FFCP PHASE1:Mm9::chr14:76814736..76814781,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21807|HGNC=|MCL_coexpression_id=108|UniProt=D3Z0V7|association_with_transcript=0bp_to_ENSMUST00000110888,uc007urh.1_5end|description=CAGE_peak_4_at_Tsc22d1_5end|id=chr14:76814736..76814781,+|ontology_enrichment_celltype=CL:0000221!2.23e-16!44;CL:0000133!2.23e-16!44;CL:0002319!5.93e-16!43;CL:0000540!2.47e-14!33;CL:0000047!2.47e-14!33;CL:0000031!2.47e-14!33;CL:0000404!2.47e-14!33;CL:0000055!1.73e-12!50;CL:0000393!2.21e-11!39;CL:0000211!2.21e-11!39;CL:0000117!1.34e-10!23;CL:0000337!1.34e-10!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.91e-16,44;CL:0000133,1.91e-16,44;CL:0002319,5.09e-16,43;CL:0000540,2.16e-14,33;CL:0000047,2.16e-14,33;CL:0000031,2.16e-14,33;CL:0000404,2.16e-14,33;CL:0000393,1.99e-11,39;CL:0000211,1.99e-11,39;CL:0000117,1.22e-10,23;CL:0000337,1.22e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.13e-20!73;UBERON:0005743!1.13e-20!73;UBERON:0000073!7.32e-20!75;UBERON:0001016!7.32e-20!75;UBERON:0004121!3.14e-18!102;UBERON:0000924!3.14e-18!102;UBERON:0006601!3.14e-18!102;UBERON:0002346!9.69e-15!71;UBERON:0003075!9.69e-15!71;UBERON:0007284!9.69e-15!71;UBERON:0001049!1.06e-12!52;UBERON:0005068!1.06e-12!52;UBERON:0006241!1.06e-12!52;UBERON:0007135!1.06e-12!52;UBERON:0000033!1.36e-12!63;UBERON:0003056!3.34e-12!49;UBERON:0002020!4.29e-11!34;UBERON:0002780!1.81e-10!39;UBERON:0001890!1.81e-10!39;UBERON:0006240!1.81e-10!39;UBERON:0003080!2.28e-10!40;UBERON:0000955!2.46e-10!50;UBERON:0006238!2.46e-10!50;UBERON:0002616!5.11e-10!49;UBERON:0000153!6.91e-09!94;UBERON:0000468!2.30e-08!333;UBERON:0002791!3.45e-08!29;UBERON:0003528!3.45e-08!29;UBERON:0001893!3.45e-08!29;UBERON:0007811!1.77e-07!86;UBERON:0000922!8.36e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.25e-21,73;UBERON:0001016,6.02e-20,75;UBERON:0004121,5.90e-19,95;UBERON:0000924,5.90e-19,95;UBERON:0006601,5.90e-19,95;UBERON:0002346,5.47e-16,64;UBERON:0003075,5.47e-16,64;UBERON:0007284,5.47e-16,64;UBERON:0010371,1.10e-13,73;UBERON:0010314,1.62e-13,92;UBERON:0000073,7.20e-13,54;UBERON:0001049,9.38e-13,52;UBERON:0005068,9.38e-13,52;UBERON:0006241,9.38e-13,52;UBERON:0007135,9.38e-13,52;UBERON:0003056,2.98e-12,49;UBERON:0002020,3.87e-11,34;UBERON:0002780,1.65e-10,39;UBERON:0001890,1.65e-10,39;UBERON:0006240,1.65e-10,39;UBERON:0003080,2.07e-10,40;UBERON:0000955,2.14e-10,47;UBERON:0006238,2.14e-10,47;UBERON:0002616,4.49e-10,46;UBERON:0003528,3.22e-08,29;UBERON:0002791,3.22e-08,29;UBERON:0001893,3.22e-08,29;UBERON:0000922,1.27e-07,320|phase1_expression=10.4096750618116,2.09385244583617,1.81999695755814,0,0.500895729946347,1.00727563147134,1.16806320297763,2.84071311571468,1.97104211012333,2.80877431586392,0.68487187290202,1.67521533890206,0.856003649656029,1.48614684112296,0.333109761815663,0.404950534779652,0,0.630924330716475,0.274228867211478,0,3.99703463710028,0.0992909512008853,0.261199789138935,0.47997726838022,0.91763712426868,0,0.86152399231815,0.646413698057667,0.190023419456374,0.756090389279792,1.99557459589774,1.27006134691926,0,0,0.866554859253824,0.166234645358492,0.612508068787107,0,0,0,0,0.683045484958446,0,2.