FFCP PHASE1:Mm9::chr14:66600252..66600263,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=290|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr14:66600252..66600263,+|id=chr14:66600252..66600263,+|ontology_enrichment_celltype=CL:0000181!3.76e-07!5;CL:0000417!3.76e-07!5;CL:0000668!3.76e-07!5;CL:0000412!3.76e-07!5;CL:0000182!3.76e-07!5|ontology_enrichment_celltype_v019_2=CL:0000068,1.96e-19,3;CL:0002202,1.96e-19,3;CL:0000069,1.96e-19,3;CL:0002632,1.96e-19,3;CL:0002368,1.96e-19,3;CL:0000307,1.96e-19,3;CL:0000377,1.96e-19,3;CL:0000182,4.40e-11,5;CL:0000223,1.47e-10,20;CL:0002610,2.06e-08,3;CL:0000066,2.27e-08,25;CL:0000057,2.43e-07,1;CL:0000632,2.43e-07,1;CL:0000213,3.67e-07,1;CL:0002078,3.67e-07,1;CL:0000115,3.67e-07,1;CL:0002262,3.67e-07,1;CL:1000398,3.67e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002021!1.26e-09!10;UBERON:0000411!1.26e-09!10;UBERON:0001950!1.26e-09!10;UBERON:0002619!1.39e-09!17;UBERON:0001017!1.46e-09!73;UBERON:0005743!1.46e-09!73;UBERON:0000955!1.90e-09!50;UBERON:0006238!1.90e-09!50;UBERON:0000073!4.78e-09!75;UBERON:0001016!4.78e-09!75;UBERON:0002020!5.11e-09!34;UBERON:0000033!6.94e-09!63;UBERON:0002616!1.01e-08!49;UBERON:0000956!2.73e-08!21;UBERON:0001869!2.73e-08!21;UBERON:0000203!2.73e-08!21;UBERON:0002791!4.44e-08!29;UBERON:0003528!4.44e-08!29;UBERON:0001893!4.44e-08!29;UBERON:0004121!1.89e-07!102;UBERON:0000924!1.89e-07!102;UBERON:0006601!1.89e-07!102;UBERON:0001049!2.23e-07!52;UBERON:0005068!2.23e-07!52;UBERON:0006241!2.23e-07!52;UBERON:0007135!2.23e-07!52;UBERON:0004111!7.75e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.96e-19,3;UBERON:0001005,1.96e-19,3;UBERON:0007196,1.96e-19,3;UBERON:0001558,1.96e-19,3;UBERON:0002021,1.21e-09,10;UBERON:0000411,1.21e-09,10;UBERON:0001950,1.21e-09,10;UBERON:0004684,2.06e-08,3;UBERON:0002275,2.06e-08,3;UBERON:0002394,3.67e-07,1;UBERON:0001281,3.67e-07,1;UBERON:0000353,3.67e-07,1;UBERON:0003497,3.67e-07,1;UBERON:0003909,3.67e-07,1;UBERON:0003928,3.67e-07,1;UBERON:0003835,3.67e-07,1;UBERON:0003513,3.67e-07,1;UBERON:0001280,3.67e-07,1;UBERON:0004647,3.67e-07,1;UBERON:0002294,3.67e-07,1;UBERON:0001173,3.67e-07,1;UBERON:0004912,3.67e-07,1;UBERON:0005171,3.67e-07,1|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.340173160604279,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0.439372365468944,0.777719596297134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,1.15265491596466,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,1.10115880999389,1.14918604276669,0.614426133024974,0,0,0,0.558365998002762,0.56276261003168,0.763991238884051,0.294628585473668,0.284743361598206,0,0,0,1.44932244350839,2.58127163094416,2.719885334831,1.07940638327563,0.649776417447669,0.896053774194671,0.140444420131752,0,0,0,0.563373679106722,0,0,0,9.95858788651585,5.57391704045217,10.6160133453104,0.11418387971906,0,0.148442139064825,0,0,0,0.301445281105245,0,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0.585561594023094,0,0,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0.41557608911912,0,0.203678727700633,0.124406970610093,4.54900965180614,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0.232533944750408,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0,