FFCP PHASE1:Mm9::chr13:55122905..55122917,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=212032|HGNC=|MCL_coexpression_id=3|UniProt=Q3TRM8,E9Q3Z4|association_with_transcript=-159bp_to_ENSMUST00000052949,NM_001033245,NM_001206392_5end|description=CAGE_peak_4_at_Hk3_5end|id=chr13:55122905..55122917,-|ontology_enrichment_celltype=CL:0000049!1.70e-10!19;CL:0000557!3.64e-10!7|ontology_enrichment_celltype_v019_2=CL:0000557,1.26e-10,7;CL:0000355,1.05e-08,9|ontology_enrichment_disease=DOID:0060100!6.21e-10!3;DOID:4045!6.21e-10!3|ontology_enrichment_disease_v019_2=DOID:0060100,7.81e-25,3;DOID:4045,7.81e-25,3;DOID:0050686,9.15e-13,6|ontology_enrichment_uberon=UBERON:0002204!7.07e-09!32;UBERON:0002371!8.07e-08!16;UBERON:0001474!4.55e-07!22;UBERON:0004765!4.55e-07!22;UBERON:0001434!4.55e-07!22;UBERON:0002106!5.30e-07!6;UBERON:0004457!5.30e-07!6;UBERON:0000042!5.30e-07!6;UBERON:0004854!5.30e-07!6;UBERON:0009034!5.30e-07!6;UBERON:0002095!5.30e-07!6;UBERON:0004782!5.30e-07!6;UBERON:0003281!5.30e-07!6;UBERON:0009664!5.30e-07!6;UBERON:0002296!5.30e-07!6;UBERON:0005602!5.30e-07!6;UBERON:0001179!5.30e-07!6;UBERON:0006293!5.30e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0002204,8.33e-12,32;UBERON:0001134,1.05e-08,9;UBERON:0002036,1.05e-08,9;UBERON:0002385,1.05e-08,9;UBERON:0000486,1.05e-08,9;UBERON:0007503,1.05e-08,9;UBERON:0001015,1.05e-08,9;UBERON:0002329,1.05e-08,9;UBERON:0003082,1.05e-08,9;UBERON:0003059,1.05e-08,9;UBERON:0007282,1.05e-08,9;UBERON:0004290,1.05e-08,9;UBERON:0009618,1.05e-08,9;UBERON:0002371,3.87e-08,16;UBERON:0000383,6.86e-08,10;UBERON:0007524,3.21e-07,11;UBERON:0003077,3.21e-07,11;UBERON:0007285,3.21e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9744805528441,9.37602413428561,14.1351410872926,18.2351761289614,14.3439551841274,15.5363312969969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97773272513395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0,0.838705871541442,0.599902730993408,0.635351135365324,0,0,0,0,0,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,1.28673953557358,0.568326998791185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,1.50791283939272,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0.185194527369712,0.188368457004691,0.27338845544205,0,0.339956859987711,1.25956307091292,0.276399947608848,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0.695603506861264|short_description=p4@Hk3}} | ||
|EntrezGene=212032 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=Q3TRM8,E9Q3Z4 | |||
|association_with_transcript=-159bp_to_ENSMUST00000052949,NM_001033245,NM_001206392_5end | |||
|description=CAGE_peak_4_at_Hk3_5end | |||
|id=chr13:55122905..55122917,- | |||
|ontology_enrichment_celltype=CL:0000049!1.70e-10!19;CL:0000557!3.64e-10!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.26e-10,7;CL:0000355,1.05e-08,9 | |||
|ontology_enrichment_disease=DOID:0060100!6.21e-10!3;DOID:4045!6.21e-10!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,7.81e-25,3;DOID:4045,7.81e-25,3;DOID:0050686,9.15e-13,6 | |||
|ontology_enrichment_uberon=UBERON:0002204!7.07e-09!32;UBERON:0002371!8.07e-08!16;UBERON:0001474!4.55e-07!22;UBERON:0004765!4.55e-07!22;UBERON:0001434!4.55e-07!22;UBERON:0002106!5.30e-07!6;UBERON:0004457!5.30e-07!6;UBERON:0000042!5.30e-07!6;UBERON:0004854!5.30e-07!6;UBERON:0009034!5.30e-07!6;UBERON:0002095!5.30e-07!6;UBERON:0004782!5.30e-07!6;UBERON:0003281!5.30e-07!6;UBERON:0009664!5.30e-07!6;UBERON:0002296!5.30e-07!6;UBERON:0005602!5.30e-07!6;UBERON:0001179!5.30e-07!6;UBERON:0006293!5.30e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,8.33e-12,32;UBERON:0001134,1.05e-08,9;UBERON:0002036,1.05e-08,9;UBERON:0002385,1.05e-08,9;UBERON:0000486,1.05e-08,9;UBERON:0007503,1.05e-08,9;UBERON:0001015,1.05e-08,9;UBERON:0002329,1.05e-08,9;UBERON:0003082,1.05e-08,9;UBERON:0003059,1.05e-08,9;UBERON:0007282,1.05e-08,9;UBERON:0004290,1.05e-08,9;UBERON:0009618,1.05e-08,9;UBERON:0002371,3.87e-08,16;UBERON:0000383,6.86e-08,10;UBERON:0007524,3.21e-07,11;UBERON:0003077,3.21e-07,11;UBERON:0007285,3.21e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9744805528441,9.37602413428561,14.1351410872926,18.2351761289614,14.3439551841274,15.5363312969969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97773272513395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0,0.838705871541442,0.599902730993408,0.635351135365324,0,0,0,0,0,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,1.28673953557358,0.568326998791185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,1.50791283939272,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0.185194527369712,0.188368457004691,0.27338845544205,0,0.339956859987711,1.25956307091292,0.276399947608848,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0.695603506861264 | |||
|short_description=p4@Hk3 | |||
}} |
Revision as of 00:49, 13 September 2013
Short description: | p4@Hk3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Hk3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -159bp_to_ENSMUST00000052949, NM_001033245, NM_001206392_5end |
EntrezGene: | Hk3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.26e-10 | 7 |
multi-potent skeletal muscle stem cell | 1.05e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 8.33e-12 | 32 |
skeletal muscle tissue | 1.05e-08 | 9 |
striated muscle tissue | 1.05e-08 | 9 |
muscle tissue | 1.05e-08 | 9 |
multilaminar epithelium | 1.05e-08 | 9 |
epithelial vesicle | 1.05e-08 | 9 |
musculature | 1.05e-08 | 9 |
somite | 1.05e-08 | 9 |
myotome | 1.05e-08 | 9 |
presomitic mesoderm | 1.05e-08 | 9 |
presumptive segmental plate | 1.05e-08 | 9 |
dermomyotome | 1.05e-08 | 9 |
trunk paraxial mesoderm | 1.05e-08 | 9 |
bone marrow | 3.87e-08 | 16 |
musculature of body | 6.86e-08 | 10 |
dense mesenchyme tissue | 3.21e-07 | 11 |
paraxial mesoderm | 3.21e-07 | 11 |
presumptive paraxial mesoderm | 3.21e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 7.81e-25 | 3 |
muscle cancer | 7.81e-25 | 3 |
organ system cancer | 9.15e-13 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.