01434908760924,2.02753862439029,3.12029478674859,4.69434806608824,15.2617609466313,13.6205433295373,13.6100929351998,7.8392396110203,21.5628846547457,0,0.725362142011344,0.336093799142464,3.34437266846731,4.29800159908135,4.12537673821954,31.3590514332377,34.3844136526821,23.4517619297286,6.09920157724438,7.11435836888911,2.2497492932035,1.97773272513395,0.7104801149461,12.583204641773,18.8266969607562,33.8028136125637,34.9665380279079,27.9732198597338,23.9946826899195,21.6451170132581,25.9680494335703,21.2776945660485,21.1420320920305,8.8092704799511,5.87361755191863,4.45458946443106,33.2353445080089,24.793151416253,25.0038417867245,3.90856198601933,5.06486349028512,6.26472815884921,34.7661730858928,24.6303007782448,27.9599168737951,2.95332153999418,3.09843396437821,1.15945795480671,0.860423876981386,0,0,0,0,3.37066608316204,3.40860645156115,3.11743205523443,2.12003744706204,13.3801248787846,2.56652954828636,2.54805239706646,7.11066703153331,0.865964164044856,0.506719730950197,0.505524445014783,2.05530983494308,0.258937883647172,2.22663208597237,7.98032503124225,8.22056791442781,4.84292544237723,3.16517545160507,7.64326596382081,1.13099932196708,3.70792451601561,2.02439099687876,1.76922110389975,4.85300549842228,1.98757366614354,4.363877278217,1.86391761218122,4.68449275218475,7.33063473847093,0.255457055208591,2.87556298814209,2.39961092397363,1.14363204365758,5.39246301857362,8.23501085073528,24.2512899577828,5.56237824615285,6.90431734791892,5.61027720310812,5.353961681236,16.1924588522003,2.36373244159177,2.52722758433675,1.68353484709179,18.3469824577412,11.2652031172402,15.3052810334547,11.4535661555143,15.7844678031081,10.7615525039274,10.5882948752494,3.62184719034622,13.5807835547691,19.856138417621,15.4836989264275,8.76782929710299,15.0145514581823,10.447564995665,6.58502836505419,9.75267907410617,1.40442637462647,1.28673953557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| ||
|EntrezGene=21807 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|UniProt=D3Z0V7 | |||
|association_with_transcript=0bp_to_ENSMUST00000110888,uc007urh.1_5end | |||
|description=CAGE_peak_4_at_Tsc22d1_5end | |||
|id=chr14:76814736..76814781,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.23e-16!44;CL:0000133!2.23e-16!44;CL:0002319!5.93e-16!43;CL:0000540!2.47e-14!33;CL:0000047!2.47e-14!33;CL:0000031!2.47e-14!33;CL:0000404!2.47e-14!33;CL:0000055!1.73e-12!50;CL:0000393!2.21e-11!39;CL:0000211!2.21e-11!39;CL:0000117!1.34e-10!23;CL:0000337!1.34e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.91e-16,44;CL:0000133,1.91e-16,44;CL:0002319,5.09e-16,43;CL:0000540,2.16e-14,33;CL:0000047,2.16e-14,33;CL:0000031,2.16e-14,33;CL:0000404,2.16e-14,33;CL:0000393,1.99e-11,39;CL:0000211,1.99e-11,39;CL:0000117,1.22e-10,23;CL:0000337,1.22e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.13e-20!73;UBERON:0005743!1.13e-20!73;UBERON:0000073!7.32e-20!75;UBERON:0001016!7.32e-20!75;UBERON:0004121!3.14e-18!102;UBERON:0000924!3.14e-18!102;UBERON:0006601!3.14e-18!102;UBERON:0002346!9.69e-15!71;UBERON:0003075!9.69e-15!71;UBERON:0007284!9.69e-15!71;UBERON:0001049!1.06e-12!52;UBERON:0005068!1.06e-12!52;UBERON