101;UBERON:0001434!8.06e-16!101;UBERON:0002390!2.00e-13!102;UBERON:0003061!2.00e-13!102;UBERON:0000062!5.97e-13!511;UBERON:0000467!7.23e-13!625;UBERON:0000480!9.67e-13!626;UBERON:0002193!2.45e-12!112;UBERON:0003081!7.72e-11!216;UBERON:0002405!2.66e-10!115;UBERON:0000468!2.90e-10!659;UBERON:0002050!8.77e-10!605;UBERON:0005423!8.77e-10!605;UBERON:0000923!1.08e-09!604;UBERON:0005291!1.08e-09!604;UBERON:0006598!1.08e-09!604;UBERON:0002532!1.08e-09!604;UBERON:0000926!1.25e-09!448;UBERON:0004120!1.25e-09!448;UBERON:0006603!1.25e-09!448;UBERON:0000922!4.93e-09!612;UBERON:0002204!9.37e-09!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.82e-09;10!UBERON:0000158;5.82e-09;10!UBERON:0001737;7.86e-07;9!UBERON:0001557;7.86e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.29e-22,76;UBERON:0001474,2.27e-20,82;UBERON:0004765,2.12e-19,90;UBERON:0002405,1.64e-16,93;UBERON:0001434,1.99e-16,100;UBERON:0002390,3.41e-15,98;UBERON:0003061,3.41e-15,98;UBERON:0002193,6.04e-14,108;UBERON:0003081,5.10e-11,203;UBERON:0002204,4.10e-09,167;UBERON:0005631,8.97e-08,14;UBERON:0000158,8.97e-08,14;UBERON:0002050,1.52e-07,564;UBERON:0001737,5.06e-07,9;UBERON:0000923,6.53e-07,560;UBERON:0010316,6.53e-07,560;UBERON:0005291,6.53e-07,560;UBERON:0006598,6.53e-07,560;UBERON:0010317,6.53e-07,560;UBERON:0002532,6.53e-07,560 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0.563817616383885,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0.491467873003018,0,2.83973783769224,1.31883489114227,0.247532705920093,0.662794751455832,2.6893005858071,1.20538905604795,3.65155045193687,1.46379839637152,0.246242116153576,0,0,0.286235987131057,0.821246550437305,0.753255837568817,0,0,0.0787107813136792,1.18009283054671,1.15148819429164,1.54816123316076,0,0.30120591877825,0,0.0774672005803016,0,1.17440175733939,3.32397245119126,3.00816671205213,1.30206522429511,0.671746422719773,0.647787332037959,0.515151135268373,2.03557534291391,5.29026321164333,6.30718559088322,3.0215774797739,6.57868620834921,5.57471467611186,2.8769239232215,5.12321413058201,6.85798466676897,3.44745680736619,4.51839278508678,8.12558919566051,2.82363509313907,4.63940455098338,5.61808711112712,3.97909060082173,8.98601275813062,5.75403413219137,4.28806690242731,6.58230070151385,8.52449501065388,3.19230162491442,10.2129340444405,3.73693349397345,3.76872997885115,3.65038042894141,6.08128765174327,1.21079900526674,6.99727508376373,6.0127853613768,1.69004229049553,2.97646019951061,2.09658645508376,0.786300418025466,1.50176892841506,2.25015821375912,0.855038231223746,1.59133341759272,1.46131323011707,0,0,0,0,0,0,0,0,0,1.17447437874188,0.382273228125229,0,1.12101712596307,1.31692042387539,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0,0,4.02420515822182,0.255725123687061,2.53007406669196,0,1.88300474649071,0.795285947051099,0.486634870302636,3.49778823507051,3.32594096193846,3.86473057049755,0.196468613246569,0,0.370784442784429,4.21911611751088,4.17911369518241,2.6591592103773,0.476981248610684,0,0,0.993812036833525,1.72046919021225,1.38856200643038,1.13061588384802,0.419499436209906,1.10047216776027,0.835979866147242,2.58416759169329,0.71153252537342,2.34304428935269,0.805658634218294,0,0.976248230192678,2.20597848207521,0,1.7859945656816,1.12264686313085,1.23872628531654,1.53316637465883,0,1.46561395144326,0,0,0.436094052142534,1.49091585508596,0.886413581652058,0.662045904066094,0.573673241497627,0.709336764396714,0.560677600142307,0,0.24666754841716,0.933633106199299,1.0776853765575,1.63461903113459,0.302714855289863,0.576175924479999,0.234321431833797,1.24864030732128,1.1409436430889,0.448346041655403,0.352303495931295,0.323745888736263,0,1.42907919878425,0.982674538494144,0.309977343527296,7.12801714369232,1.48360157567134,0,0,0.336672227908132,1.25118519871964,0.831192346452549,0.877955241761676,0.30648779579902,1.05166641234618,0.680593098960126,1.07633781413317,0,0.635795703478686,0.300091096084402,0.515262646192195,0.515281080091258,0.558350568994769,0.675105328965065,0.779496041289