0,0.156998727841375,0.246794327843601,0.296452627087149,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0,0.390438744296638,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0.209088296014469,0.436725127492355,0,0.165306911450672,0.26175594198403,0,0,0,0.448549638131936,0.165458490457098,0,0.904118764344118,0,0,0,0.419437377702843,0.241584120826006,0.288030006257865,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0.167884616364078,0,0,0,0,0.501572104035363,0.564751842617067,0.460325236507177,0,0.859265911718438,1.37016503954128,1.5107877947794,1.35004500046361,0.45032120322422,1.81256963593682,0.51776031175182,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr14:66600252..66600263,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=290 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr14:66600252..66600263,+ | |||
|id=chr14:66600252..66600263,+ | |||
|ontology_enrichment_celltype=CL:0000181!3.76e-07!5;CL:0000417!3.76e-07!5;CL:0000668!3.76e-07!5;CL:0000412!3.76e-07!5;CL:0000182!3.76e-07!5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.96e-19,3;CL:0002202,1.96e-19,3;CL:0000069,1.96e-19,3;CL:0002632,1.96e-19,3;CL:0002368,1.96e-19,3;CL:0000307,1.96e-19,3;CL:0000377,1.96e-19,3;CL:0000182,4.40e-11,5;CL:0000223,1.47e-10,20;CL:0002610,2.06e-08,3;CL:0000066,2.27e-08,25;CL:0000057,2.43e-07,1;CL:0000632,2.43e-07,1;CL:0000213,3.67e-07,1;CL:0002078,3.67e-07,1;CL:0000115,3.67e-07,1;CL:0002262,3.67e-07,1;CL:1000398,3.67e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!1.26e-09!10;UBERON:0000411!1.26e-09!10;UBERON:0001950!1.26e-09!10;UBERON:0002619!1.39e-09!17;UBERON:0001017!1.46e-09!73;UBERON:0005743!1.46e-09!73;UBERON:0000955!1.90e-09!50;UBERON:0006238!1.90e-09!50;UBERON:0000073!4.78e-09!75;UBERON:0001016!4.78e-09!75;UBERON:0002020!5.11e-09!34;UBERON:0000033!6.94e-09!63;UBERON:0002616!1.01e-08!49;UBERON:0000956!2.73e-08!21;UBERON:0001869!2.73e-08!21;UBERON:0000203!2.73e-08!21;UBERON:0002791!4.44e-08!29;UBERON:0003528!4.44e-08!29;UBERON:0001893!4.44e-08!29;UBERON:0004121!1.89e-07!102;UBERON:0000924!1.89e-07!102;UBERON:0006601!1.89e-07!102;UBERON:0001049!2.23e-07!52;UBERON:0005068!2.23e-07!52;UBERON:0006241!2.23e-07!52;UBERON:0007135!2.23e-07!52;UBERON:0004111!7.75e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.96e-19,3;UBERON:0001005,1.96e-19,3;UBERON:0007196,1.96e-19,3;UBERON:0001558,1.96e-19,3;UBERON:0002021,1.21e-09,10;UBERON:0000411,1.21e-09,10;UBERON:0001950,1.21e-09,10;UBERON:0004684,2.06e-08,3;UBERON:0002275,2.06e-08,3;UBERON:0002394,3.67e-07,1;UBERON:0001281,3.67e-07,1;UBERON:0000353,3.67e-07,1;UBERON:0003497,3.67e-07,1;UBERON:0003909,3.67e-07,1;UBERON:0003928,3.67e-07,1;UBERON:0003835,3.67e-07,1;UBERON:0003513,3.67e-07,1;UBERON:0001280,3.67e-07,1;UBERON:0004647,3.67e-07,1;UBERON:0002294,3.67e-07,1;UBERON:0001173,3.67e-07,1;UBERON:0004912,3.67e-07,1;UBERON:0005171,3.67e-07,1 