FFCP PHASE1:Mm9::chr12:83346385..83346395,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:83346385..83346395,-|id=chr12:83346385..83346395,-|ontology_enrichment_celltype=CL:0000988!2.85e-22!32;CL:0002032!2.85e-22!32;CL:0000037!2.85e-22!32;CL:0000566!2.85e-22!32;CL:0000837!2.85e-22!32;CL:0000838!1.83e-15!12;CL:0002320!1.63e-14!46;CL:0000134!1.63e-14!46;CL:0000542!3.46e-14!13;CL:0000051!3.46e-14!13;CL:0000084!5.00e-13!11;CL:0000827!5.00e-13!11;CL:0002031!5.81e-13!25;CL:0000034!6.13e-12!97;CL:0000219!6.90e-12!54;CL:0000738!1.41e-10!17;CL:0002087!1.41e-10!17;CL:0000049!7.96e-10!19;CL:0000063!3.81e-09!66;CL:0000723!4.48e-09!91;CL:0000048!4.48e-09!91;CL:0000144!1.05e-08!121;CL:0000012!1.05e-08!121;CL:0000791!2.58e-08!9;CL:0000789!2.58e-08!9;CL:0002420!2.58e-08!9;CL:0002419!2.58e-08!9;CL:0000790!2.58e-08!9;CL:0000763!9.16e-07!16|ontology_enrichment_celltype_v019_2=CL:0000557,6.17e-10,7;CL:0000625,2.44e-08,1;CL:0000355,4.11e-08,9;CL:0000988,8.00e-08,32;CL:0002032,8.00e-08,32;CL:0000037,8.00e-08,32;CL:0000837,8.00e-08,32|ontology_enrichment_disease=DOID:0060100!2.44e-11!3;DOID:4045!2.44e-11!3|ontology_enrichment_disease_v019_2=DOID:0060100,3.98e-23,3;DOID:4045,3.98e-23,3;DOID:0050686,6.82e-12,6|ontology_enrichment_uberon=UBERON:0002384!1.63e-14!46;UBERON:0002204!5.39e-07!32;UBERON:0002371!9.16e-07!16|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.11e-08,9;UBERON:0002036,4.11e-08,9;UBERON:0002385,4.11e-08,9;UBERON:0000486,4.11e-08,9;UBERON:0007503,4.11e-08,9;UBERON:0001015,4.11e-08,9;UBERON:0002329,4.11e-08,9;UBERON:0003082,4.11e-08,9;UBERON:0003059,4.11e-08,9;UBERON:0007282,4.11e-08,9;UBERON:0004290,4.11e-08,9;UBERON:0009618,4.11e-08,9;UBERON:0002204,4.39e-08,32;UBERON:0000383,2.37e-07,10;UBERON:0007524,9.96e-07,11;UBERON:0003077,9.96e-07,11;UBERON:0007285,9.96e-07,11|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0,0.411343300817216,0.42438965179803,0,0.496454756004426,1.56719873483361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.811543814318,10.1573594788094,5.75876118371178,36.4703522579229,32.1031377930469,9.71020706062307,0,0,0,0,0,0,0,0,0,0.503347818173209,0.725362142011344,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07833612055328,0,0.762421362438388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91549231119264,2.83082697826187,3.12579849335152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.69975726161829,0.552799895217695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:83346385..83346395,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:83346385..83346395,- | |||
|id=chr12:83346385..83346395,- | |||
|ontology_enrichment_celltype=CL:0000988!2.85e-22!32;CL:0002032!2.85e-22!32;CL:0000037!2.85e-22!32;CL:0000566!2.85e-22!32;CL:0000837!2.85e-22!32;CL:0000838!1.83e-15!12;CL:0002320!1.63e-14!46;CL:0000134!1.63e-14!46;CL:0000542!3.46e-14!13;CL:0000051!3.46e-14!13;CL:0000084!5.00e-13!11;CL:0000827!5.00e-13!11;CL:0002031!5.81e-13!25;CL:0000034!6.13e-12!97;CL:0000219!6.90e-12!54;CL:0000738!1.41e-10!17;CL:0002087!1.41e-10!17;CL:0000049!7.96e-10!19;CL:0000063!3.81e-09!66;CL:0000723!4.48e-09!91;CL:0000048!4.48e-09!91;CL:0000144!1.05e-08!121;CL:0000012!1.05e-08!121;CL:0000791!2.58e-08!9;CL:0000789!2.58e-08!9;CL:0002420!2.58e-08!9;CL:0002419!2.58e-08!9;CL:0000790!2.58e-08!9;CL:0000763!9.16e-07!16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,6.17e-10,7;CL:0000625,2.44e-08,1;CL:0000355,4.11e-08,9;CL:0000988,8.00e-08,32;CL:0002032,8.00e-08,32;CL:0000037,8.00e-08,32;CL:0000837,8.00e-08,32 | |||