:0006241!1.06e-12!52;UBERON:0007135!1.06e-12!52;UBERON:0000033!1.36e-12!63;UBERON:0003056!3.34e-12!49;UBERON:0002020!4.29e-11!34;UBERON:0002780!1.81e-10!39;UBERON:0001890!1.81e-10!39;UBERON:0006240!1.81e-10!39;UBERON:0003080!2.28e-10!40;UBERON:0000955!2.46e-10!50;UBERON:0006238!2.46e-10!50;UBERON:0002616!5.11e-10!49;UBERON:0000153!6.91e-09!94;UBERON:0000468!2.30e-08!333;UBERON:0002791!3.45e-08!29;UBERON:0003528!3.45e-08!29;UBERON:0001893!3.45e-08!29;UBERON:0007811!1.77e-07!86;UBERON:0000922!8.36e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.25e-21,73;UBERON:0001016,6.02e-20,75;UBERON:0004121,5.90e-19,95;UBERON:0000924,5.90e-19,95;UBERON:0006601,5.90e-19,95;UBERON:0002346,5.47e-16,64;UBERON:0003075,5.47e-16,64;UBERON:0007284,5.47e-16,64;UBERON:0010371,1.10e-13,73;UBERON:0010314,1.62e-13,92;UBERON:0000073,7.20e-13,54;UBERON:0001049,9.38e-13,52;UBERON:0005068,9.38e-13,52;UBERON:0006241,9.38e-13,52;UBERON:0007135,9.38e-13,52;UBERON:0003056,2.98e-12,49;UBERON:0002020,3.87e-11,34;UBERON:0002780,1.65e-10,39;UBERON:0001890,1.65e-10,39;UBERON:0006240,1.65e-10,39;UBERON:0003080,2.07e-10,40;UBERON:0000955,2.14e-10,47;UBERON:0006238,2.14e-10,47;UBERON:0002616,4.49e-10,46;UBERON:0003528,3.22e-08,29;UBERON:0002791,3.22e-08,29;UBERON:0001893,3.22e-08,29;UBERON:0000922,1.27e-07,320 | |||
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| |||
|short_description=p4@Tsc22d1 | |||
}} |
Revision as of 03:07, 13 September 2013
Short description: | p4@Tsc22d1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tsc22d1_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000110888, uc007urh.1_5end |
EntrezGene: | Tsc22d1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.91e-16 | 44 |
neurectodermal cell | 1.91e-16 | 44 |
neural cell | 5.09e-16 | 43 |
neuron | 2.16e-14 | 33 |
neuronal stem cell | 2.16e-14 | 33 |
neuroblast | 2.16e-14 | 33 |
electrically signaling cell | 2.16e-14 | 33 |
electrically responsive cell | 1.99e-11 | 39 |
electrically active cell | 1.99e-11 | 39 |
CNS neuron (sensu Vertebrata) | 1.22e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.25e-21 | 73 |
nervous system | 6.02e-20 | 75 |
ectoderm-derived structure | 5.90e-19 | 95 |
ectoderm | 5.90e-19 | 95 |
presumptive ectoderm | 5.90e-19 | 95 |
neurectoderm | 5.47e-16 | 64 |
neural plate | 5.47e-16 | 64 |
presumptive neural plate | 5.47e-16 | 64 |
ecto-epithelium | 1.10e-13 | 73 |
structure with developmental contribution from neural crest | 1.62e-13 | 92 |
regional part of nervous system | 7.20e-13 | 54 |
neural tube | 9.38e-13 | 52 |
neural rod | 9.38e-13 | 52 |
future spinal cord | 9.38e-13 | 52 |
neural keel | 9.38e-13 | 52 |
pre-chordal neural plate | 2.98e-12 | 49 |
gray matter | 3.87e-11 | 34 |
regional part of forebrain | 1.65e-10 | 39 |
forebrain | 1.65e-10 | 39 |
future forebrain | 1.65e-10 | 39 |
anterior neural tube | 2.07e-10 | 40 |
brain | 2.14e-10 | 47 |
future brain | 2.14e-10 | 47 |
regional part of brain | 4.49e-10 | 46 |
brain grey matter | 3.22e-08 | 29 |
regional part of telencephalon | 3.22e-08 | 29 |
telencephalon | 3.22e-08 | 29 |
embryo | 1.27e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.