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.340173160604279,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0.439372365468944,0.777719596297134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,1.15265491596466,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,1.10115880999389,1.14918604276669,0.614426133024974,0,0,0,0.558365998002762,0.56276261003168,0.763991238884051,0.294628585473668,0.284743361598206,0,0,0,1.44932244350839,2.58127163094416,2.719885334831,1.07940638327563,0.649776417447669,0.896053774194671,0.140444420131752,0,0,0,0.563373679106722,0,0,0,9.95858788651585,5.57391704045217,10.6160133453104,0.11418387971906,0,0.148442139064825,0,0,0,0.301445281105245,0,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0.585561594023094,0,0,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0.41557608911912,0,0.203678727700633,0.124406970610093,4.54900965180614,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0.232533944750408,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0,0,0.156998727841375,0.246794327843601,0.296452627087149,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0,0.390438744296638,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0.209088296014469,0.436725127492355,0,0.165306911450672,0.26175594198403,0,0,0,0.448549638131936,0.165458490457098,0,0.904118764344118,0,0,0,0.419437377702843,0.241584120826006,0.288030006257865,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0.167884616364078,0,0,0,0,0.501572104035363,0.564751842617067,0.460325236507177,0,0.859265911718438,1.37016503954128,1.5107877947794,1.35004500046361,0.45032120322422,1.81256963593682,0.51776031175182,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr14:66600252..66600263,+ | |||
}} |
Revision as of 02:49, 13 September 2013
Short description: | p@chr14:66600252..66600263, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:66600252..66600263, + |
Coexpression cluster: | MCL_coexpression_mm9:290 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.96e-19 | 3 |
epithelial cell of tracheobronchial tree | 1.96e-19 | 3 |
branched duct epithelial cell | 1.96e-19 | 3 |
epithelial cell of lower respiratory tract | 1.96e-19 | 3 |
respiratory epithelial cell | 1.96e-19 | 3 |
tracheal epithelial cell | 1.96e-19 | 3 |
tracheoblast | 1.96e-19 | 3 |
hepatocyte | 4.40e-11 | 5 |
endodermal cell | 1.47e-10 | 20 |
raphe nuclei neuron | 2.06e-08 | 3 |
epithelial cell | 2.27e-08 | 25 |
fibroblast | 2.43e-07 | 1 |
hepatic stellate cell | 2.43e-07 | 1 |
lining cell | 3.67e-07 | 1 |
meso-epithelial cell | 3.67e-07 | 1 |
endothelial cell | 3.67e-07 | 1 |
endothelial cell of sinusoid | 3.67e-07 | 1 |
endothelial cell of hepatic sinusoid | 3.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
trachea | 1.96e-19 | 3 |
respiratory airway | 1.96e-19 | 3 |
tracheobronchial tree | 1.96e-19 | 3 |
lower respiratory tract | 1.96e-19 | 3 |
occipital lobe | 1.21e-09 | 10 |
visual cortex | 1.21e-09 | 10 |
neocortex | 1.21e-09 | 10 |
raphe nuclei | 2.06e-08 | 3 |
reticular formation | 2.06e-08 | 3 |
bile duct | 3.67e-07 | 1 |
hepatic sinusoid | 3.67e-07 | 1 |
parenchyma | 3.67e-07 | 1 |
abdomen blood vessel | 3.67e-07 | 1 |
sinusoid | 3.67e-07 | 1 |
digestive system duct | 3.67e-07 | 1 |
abdominal segment blood vessel | 3.67e-07 | 1 |
trunk blood vessel | 3.67e-07 | 1 |
liver parenchyma | 3.67e-07 | 1 |
liver lobule | 3.67e-07 | 1 |
biliary system | 3.67e-07 | 1 |
biliary tree | 3.67e-07 | 1 |
biliary bud | 3.67e-07 | 1 |
hepatic duct | 3.67e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.