|ontology_enrichment_disease=DOID:0060100!2.44e-11!3;DOID:4045!2.44e-11!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,3.98e-23,3;DOID:4045,3.98e-23,3;DOID:0050686,6.82e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0002384!1.63e-14!46;UBERON:0002204!5.39e-07!32;UBERON:0002371!9.16e-07!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.11e-08,9;UBERON:0002036,4.11e-08,9;UBERON:0002385,4.11e-08,9;UBERON:0000486,4.11e-08,9;UBERON:0007503,4.11e-08,9;UBERON:0001015,4.11e-08,9;UBERON:0002329,4.11e-08,9;UBERON:0003082,4.11e-08,9;UBERON:0003059,4.11e-08,9;UBERON:0007282,4.11e-08,9;UBERON:0004290,4.11e-08,9;UBERON:0009618,4.11e-08,9;UBERON:0002204,4.39e-08,32;UBERON:0000383,2.37e-07,10;UBERON:0007524,9.96e-07,11;UBERON:0003077,9.96e-07,11;UBERON:0007285,9.96e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0,0.411343300817216,0.42438965179803,0,0.496454756004426,1.56719873483361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.811543814318,10.1573594788094,5.75876118371178,36.4703522579229,32.1031377930469,9.71020706062307,0,0,0,0,0,0,0,0,0,0.503347818173209,0.725362142011344,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07833612055328,0,0.762421362438388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91549231119264,2.83082697826187,3.12579849335152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.69975726161829,0.552799895217695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:83346385..83346395,- | |||
}} |
Revision as of 23:24, 12 September 2013
Short description: | p@chr12:83346385..83346395, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:83346385..83346395, - |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 6.17e-10 | 7 |
CD8-positive, alpha-beta T cell | 2.44e-08 | 1 |
multi-potent skeletal muscle stem cell | 4.11e-08 | 9 |
hematopoietic cell | 8.00e-08 | 32 |
hematopoietic oligopotent progenitor cell | 8.00e-08 | 32 |
hematopoietic stem cell | 8.00e-08 | 32 |
hematopoietic multipotent progenitor cell | 8.00e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 4.11e-08 | 9 |
striated muscle tissue | 4.11e-08 | 9 |
muscle tissue | 4.11e-08 | 9 |
multilaminar epithelium | 4.11e-08 | 9 |
epithelial vesicle | 4.11e-08 | 9 |
musculature | 4.11e-08 | 9 |
somite | 4.11e-08 | 9 |
myotome | 4.11e-08 | 9 |
presomitic mesoderm | 4.11e-08 | 9 |
presumptive segmental plate | 4.11e-08 | 9 |
dermomyotome | 4.11e-08 | 9 |
trunk paraxial mesoderm | 4.11e-08 | 9 |
musculoskeletal system | 4.39e-08 | 32 |
musculature of body | 2.37e-07 | 10 |
dense mesenchyme tissue | 9.96e-07 | 11 |
paraxial mesoderm | 9.96e-07 | 11 |
presumptive paraxial mesoderm | 9.96e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 3.98e-23 | 3 |
muscle cancer | 3.98e-23 | 3 |
organ system cancer | 6.82e-12 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.