FFCP PHASE1:Hg19::chr4:138414465..138414468,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C313|description=CAGE_peak_at_chr4:138414465..138414468,-|id=chr4:138414465..138414468,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.72e-07!57;UBERON:0005068!3.72e-07!57;UBERON:0006241!3.72e-07!57;UBERON:0007135!3.72e-07!57|ontology_enrichment_uberon_v019=UBERON:0002420;1.18e-08;9!UBERON:0007245;1.18e-08;9!UBERON:0010009;1.18e-08;9!UBERON:0010011;1.18e-08;9!UBERON:0000454;1.18e-08;9!UBERON:0000073;4.79e-08;53!UBERON:0002616;4.79e-08;53!UBERON:0002780;8.21e-08;41!UBERON:0001890;8.21e-08;41!UBERON:0003528;1.13e-07;34!UBERON:0002020;1.13e-07;34!UBERON:0002791;1.19e-07;32!UBERON:0009663;9.04e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.39e-12,53;UBERON:0002616,7.39e-12,53;UBERON:0001049,1.36e-11,56;UBERON:0005068,1.36e-11,56;UBERON:0006241,1.36e-11,56;UBERON:0007135,1.36e-11,56;UBERON:0002780,4.06e-10,41;UBERON:0001890,4.06e-10,41;UBERON:0003080,4.06e-10,41;UBERON:0006240,4.06e-10,41;UBERON:0003528,5.34e-09,34;UBERON:0002020,5.34e-09,34;UBERON:0002420,8.41e-09,9;UBERON:0007245,8.41e-09,9;UBERON:0010009,8.41e-09,9;UBERON:0010011,8.41e-09,9;UBERON:0000454,8.41e-09,9;UBERON:0000955,1.03e-08,68;UBERON:0006238,1.03e-08,68;UBERON:0002791,1.08e-08,32;UBERON:0001017,1.54e-08,81;UBERON:0001893,6.88e-08,34;UBERON:0003075,9.09e-08,82;UBERON:0007284,9.09e-08,82;UBERON:0002346,1.06e-07,86;UBERON:0001016,1.63e-07,89;UBERON:0001869,1.79e-07,32;UBERON:0009663,9.55e-07,7|phase1_expression=0,0,0,1.0007329835313,0,5.23403114460221,5.06599756336621,0,0.522371256399677,0,2.79120467188971,0,0.527533956456907,0,0.331397375727916,0.672325146451775,0.602694528023977,0,0.487932798790507,0,0.816002764977012,1.88072832886853,0,0.547497700291537,0.251085279189606,1.29902789771517,1.39571002064908,1.81034797021462,0,0,0,2.75826367343678,0.90361775633475,1.10926203050036,0,0,0,0.553995408531877,3.20871115952227,0.868043482863407,0,0,0,0.726991193897824,0,1.21292030593908,3.25400651667958,2.46700732813095,0.929119112685311,2.8769239232215,2.30544635876191,0,1.03423704220986,0.645484683583826,0,0.752969358170419,0.272906150057846,0,1.83650335422542,0,0.639337125799041,7.25672860410775,0.598390972864896,2.13112375266347,1.45104619314292,1.70215567407342,2.4912889959823,0.502497330513487,1.0429658368404,0.434377689410233,0,0,0,0.422510572623884,0,0.419317291016752,0.112328631146495,0.150176892841506,0,0,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,2.27685187643779,2.93618594685469,7.64546456250458,0,0,0.526768169550154,0,2.35806457649499,1.85041349099558,0.334372990781356,0,0,0,0,0.589211814949674,0.664601683750863,0,0.512365278902701,0.130059347559878,1.47994114143309,3.31620021343018,0,0.296573126324121,0.267540828089713,2.09071047609954,0.453237370790265,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,1.06976078313403,0.434473211648397,4.87613732627923,2.01210257911091,0,0,0,0.434539556882471,0,0.486634870302636,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0.531831842075461,0,0,0,0,2.58070378531837,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0,0,0,0.488124115096339,0,1.62028389576352,0,0.22452937262617,0.112611480483322,3.06633274931766,0,0.183201743930407,0,0,0,0,0,0,6.3104056564739,0,0,0,0.49333509683432,0,0.404132016209064,0,0,1.15235184896,0,0.312160076830321,0,0.448346041655403,0.587172493218824,0.161872944368132,0,0,0.122834317311768,0,0,0.247266929278557,0,2.87447256726495,0,0.125118519871964,0,0.877955241761676,0.30648779579902,0,0,2.15267562826634,0,0,3.60109315301283,0,2.83404594050192,0,0,0,1.7670364197088,0,0,4.26011511019937,0,0,0,0,0,1.21973706129595,0.927708378250397,0.813357600086629,1.14027160516907,0.252320850875628,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0,0,0,0.217