589,0.504867548488229,0.276149695926898,0.161646056818812,1.06502877754984,1.20902517873168,0.67824236924195,1.73934767846967,0.545492241181669,4.30206893083506,0,0,0.116193942869518,0.414644220061482,0.252320850875628,0,0,0,1.38134921352481,0.464367928031979,0,1.77460200059766,2.19160097101532,3.85617647813571,2.31617342738027,2.83243277320128,4.03360052488864,2.15730093056263,2.74710051175484,3.46272441251751,0.738155454624648,0,0,0,0,0,1.18157981336281,0,0.614942192715568,0.686271241194102,1.31700342490351,0,0.804231779293047,0.648119116109707,0,0,1.44331342025273,0.695582429850461,2.7003999674239,0.144366447761074,1.38895653772983,0.761016608938393,3.95102198979638,6.86788929675898,0.984868024349589,2.80805118167085,2.22946743433092,2.81201501960331,1.6798212819886,2.41017665312057,0.806026704325635,0.290633938513962,0,40.3983855074674,0.880484340132261,1.4512968087854,3.45887888200707,1.51490920111656,0,0.381988425558278,0,0,0.308482478109971,0.300343057843917,0.571652865261156,0.224262168690721,0,0.5867062865676,1.42198887333556,0,0,2.6593811658487,4.16029747645464,0,0,0,0.857867961948885,0,0,0.977208552881205,1.06617584622764,0,0,0,0.799783929456456,0,2.00902836572851,0,0,0,1.42636905040718,1.73737568001095,0.821905290201534,0.537182889719687,0.224170287987055,0.394061520403854,0,0.256686072559497,5.33598710867173,1.30139853857622,0,0.335032530668698,0,0,2.99161459204025,2.07207756718018,0.24538298343828,0,0,0.207970861530807,1.07057393278297,0,0.819989904948992,0.300946099727719,2.27407504055985,0,0,0.553107505625109,1.30325421702124,0.391602314925481,0.686286847621712,0.620304078368662,1.07857100409308,0.74709290462411,0,1.66435439510497,0.604780586659361,0.744323423456331,0.460385919864187,0.280660094433074,0.384417447767103,2.04682899626681,0.804269605718038,1.48418066444991,0.462629081407967,0.532685175939381,0.821271560138091,2.59627214591811,0.813472649219715,0.120859449591622,1.40354529212299,0.368323955743585,0.229628896329213,1.45672934405374,0.917870904715969,0.451199612907412,0.462092022626489,0.784349769176855,0,0.949964660035881,0,0.340187410553031,1.0795795805107,1.54227252690289,0.812839312631559,1.505069321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| |||
|short_description=p8@SSFA2 | |||
}} |
Revision as of 15:30, 12 September 2013
Short description: | p8@SSFA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SSFA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -36bp_to_ENST00000428267, ENST00000440623, ENST00000454579_5end |
EntrezGene: | SSFA2 |
HGNC: | 11319 |
UniProt: | E7END2F2Z295 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.22e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.22e-27 | 42 |
defensive cell | 4.58e-26 | 48 |
phagocyte | 4.58e-26 | 48 |
granulocyte monocyte progenitor cell | 4.88e-26 | 67 |
macrophage dendritic cell progenitor | 1.13e-23 | 61 |
myeloid leukocyte | 1.33e-23 | 72 |
myeloid lineage restricted progenitor cell | 2.74e-22 | 66 |
monopoietic cell | 4.81e-22 | 59 |
monocyte | 4.81e-22 | 59 |
monoblast | 4.81e-22 | 59 |
promonocyte | 4.81e-22 | 59 |
myeloid cell | 2.94e-16 | 108 |
common myeloid progenitor | 2.94e-16 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.29e-22 | 76 |
bone element | 2.27e-20 | 82 |
skeletal element | 2.12e-19 | 90 |
immune system | 1.64e-16 | 93 |
skeletal system | 1.99e-16 | 100 |
hematopoietic system | 3.41e-15 | 98 |
blood island | 3.41e-15 | 98 |
hemolymphoid system | 6.04e-14 | 108 |
lateral plate mesoderm | 5.10e-11 | 203 |
musculoskeletal system | 4.10e-09 | 167 |
extraembryonic membrane | 8.97e-08 | 14 |
membranous layer | 8.97e-08 | 14 |
embryonic structure | 1.52e-07 | 564 |
larynx | 5.06e-07 | 9 |
germ layer | 6.53e-07 | 560 |
germ layer / neural crest | 6.53e-07 | 560 |
embryonic tissue | 6.53e-07 | 560 |
presumptive structure | 6.53e-07 | 560 |
germ layer / neural crest derived structure | 6.53e-07 | 560 |
epiblast (generic) | 6.53e-07 | 560 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.