879444092406,0,0.134831308160164,0.196221465125346,0,2.21446636387394,0,0,0,0,2.94848165003288,0.590789906681404,2.20731549707325,0,0,0,0,0.301586917234893,0,0,1.03993478527958,0,0,0,0,0,1.33177906564219,4.74122638775565,4.29243081047436,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.925447434329912,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,1.50677127429638,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0.197030760201927,1.07813787429759,0.385029108839245,0,0,8.50617694055465,0,1.91381625495949,0.749007023947182,2.99161459204025,0,0,1.50051156317903,1.08506009479894,0,0,0.315404830067869,0.234282829985426,0,2.27407504055985,2.0694614258501,0,0,0,0,2.40200396667599,0,0.431428401637234,0.853820462427555,0.606255142892519,1.66435439510497,0,0,0,0.28066009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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C313 | |||
|description=CAGE_peak_at_chr4:138414465..138414468,- | |||
|id=chr4:138414465..138414468,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.72e-07!57;UBERON:0005068!3.72e-07!57;UBERON:0006241!3.72e-07!57;UBERON:0007135!3.72e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002420;1.18e-08;9!UBERON:0007245;1.18e-08;9!UBERON:0010009;1.18e-08;9!UBERON:0010011;1.18e-08;9!UBERON:0000454;1.18e-08;9!UBERON:0000073;4.79e-08;53!UBERON:0002616;4.79e-08;53!UBERON:0002780;8.21e-08;41!UBERON:0001890;8.21e-08;41!UBERON:0003528;1.13e-07;34!UBERON:0002020;1.13e-07;34!UBERON:0002791;1.19e-07;32!UBERON:0009663;9.04e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.39e-12,53;UBERON:0002616,7.39e-12,53;UBERON:0001049,1.36e-11,56;UBERON:0005068,1.36e-11,56;UBERON:0006241,1.36e-11,56;UBERON:0007135,1.36e-11,56;UBERON:0002780,4.06e-10,41;UBERON:0001890,4.06e-10,41;UBERON:0003080,4.06e-10,41;UBERON:0006240,4.06e-10,41;UBERON:0003528,5.34e-09,34;UBERON:0002020,5.34e-09,34;UBERON:0002420,8.41e-09,9;UBERON:0007245,8.41e-09,9;UBERON:0010009,8.41e-09,9;UBERON:0010011,8.41e-09,9;UBERON:0000454,8.41e-09,9;UBERON:0000955,1.03e-08,68;UBERON:0006238,1.03e-08,68;UBERON:0002791,1.08e-08,32;UBERON:0001017,1.54e-08,81;UBERON:0001893,6.88e-08,34;UBERON:0003075,9.09e-08,82;UBERON:0007284,9.09e-08,82;UBERON:0002346,1.06e-07,86;UBERON:0001016,1.63e-07,89;UBERON:0001869,1.79e-07,32;UBERON:0009663,9.55e-07,7 | |||
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| |||
|short_description=p@chr4:138414465..138414468,- | |||
}} |
Revision as of 02:26, 13 September 2013
Short description: | p@chr4:138414465..138414468, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:138414465..138414468, - |
Coexpression cluster: | C313_blood_CD19_Adipocyte_acute_Osteoblast_Cardiac_Neurons |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 7.39e-12 | 53 |
regional part of brain | 7.39e-12 | 53 |
neural tube | 1.36e-11 | 56 |
neural rod | 1.36e-11 | 56 |
future spinal cord | 1.36e-11 | 56 |
neural keel | 1.36e-11 | 56 |
regional part of forebrain | 4.06e-10 | 41 |
forebrain | 4.06e-10 | 41 |
anterior neural tube | 4.06e-10 | 41 |
future forebrain | 4.06e-10 | 41 |
brain grey matter | 5.34e-09 | 34 |
gray matter | 5.34e-09 | 34 |
basal ganglion | 8.41e-09 | 9 |
nuclear complex of neuraxis | 8.41e-09 | 9 |
aggregate regional part of brain | 8.41e-09 | 9 |
collection of basal ganglia | 8.41e-09 | 9 |
cerebral subcortex | 8.41e-09 | 9 |
brain | 1.03e-08 | 68 |
future brain | 1.03e-08 | 68 |
regional part of telencephalon | 1.08e-08 | 32 |
central nervous system | 1.54e-08 | 81 |
telencephalon | 6.88e-08 | 34 |
neural plate | 9.09e-08 | 82 |
presumptive neural plate | 9.09e-08 | 82 |
neurectoderm | 1.06e-07 | 86 |
nervous system | 1.63e-07 | 89 |
cerebral hemisphere | 1.79e-07 | 32 |
telencephalic nucleus | 9.55e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.